annotate_DEoutput: annotate the output file from Differential Expression wrapper
In vivekbhr/vivlib: An R package for useful bioinformatics wrappers

annotate the output file from Differential Expression wrapper

1 2	annotate_DEoutput(DEoutput, Output, remote = TRUE, genome = "hg38", map_file)

`DEoutput`	Tab-seperated output file from `EdgeR_wrapper` or `DESeq_wrapper`
`Output`	Annotated output file name
`remote`	Whether use biomart to annotate file
`genome`	When remote = TRUE, which genome to use (available = "hg38","mm10","dm6")
`map_file`	If remote = FALSE, provide a map file (with ENS id and Gene id in column 1 and 2) respectively

annotated output file

1 2	ed <- system.file("extdata", "edger_output.tsv", package="vivlib") annotate_DEoutput(DEoutput = ed, Output = "edger_output_annotated.tsv", remote = TRUE, genome = "hg38")