get_dendrogram: Plot dendrogram tree
In trvinh/test: PhyloProfile
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Plot dendrogram tree
Usage
1
get_dendrogram(dd)
Arguments
dd
dendrogram object
Value
A dendrogram plot
Author(s)
Vinh Tran tran@bio.uni-frankfurt.de
See Also
Examples
1
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5
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8
9
10
data("full_processed_profile_large", package="phyloprofile")
data <- full_processed_profile_large
profile_type <- "binary"
profiles <- get_data_clustering(
data, profile_type, var1_aggregate_by, var2_aggregate_by)
dist_method <- "mutual_information"
distance_matrix <- get_distance_matrix(profiles, dist_method)
cluster_method <- "complete"
dd <- cluster_data_dend(distance_matrix, cluster_method)
get_dendrogram(dd)
trvinh/test documentation built on May 9, 2019, 2:26 a.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
Plot dendrogram tree
Usage
1 | get_dendrogram(dd)
|
Arguments
dd |
dendrogram object |
Value
A dendrogram plot
Author(s)
Vinh Tran tran@bio.uni-frankfurt.de
See Also
Examples
1 2 3 4 5 6 7 8 9 10 | data("full_processed_profile_large", package="phyloprofile")
data <- full_processed_profile_large
profile_type <- "binary"
profiles <- get_data_clustering(
data, profile_type, var1_aggregate_by, var2_aggregate_by)
dist_method <- "mutual_information"
distance_matrix <- get_distance_matrix(profiles, dist_method)
cluster_method <- "complete"
dd <- cluster_data_dend(distance_matrix, cluster_method)
get_dendrogram(dd)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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