scGOBarPlot: scGOBarPlot visualization

Description Usage Arguments Author(s)

View source: R/scGOBarPlot.R

Description

GO BarPlot visualization for each cluster

Usage

1
2
3
4
5
6
7
8
9
scGOBarPlot(
  object = NULL,
  key = NULL,
  cluster = NULL,
  direction = "up",
  ont = "BP",
  top_n = 20,
  extra = NULL
)

Arguments

object

Seurat object

key

The 'scGO' results that stored in object@misc$key

cluster

Cluster to presentation

direction

Regulation direction to use, only 'up' or 'down'

ont

Ontology to use, only 'BP', 'CC', or 'MF'

top_n

Only top_n entries to plot

extra

Extra slot used to fetch GOs

Author(s)

rstatistics


rstatistics/SCKIT documentation built on Dec. 22, 2021, 7:18 p.m.