SangerAlignment-class-launchAppSA: launchAppSA

In roblanf/sangeranalyseR: sangeranalyseR: a suite of functions for the analysis of Sanger sequence data in R

launchAppSA

Description

A SangerAlignment method which launches Shiny app for SangerAlignment instance.

Usage

## S4 method for signature 'SangerAlignment'
launchAppSA(object, outputDir = NULL, colors = "default")

Arguments

object	A SangerAlignment S4 instance.
outputDir	The output directory of the saved new SangerContig S4 instance.
colors	A vector for users to set the colors of (A, T, C, G, else). There are three options for users to choose from. 1. "default": (green, blue, black, red, purple). 2. "cb_friendly": ((0, 0, 0), (199, 199, 199), (0, 114, 178), (213, 94, 0), (204, 121, 167)). 3. Users can set their own colors with a vector with five elements.

Value

A shiny.appobj object.

Examples

data("sangerAlignmentData")
RShinySA <- launchAppSA(sangerAlignmentData)
RShinySA <- launchAppSA(sangerAlignmentData, colors="cb_friendly")

roblanf/sangeranalyseR documentation built on April 15, 2024, 12:44 a.m.