Automatically collect morphometric traits of Daphnia and other zooplankton species by leveraging python. Simply take images of individual specimen and point the daphniaruler towards a single image or a directory of images.
You can install the daphnia ruler via github using remotes:
remotes::install_github("nelstevens/daphniaRuler")
If you experience issues during installation see: https://nelstevens.github.io/daphniaRuler/articles/installation_issues.html
For detailed usage see: https://nelstevens.github.io/daphniaRuler/
library(daphniaruler)
measure_image("path/to/image")
The daphniaruler will output a list with all measured traits and plot measurements over the image. For details see: https://nelstevens.github.io/daphniaRuler/articles/measure_single_image.html
library(daphniaruler)
measure_directory("path/to/directory")
The daphniaruler will create a csv file containing all measured images within the directory. Optionally copies of the images with results plotted over can be saved to disk.
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