DiffusionMap-accessors: DiffusionMap accession methods

In theislab/destiny: Creates diffusion maps

DiffusionMap accession methods

Description

Get and set eigenvalues, eigenvectors, and sigma(s) of a DiffusionMap object.

Usage

## S4 method for signature 'DiffusionMap'
eigenvalues(object)

## S4 replacement method for signature 'DiffusionMap'
eigenvalues(object) <- value

## S4 method for signature 'DiffusionMap'
eigenvectors(object)

## S4 replacement method for signature 'DiffusionMap'
eigenvectors(object) <- value

## S4 method for signature 'DiffusionMap'
sigmas(object)

## S4 replacement method for signature 'DiffusionMap'
sigmas(object) <- value

## S4 method for signature 'DiffusionMap'
dataset(object)

## S4 replacement method for signature 'DiffusionMap'
dataset(object) <- value

## S4 method for signature 'DiffusionMap'
distance(object)

## S4 replacement method for signature 'DiffusionMap'
distance(object) <- value

## S4 method for signature 'DiffusionMap'
optimal_sigma(object)

Arguments

object	A DiffusionMap
value	Vector of eigenvalues or matrix of eigenvectors to get/set

Value

The assigned or retrieved value

See Also

Extraction methods, DiffusionMap methods, Coercion methods for more

Examples

data(guo)
dm <- DiffusionMap(guo)
eigenvalues(dm)
eigenvectors(dm)
sigmas(dm)
dataset(dm)
optimal_sigma(dm)

theislab/destiny documentation built on Jan. 27, 2024, 9:57 p.m.