ehhsR: A function to calculate EHHs (site Extended Haplotype...

In sdwfrost/popseq: Population Analysis of Deep Sequencing Data

Description

A function to calculate EHHs (site Extended Haplotype Homozygosity) given a focal site and a haplotype matrix.

Usage

ehhsR(hapmatrix, site)

Arguments

hapmatrix	A haplotype matrix with ones (ancestral) and twos (derived).
site	A specific site.

Value

EHH (Extended Haplotype Homozygosity).

Author(s)

Fei Xiang ([e-mail])

Examples

exmtx=matrix(sample(2,80,replace=T),ncol=10,nrow=8)
ehhsR(exmtx,2)
ehhsR(exmtx,4)

sdwfrost/popseq documentation built on May 29, 2019, 4:23 p.m.