multintersect: multintersect

In plger/overlapper: overlapper: a shiny app to explore overlaps

Description

Performs pair-wise overlaps between the elements of one or two lists

Usage

multintersect(ll, ll2 = NULL, universe = NULL, addSetSize = TRUE,
  breakNames = NULL)

Arguments

ll	A list of vectors to be compared
ll2	An optional second list of vectors
universe	An optional vector of the universe (all terms), used to calculate overlap probabilities and enrichments. If NULL, the union of all lists will be used. Only elements of 'll' and 'll2' that are in the 'universe' will be considered.
addSetSize	Logical; whether to add the set sizes to set names (default TRUE)
breakNames	If not NULL (default), should be an number indicating the character length threshold above which set names should be split onto two lines.
two.tailed	Logical; whether to test for depletions as well as enrichments (default TRUE)

Value

Returns a list

plger/overlapper documentation built on Feb. 28, 2021, 10:57 p.m.