boxFluo

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Description

It generates the density plots of the uncorrected and corrected cell fluorescence signals.

Usage

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boxFluo(data, transformation, reference, legends, batchnames, image.type,
  savePlot)

Arguments

data

List. A list with the fluorescence data. Typically, the output of createFluo().

reference

Integer. The run number to be used as baseline for the run correction.

legends

Character vector. Puts the "uncorrected" or "corrected" legends on the signal density plots.

batchnames

original run name.

image.type

Character string. A triplet of IDs to characterize the type of images under study.

savePlot

Character. A switch to generate the density plots.

transform

Character string. The type of transformation to be performed. One of "bc" (Box-Cox), "log", "log10" or "asinh".

Value

The density plots of the fluorescence data

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