countCOs: countCOs

In ruqianl/comapr: Crossover analysis and genetic map construction

countCOs

Description

Count number of COs within each marker interval COs identified in the interval overlapping missing markers are distributed according to marker interval base-pair sizes. Genotypes encoded with "0" are treated as missing value.

Usage

countCOs(geno)

## S4 method for signature 'GRanges'
countCOs(geno)

## S4 method for signature 'RangedSummarizedExperiment'
countCOs(geno)

Arguments

geno	GRanges object or RangedSummarizedExperiment object with genotype matrix that has SNP positions in the rows and cells/samples in the columns

Value

GRanges object or RangedSummarizedExperiment with markers-intervals as rows and samples in columns, values as the number of COs estimated for each marker interval

Author(s)

Ruqian Lyu

Examples

data(twoSamples)
cocount <- countCOs(twoSamples)

ruqianl/comapr documentation built on Oct. 27, 2023, 5:12 a.m.