Files in statOmics/tradeSeq
trajectory-based differential expression analysis for sequencing data
.Rbuildignore
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/feature-requests.md
.github/ISSUE_TEMPLATE/other-issues.md
.github/workflows/RCmdCheck.yaml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/AllGenerics.R
R/associationTest.R
R/cascade.R
R/clusterExpressionPatterns.R
R/conditionTest.R
R/data.R
R/diffEndTest.R
R/earlyDETest.R
R/evaluateK.R
R/fitGAM.R
R/getSmootherPvalues.R
R/getSmootherTestStats.R
R/nknots.R
R/patternTest.R
R/plotGeneCount.R
R/plotSmoothers.R
R/predictCells.R
R/predictSmooth.R
R/startVsEndTest.R
R/utils.R
README.md
_pkgdown.yml
codecov.yml
data/celltype.rda
data/countMatrix.rda
data/crv.rda
data/gamList.rda
data/sds.rda
inst/CITATION
man/associationTest.Rd
man/cascade.Rd
man/celltype.Rd
man/clusterExpressionPatterns.Rd
man/conditionTest.Rd
man/countMatrix.Rd
man/crv.Rd
man/diffEndTest.Rd
man/earlyDETest.Rd
man/evaluateK.Rd
man/fitGAM.Rd
man/gamList.Rd
man/getSmootherPvalues.Rd
man/getSmootherTestStats.Rd
man/nknots.Rd
man/patternTest.Rd
man/plotGeneCount.Rd
man/plotSmoothers.Rd
man/plot_evalutateK_results.Rd
man/predictCells.Rd
man/predictSmooth.Rd
man/sds.Rd
man/startVsEndTest.Rd
tests/testthat.R
tests/testthat/Rplots.pdf
tests/testthat/testConditions.R
tests/testthat/testConsistentOutput.R
tests/testthat/testDETestDetails.R
tests/testthat/testFailures.R
tests/testthat/testFoldChanges.R
tests/testthat/testOneLineage.R
tests/testthat/testPlots.R
tests/testthat/testPredict.R
tests/testthat/testThreeLineages.R
vignettes/Monocle.Rmd
vignettes/cellRankVignette.Rmd
vignettes/cellRankVignette.html
vignettes/cheatsheet_highRes.jpeg
vignettes/evalK_paul.png
vignettes/fitGAM.Rmd
vignettes/multipleConditions.Rmd
vignettes/tradeSeq.Rmd
vignettes/tradeSeq.bib
