boxFluo: boxFluo

In CONFESS: Cell OrderiNg by FluorEScence Signal

Description

It generates the density plots of the uncorrected and corrected cell fluorescence signals.

Usage

boxFluo(data, transformation, reference, legends, batchnames, image.type,
  savePlot)

Arguments

data	List. A list with the fluorescence data. Typically, the output of createFluo().
reference	Integer. The run number to be used as baseline for the run correction.
legends	Character vector. Puts the "uncorrected" or "corrected" legends on the signal density plots.
batchnames	original run name.
image.type	Character string. A triplet of IDs to characterize the type of images under study.
savePlot	Character. A switch to generate the density plots.
transform	Character string. The type of transformation to be performed. One of "bc" (Box-Cox), "log", "log10" or "asinh".

Value

The density plots of the fluorescence data

CONFESS documentation built on Nov. 8, 2020, 6:05 p.m.