All R packages

a4Core
Automated Affymetrix Array Analysis Core Package
a4Reporting
Automated Affymetrix Array Analysis Reporting Package
abd
The Analysis of Biological Data
abind
Combine Multidimensional Arrays
abmi
Data Processing and Analysis for the Alberta Biodiversity Monitoring Institute
abmiOld
Data Processing and Analysis for the Alberta Biodiversity Monitoring Institute
abrem
Abernethy Reliability Methods
abremDebias
Maximum Likelihood Estimation Models for Reliability Analysis
abremout
Output functions for the Abernethy Reliability Methods package (abrem), including plotting.
abremPivotals
Linear Rank Regression Models with Pivotal Monte Carlo Methods for Reliability Analysis
accelerometry
Functions for Processing Minute-to-Minute Accelerometer Data
AcceptABEL
A package for controlling false positives rate in GWAS by estimating local inflation factor
ACEt
Estimating Dynamic Heritability and Twin Model Comparison
acnr
Annotated Copy-Number Regions
adagio
Discrete and Global Optimization Routines
ade4
Analysis of Ecological Data : Exploratory and Euclidean Methods in Environmental Sciences
ade4TkGUI
'ade4' Tcl/Tk Graphical User Interface
adegraphics
An S4 Lattice-Based Package for the Representation of Multivariate Data
adephylo
adephylo: exploratory analyses for the phylogenetic comparative method.
adespatial
Multivariate Multiscale Spatial Analysis
ADGofTest
Anderson-Darling GoF test
admbsecr
SECR models with supplementary location information
advclust
Object Oriented Advanced Clustering
advfclust
Fuzzy Clustering (Ensembling and Optimization)
AEM
Tools to construct Asymmetric eigenvector maps (AEM) spatial variables
afe
Analysis of Factorial Experiments
afex
Analysis of Factorial Experiments
AFLP
Analysis of AFLP data
agrmt
Calculate Agreement or Consensus in Ordered Rating Scales
ALA
Data sets and examples for the book "Applied Longitudinal Analysis"
alabama
Constrained nonlinear optimization
alfa
Apache Log File Analysis
alpha
Robust Cronbach's alpha with missing and non-normal data
alplot
Plot array lists
alr
alternating logistic regression
alr3
Data to accompany Applied Linear Regression 3rd edition
alr4
Data to accompany Applied Linear Regression 4th edition
ambur
Analyzing Moving Boundaries Using R
amburhva
AMBUR-HVA
Animal
Analyze time-coded animal behavior data
ANN
Feedforward Artificial Neural Network optimized by Genetic Algorithm
ant
Version of ant specific to R
apicultuR
A wrapper to the apicultuR set of APIs for NLP in Spanish
AppliedPredictiveModeling
Functions and Data Sets for 'Applied Predictive Modeling'
APR
Applied Psychometrics With R
aqp
Algorithms for Quantitative Pedology
aqr
Interface methods to use with an ActiveQuant Master Server
AquaEnv
Integrated Development Toolbox for Aquatic Chemical Model Generation
archetypes
Archetypal Analysis
arf3DS4
Activated Region Fitting, fMRI data analysis (3D).
arfS4
Activated Region Fitting, fMRI data analysis.
arm
Data Analysis Using Regression and Multilevel/Hierarchical Models
aroma.apd
A probe-level data file format used by aroma.affymetrix [DEPRECATED]
aroma.tcga
Methods for accessing online The Cancer Genome Atlas (TCGA) data
array
Array factor for 2D periodic arrays
arrayhelpers
Convenience Functions for Arrays
arulesNBMiner
Mining NB-Frequent Itemsets and NB-Precise Rules
arulesViz
Visualizing Association Rules and Frequent Itemsets
arulesVizOld
arulesViz - Visualizing Association Rules and Frequent Itemsets
ASAtable
Model-output formatter for sociological research.
aspect
A General Framework for Multivariate Analysis with Optimal Scaling
ASSET
An R package for subset-based association analysis of heterogeneous traits and subtypes
asuR
Advanced statistics using R
AtelieR
A GTK GUI for teaching basic concepts in statistical inference, and doing elementary bayesian tests.
atmosphere
weather and climate analysis
Atools
Atools
audited
Automatic Tracing and Display of Changes to Row Count
aurelhy
Hydrometeorological interpolation
austin
A package for doing things with words
autocorr
Testing Autocorrelation through bootstrap and surrogate methods
background
This packages allow users to ``background'' computations.
BADGER
A package for identifying sample mixups in combined expression and genotyping studies.
bamlss
Bayesian Additive Models for Location Scale and Shape (and Beyond)
BAPC
Projection of cancer incidence and mortality data using Bayesian APC models fitted with INLA
barcode
Barcode distribution plots
barebone
Multivariate Methods in Ecology with R: Basic Algorithms
base64
Base 64 encoder/decoder
basefun
Infrastructure for Computing with Basis Functions
batman
Bayesian AuTomated Metabolite Analyser for NMR spectra
baybi
Bayesian Biclustering with Subject and Variable Importance
bayesdnamix
Procedure for evaluate marginal likelihood for quantitative STR DNA mixture bayesian models
BayesFactor
Computation of Bayes factors for common designs
BayesFactors.gibi
Compute Bayes factors using the GIBI interface
BayesR
Bayesian Regression in R
BayesSingleSub
Computation of Bayes factors for interrupted time-series designs
BayesXdev
R Package Distribution of the BayesX C++ Development Sources
BB
Solving and Optimizing Large-Scale Nonlinear Systems
bbmle
Tools for general maximum likelihood estimation
BcDiag
Diagnostics Plots for Bicluster Data
BCE
Bayesian composition estimator: estimating sample (taxonomic) composition from biomarker data
bclust
Bayesian Hierarchical Clustering Using Spike and Slab Models
bdlp
A Package for Transparent Artificial Data Generation
BDR
Big Data Ready
bdsmatrix
Routines for Block Diagonal Symmetric matrices
bertin
Bertin matrix display
Bessel
Bessel Functions Computations and Approximations
betapart
Partitioning Beta Diversity into Turnover and Nestedness Components
betareg
Beta Regression
bfa
Bayesian Factor Analysis
bfast
Breaks For Additive Season and Trend
bfp
Bayesian Fractional Polynomials
BGLR
Bayesian Generalized Linear Regression
BGLRutils
Utilities for Bayesian Generalized Linear Regression
BH
The Boost C++ Libraries
bibtex
bibtex parser
biclust
BiCluster Algorithms
biclustRank
Ranking of biclusters using another data source
bigalgebra
BLAS routines for native R matrices and big.matrix objects.
biganalytics
A library of utilities for big.matrix objects of package bigmemory.
biglme
Procedure for doing inference of one-way Linear Mixed Effects models.
bigmemory
Manage massive matrices with shared memory and memory-mapped files
bigmemory.sri
A shared resource interface for Bigmemory Project packages
bigmlogit
Estimation of models with limited dependent variables
bigRR
Generalized Ridge Regression (with special advantage for p >> n cases)
BimodalIndex
The Bimodality Index
binom
Binomial Confidence Intervals For Several Parameterizations
binomTools
Performing diagnostics on binomial regression models
BioCalc
Bioclim Variables Calculator
BioCro
Simulation of Biomass Crops
BIOMOD
Ensemble platform for species distribution modeling
biomod2
Ensemble Platform for Species Distribution Modeling
biostatUZH
Misc Tools of the Department of Biostatistics, EBPI, University of Zurich
BiplotGUI
Interactive Biplots in R
bit
A Class for Vectors of 1-Bit Booleans
bit64
A S3 Class for Vectors of 64bit Integers
biVar
Bias-Variance Analysis of the Misclassification Rate
biwavelet
Conduct univariate and bivariate wavelet analyses
BLCOP
Black-Litterman and copula-opinion pooling frameworks
blmr
Broken Line Model Regression
blockDemac
parallel DEMC with several parameter blocks
blockmodeling
An R package for generalized and classical blockmodeling of valued networks
blockra
Block Rearrangement Algorithm
blockrand
Randomization for block random clinical trials
blotter
Tools for Transaction-Oriented Trading Systems Development
BLR
Bayesian Linear Regression
blupsurv
Recurrent events with BLUPs
bmem
Mediation analysis with missing data using bootstrap
BMRV
Bayesian Models for Rare Variant Association Analysis
boilerpipeR
Interface to the boilerpipe Java library by Christian Kohlschutter (http://code.google.com/p/boilerpipe/)
bomDataRipper
BOM data getter
BoostHeaders
The Boost C++ Libraries
bootBCa
Function to find nonparametric BCa intervals
bootfs
Derive Robust Feature Sets for Two or Multiclass Classification Problems
BOS
Model-based clustering of multivariate ordinal data relying on a stochastic binary search algorithm
bounds
Bounds for causal and sufficient-cause interactions
bpkde
Back-Projected Kernel Density Estimation
bpm
Basic functions for panel data analysis
bptwin
Cumulative incidence models for twin data
breakpointError
Breakpoint detection error
brew
Templating Framework for Report Generation
brglm
Bias reduction in binomial-response generalized linear models.
bride
Brier score decomposition of probabilistic forecasts for binary events
btergm
Temporal Exponential Random Graph Models by Bootstrapped Pseudolikelihood
btutils
Utilities for Simple Back Testing of Trading Strategies
BUGSExamples
Collection of BUGS examples
bvpSolve
Solvers for Boundary Value Problems of Differential Equations
bvsflex
Integrative Bayesian variable selection with flexible priors
c060
Extended Inference for Lasso and Elastic-Net Regularized Cox and Generalized Linear Models
c3net
Infering large-scale gene networks with C3NET
C50
C5.0 Decision Trees and Rule-Based Models
ca
Simple, Multiple and Joint Correspondence Analysis
CALIBERcodelists
Generate ICD10, Read and OPCS codelists
CALIBERdatamanage
Data Management Tools for CALIBER Datasets
CALIBERdrugdose
Extract drug dose from unstructured dosage text
CALIBERfma
R interface to the Freetext Matching Algorithm
CALIBERrfimpute
Multiple imputation using MICE and Random Forest
calibFit
Statistical models and tools for assay calibration
CAMAN
Finite Mixture Models and Meta-Analysis Tools - Based on C.A.MAN
CandidateBacon
Provides a measure of the average connectedness among as set of candidate genes and a network-specific distribution of the connectedness of random gene pairs for an arbitrary network of pair wise interactions.
candisc
Visualizing Generalized Canonical Discriminant and Canonical Correlation Analysis
candlesticks
Candlestick Pattern Recognition
CANS.works
Import, manipulate and analyze data from the Massachusetts CANS tool
car
Companion to Applied Regression
cardidates
Identification of Cardinal Dates in Ecological Time Series
caret
Classification and Regression Training
caretLaTeX
LaTeX Classes for the caret Package
caspr
Cellular Automata for Spatial Pressure in R
catlearn
Formal Modeling for Psychology
cbmisc
Claudia's collection of miscellaneous functions
cbmodels
Collection of "combined" models: PCA-LDA, PLS-LDA, etc.
cccp
Cone Constrained Convex Problems
ccgarch2
Conditional Correlation GARCH Models
cdb
Reading and Writing Constant DataBases
cdtRefficient
cdtRefficient
cdtRggplot2
cdtRggplot2
cdtRintroduction
cdtRintroduction
cdtRmodelling
cdtRmodelling
cdtRprogramming
cdtRprogramming
censReg
Censored Regression (Tobit) Models
CENTIPEDE
CENTIPEDE learns a DNaseI footprint of a transcription factor and predicts its binding sites
cffdrs
Canadian Forest Fire Danger Rating System
CFL
Compensatory Fuzzy Logic
cgenpp
Parallel genomic evaluations
cghseg
Segmentation methods for array CGH analysis
cgmisc
Various functions useful in computational genetics, e.g. GWAS.
CHAID
CHi-squared Automated Interaction Detection
charmData
An example dataset for use with the charm package
CHNOSZ
Chemical Thermodynamics and Activity Diagrams
chromatosimul
What the package does (short line)
cinf
Basic tools for chemoinformatics
circular
Circular Statistics
CITAN
CITation ANalysis toolpack
CItools
Computation, comparison and sensitivity analysis of composite indicators of performance
CLAG
An unsupervised non hierarchical clustering algorithm handling biological data
clamix
Clustering modal multi valued symbolic data
ClassComparison
Classes and Methods for "Class Comparison" Problems on Microarrays
ClassDiscovery
Classes and Methods for "Class Discovery" with Microarrays or Proteomics
classInt
Choose Univariate Class Intervals
ClassPrediction
Classes and Methods for "Class Prediction" with Microarrays or Proteomics
classSNitch
Classifies RNA Structure Change in Chemical Mapping Data
ClimMob
Crowdsourcing climate-smart agriculture
climstats
R functions for working with station and gridded climate data.
climtrends
Statistical Methods for Climate Sciences
clustDDist
Clustering Discrete Distributions
Clustericat
This package performs clustering for categorical dataset.
clusterpathRcpp
Fast agglomerative convex clustering, original Rcpp implementation
cmaes
Covariance Matrix Adapting Evolutionary Strategy
cMonkey
cMonkey integrated biclustering algorithm
cmprskWeb
Multistage Competing Risks Analysis for Web data
CMRCT
Fit Capture-Mark-Recapture models in continuous time.
cnagIO
Methods for reading CNAG files
cnf2freq
same Chromosome N-loci F2 frequencies
cnf2freqibdtracer
same Chromosome N-loci F2 frequencies, with IBD tracing
coalesceR
A pedagogical tool to teach the basics of coalescent theory
cobs
COnstrained B-Splines (Sparse Matrix Based)
cobs99
Constrained B-splines -- outdated 1999 version
cocorresp
Co-correspondence analysis methods
codebooks
Management of Survey Data
coefficientalpha
Robust Cronbach's alpha with missing and non-normal data
cofclust
Consensus Optimization Fuzzy Clustering
COGARCH
Simulation and inferenc for COGARCH(1,1) processes
coin
Conditional Inference Procedures in a Permutation Test Framework
colorscience
Color Science Methods and Data
colorspace
Color Space Manipulation
colourschemes
Data-driven colour scheme mappers
commandr
Command pattern in R
CommEcol
Community Ecology Analyses
CommonJavaJars
Useful libraries for building a Java based GUI under R
CoModes
This package performs clustering for categorical dataset by using a conditional modes mixture model
CompRandFld
Composite-Likelihood Based Analysis of Random Fields
conformal
Conformal mapping from a polygon to a disk
conicfit
Algorithms for Fitting Circles, Ellipses and Conics Based on the Work by Prof. Nikolai Chernov
constants
Defines some physical constants and functions commonly used in optics, plasmonics.
contrast
A collection of contrast methods
convoi
Convex Optimization in R
copula
Multivariate Dependence with Copulas
Corbi
Collection of Rudimentary Bioinformatics Tools
cordillera
OPTICS Cordillera
corHMM
Analysis of binary character evolution
corpora
Statistics and Data Sets for Corpus Frequency Data
CorrBin
Nonparametrics with Clustered Binary and Multinomial Data
CoSeg
An R package for cosegregation analysis and simulating pedigrees
coseq
Co-Expression Analysis of Sequencing Data
countreg
Count Data Regression
CoxFlexBoost
Boosting Flexible Cox Models (with Time-Varying Effects)
cRacker
R-script suite for automated processing of proteomic peptide lists
cremo
cremo: Comparative REndering of Model Outputs
CRF
Conditional Random Fields
crop
Graphics Cropping Tool
cropData
Modelling crop trial data
cropr
simulate crop growth
CrossVal
Classes and methods for cross validation of "class prediction" with microarrays or proteomics
CrossValidate
Classes and Methods for Cross Validation of "Class Prediction" with Microarrays or Proteomics
crules
Classification Rules
CSFA
Connectivity Scores with Factor Analysis
cshapes
CShapes Dataset and Utilities
csn
Closed Skew-Normal Distribution
csound
Accessing Csound functionality through R
csSAM
csSAM - cell-specific Significance Analysis of Microarrays
ctglm
ctglm
cthmm
Latent Continuous Time Markov Chains
ctm
Conditional Transformation Models
ctmcmove
Modeling Animal Movement with Continuous-Time Discrete-Space Markov Chains
ctmcMove
Modeling Animal Movement with Continuous-Time Discrete-Space Markov Chains
ctmDevel
Conditional Transformation Models
ctv
CRAN Task Views
Cubist
Rule- and Instance-Based Regression Modeling
CulturalAnalytics
Functions for statistical analysis and plotting of image properties
curve
Dynamic Systems Estimation - Curvature Extensions
cusp
Cusp-Catastrophe Model Fitting Using Maximum Likelihood
CVD
Color Vision Deficiencies
cvGWAS
Genome-wide association analysis based on predictive ability
cvm.test
Discrete Cramer von Mises Goodness-of-Fit Tests
cvrcalc
Cardiovascular Risk Calculator
daewr
Design and Analysis of Experiments with R
dagitty
Graphical Analysis of Structural Causal Models
dairy
Functions and models related to dairy production
DAMisc
Dave Armstrong's Miscellaneous Functions
DanteR
Proteomics data analysis tool
Dataset
Handling survey data in R. (official release)
data.table
Extension of data.frame
date
Functions for handling dates
DCchoice
Analyzing Dichotomous Choice Contingent Valuation Data
dcemri
A Package for Medical Image Analysis
dcemriS4
A Package for Medical Image Analysis (S4 implementation)
dcGOR
Analysis of Ontologies and Protein Domain Annotations
dChipIO
Methods for reading dChip files
dclone
Data Cloning and MCMC Tools for Maximum Likelihood Methods
DCluster
Functions for the Detection of Spatial Clusters of Diseases
DClusterm
Model-based detection of disease clusters
ddepn
Dynamic Deterministic Effects Propagation Networks: Infer signalling networks for timecourse RPPA data.
DDIwR
DDI with R
DeadCanMove
Assess how spatial roadkill patterns change with temporal sampling scheme
debias
Functions implementing MLE,its bias reduction for small samples and related issues
debug
printf-style debugging
decomp
Various functions to quantify and decompose health inequalities
DeconWK
Deconvolution by Weighted Kernels
decUpdate
Update of matrix decompositions
DeducerAlpha
Tools for aggregating scale items
DeducerANOVA
Factorial ANOVA for Deducer
DeducerPlugInScaling
Reliability and factor analysis plugin
DeducerPSY220
PSY220 Deducer Plug-In
DeducerReshape
Converts data frames from wide to long and long to wide formats
DeducerRichOutput
Rich Output Display for Deducer
DeducerSpatial
Deducer for spatial data analysis
DeducerText
Deducer GUI for Text Data
DeepCNV
Exploiting Normal Contamination to Infer Copy Number from Deep Sequencing
deepnlp
Deep Learning Neural Network Models (RNN, CNN, etc) in NLP
DEFFbinary
Compute the design effect for correlated binary data
delftfews
delftfews R extensions
DeMix
Deconvolution Models for Mixed Transcriptomes from Heterogeneous Tumor Samples
DeMixSampleData
'DeMix' Sample Data
demoniche
demoniche - spatial population dynamics
Dendrometry
Decipher Barr & Stroud FP-15 from STX Files
DengueParmEst
Parameter estimates (and real-time prediction) of a single dengue outbreak
DengueRT
Parameter Estimates and Real-Time Prediction of a Single Dengue Outbreak
DEoptimR
Differential Evolution Optimization in Pure R
depmix
Dependent Mixture Models
depmixS4
Dependent Mixture Models - Hidden Markov Models of GLMs and Other Distributions in S4
depthproc
depthproc
DepthProc
Statistical Depth Functions for Multivariate Analysis
desirability
Desirabiliy Function Optimization and Ranking
desire
Desirability functions
deSolve
Solvers for Initial Value Problems of Differential Equations ('ODE', 'DAE', 'DDE')
detect
Analyzing Wildlife Data with Detection Error
deTestSet
Testset for differential equations
DetSel
A computer program to detect markers responding to selection
dfdb
Access Data Tables in a SQLite Data Base as Pseudo-Dataframes
dfdb.RODBC
Access Data Tables in an RODBC Data Base as Pseudo-Dataframes
dfoptim
Derivative-free Optimization
dgof
Discrete Goodness-of-Fit Tests
DiagnosisMed
Diagnostic test accuracy evaluation for health professionals.
diagram
Functions for Visualising Simple Graphs (Networks), Plotting Flow Diagrams
dichromat
Color Schemes for Dichromats
DICOM
Import medical imaging data using the DICOM Standard
DierckxSpline
R companion to "Curve and Surface Fitting with Splines"
diffEq
Functions from the book Solving Differential Equations in R
digest
Create cryptographic hash digests of R objects
digitize
digitize : a plot digitizer in R
directlabels
Direct labels for multicolor plots in lattice or ggplot2
dirichlet
Dirichlet and Generalized Dirichlet Distribution functions
dirt
soil science related functions
diseasemapping
Modelling Spatial Variation in Disease Risk for Areal Data
diseasemappingDevel
Functions to compliment diseasemapping
dismo
Species Distribution Modeling
distr
Object Oriented Implementation of Distributions
distrDoc
Documentation for 'distr' Family of R Packages
distrEllipse
S4 Classes for Elliptically Contoured Distributions
distrEx
Extensions of Package 'distr'
DistributionUtils
Distribution Utilities
distrMod
Object Oriented Implementation of Probability Models
distrRmetrics
Distribution Classes for Distributions from Rmetrics
distrSim
Simulation Classes Based on Package 'distr'
distrTeach
Extensions of Package 'distr' for Teaching Stochastics/Statistics in Secondary School
distrTEst
Estimation and Testing Classes Based on Package 'distr'
disttree
Trees and Forests for Distributional Regression
diveMove
Dive analysis and calibration
dlm
Bayesian and Likelihood Analysis of Dynamic Linear Models
dlrm
Dynamic Linear Regression Model
dmt
Dependency Modeling Toolkit
dnamatch
A procedure for large scale contamination search
dnet
Integrative Analysis of Omics Data in Terms of Network, Evolution and Ontology
documair
Automatic Documentation for R packages
doMC
Foreach Parallel Adaptor for 'parallel'
doParallel
Foreach Parallel Adaptor for the 'parallel' Package
doRNG
Generic Reproducible Parallel Backend for foreach Loops
doSMP
Foreach parallel adaptor for the revoIPC package
doSNOW
Foreach Parallel Adaptor for the 'snow' Package
Dowd
Functions Ported from 'MMR2' Toolbox Offered in Kevin Dowd's Book Measuring Market Risk
downscale
Downscaling Species Occupancy
dpeaqms
Differential Protein Expression Analysis using Quantitative Mass Spectrometry Data (dpeaqms)
dplR
Dendrochronology Program Library in R
dpmixsim
Dirichlet Process Mixture model simulation for clustering and image segmentation
dr
Methods for Dimension Reduction for Regression
drawExpression
Visualising R syntax through graphics
dream
DiffeRential Evolution Adaptive Metropolis
drought
Tools for Drought Modeling and Assessment
dsample
Discretization-Based Direct Random Sample Generation
dse
Dynamic Systems Estimation (Time Series Package)
dse1
DSE (unbundled transition package).
dse2
DSE (unbundled transition package).
dsinr
Functions and datasets for the book "Data Science in R"
DSL
Distributed Storage and List
dtw
Dynamic time warping algorithms
dummy
A dummy package to ask R-Forge to install packages that I need
DWD
DWD implementation based on A IPM SOCP solver
DynTxRegime
Methods for Estimating Dynamic Treatment Regimes
e1071
Misc Functions of the Department of Statistics, Probability Theory Group (Formerly: E1071), TU Wien
earlywarnings
Early Warning Signals Toolbox for Detecting Critical Transitions in Timeseries
earthmovdist
Wrapper to the Emd-L1 library by Haibin Ling and Kazunori Okada
EasyABC
Efficient Approximate Bayesian Computation Sampling Schemes
easydb
Generic S3 Classes for Simple Database Interfaces
easyrodbcaccess
Simple Database Interface for SQLite, MySQL and MS Access
easyrodbcexcel
Simple database interface for RODBC Excel.
easyrodbcmysql
Simple Database Interface for MySQL
eat
eat
eatData
eatData
eatDesign
eatDesign
eatDev
eatDev
eatGet
eatGet
eatModel
eatModel
eatPrep
Prepare Data for IRT Analyses
eatRep
eatRep
eatRest
eatRest
eatTools
eatTools
eatTrend
Estimate National Trends in International Large-Scale Assessments
EBImage
DUMMY DUMMY DUMMY
ebimetagenomics
EBI Metagenomics Portal
EBS
Exact Bayesian Segmentation
Ecdat
Data Sets for Econometrics
Ecfun
Functions for Ecdat
ecolMod
"A Practical Guide to Ecological Modelling - Using R as a Simulation Platform"
ecomodtools
Ecological Modelling Toolbox
ecoPD
Ecologically-informed phylodiversity metrics
ecotoxicology
Methods for Ecotoxicology
ECPaysage
A set of R resources to teach landscape ecology, landscape analysis and spatial statistics
edd
expression density diagnostics
edpcr
Performs Extended Digital PCR Analysis
eefAnalytics
Analytical Package for Analysing Education Trials
eefMLM
Analytical Package for Analysing Education Trials
effects
Effect Displays for Linear, Generalized Linear, and Other Models
efflog
The causal effects for a causal loglinear model
eiwild
Ecological Inference with individual and aggregate data
electricity
Electricity market models
electronics
Electronics
elsa
Entropy-based Local indicator of Spatial Association
emissions
What the package does (short line)
EMLasso
Fit (logistic) LASSO when there is missing data in the predictors
emon
Tools for Environmental and Ecological Survey Design
EngrExpt
Data sets from "Introductory Statistics for Engineering Experimentation"
EnQuireR
A package dedicated to questionnaires
ensbiascoR
Resampling bias correction for large initial condition ensembles
Epi
A Package for Statistical Analysis in Epidemiology
epiG
DNA methylation and SNP calling for bisulfite sequencing data
epinetics
EpiNetics
epineticseq
EpiNeticSeq
EPISbigRR
Generalized Ridge Regression for Analysis of Interaction Effects
EpitopePrediction
Predict Binding Between Peptides and MHC Molecules
EricksenLeslie
numerical solution of Ericsken-Leslie equations for 1D liquid crystal cells
eRm
Extended Rasch Modeling
erpR
Event-related potentials (ERP) analysis, graphics and utility functions
ESM
Ecological Specificity Measures
estimate
Estimate of Stromal and Immune Cells in Malignant Tumor Tissues from Expression Data
etanalysis
Analysis of Eye-tracker data
euroformix
Package for intepretation of quantitative DNA mixtures
euroMix
Calculations for DNA mixtures
euroMixR
Calculations for DNA mixtures, only R code
events
Store and manipulate event data
EventTree
Event Trees for Hazard and Risk Analysis
evir
Extreme Values in R
evtree
Evolutionary Learning of Globally Optimal Trees
ewc
Edge-Weighted Closeness
ExactSampling
ExactSampling: risk evaluation using exact resampling methods for the k Nearest Neighbor algorithm.
exams
Automatic Generation of Exams in R
exec
Execute scripts in exec directory of packages
ExLiebeRes
Exact Liebermann/Reshnikov and Bruhn-Suhr/Krumbholz plans
ExpectedReturns
Computation of implied expected returns
expectile
Modelling of expectiles
extendedForest
Breiman and Cutler's random forests for classification and regression
ExtremalDep
Extremal Dependence Models
EZ2
Modeling Human Response Times and Accuracy using the EZ/EZ2 Diffusion Model
fACD
Autoregressive Conditional Duration Models in R
factorAnalytics
Factor Analytics
FactorAnalytics
Functions for performing factor analysis on financial time series
factorplot
factorplot
fakeplace
Generate fake geographies
fArma
Rmetrics - Modelling ARMA Time Series Processes
fAsianOptions
Rmetrics - EBM and Asian Option Valuation
fAssets
Rmetrics - Analysing and Modelling Financial Assets
fassoc
VARIANCE COMPONENT BASED MULTI-MARKER ASSOCIATION TEST USING FAMILY AND UNRELATED DATA
fastR
Data sets and utilities for Foundations and Applications of Statistics by R Pruim
FaultTree
Fault Trees for Risk and Reliability Analysis
fBasics
Rmetrics - Markets and Basic Statistics
fBonds
Rmetrics - Pricing and Evaluating Bonds
fCertificates
fCertificates - Basics of Certificates and Structured Products Valuation
fCopulae
Rmetrics - Bivariate Dependence Structures with Copulae
FD
Measuring functional diversity (FD) from multiple traits, and other tools for functional ecology
fda
Functional Data Analysis
FDboost
Boosting Functional Regression Models
fdnonpar
Methods for Multivariate or Functional Data
fEcofin
Economic and Financial Data Sets
fExoticOptions
Rmetrics - Pricing and Evaluating Exotic Option
fExpressCertificates
fExpressCertificates - Structured Products Valuation for ExpressCertificates/Autocallables
fExtremes
Rmetrics - Modelling Extreme Events in Finance
FFD
Freedom from Disease
fftrees
Fast- and Frugal Tree Analysis
fGarch
Rmetrics - Modelling Autoregressive Conditional Heteroskedasticity
FGM
Floating Grid Method
fgpt
Floating Grid Permutation Technique
fImport
Rmetrics - Importing Economic and Financial Data
FinancialInstrument
Financial Instrument Model Infrastructure for R
fincov
Methods for estimating covariance matrices
fingerprint
Functions to operate on binary fingerprint data
FinTS
Companion to Tsay (2005) Analysis of Financial Time Series
FIRMAGene
FIRMAGene - differential splicing for Affymetrix Gene 1.0 ST
fisheyeR
Fisheye and Hyperbolic-space-alike Interactive Visualization Tools in R
fishkirkko2015
Dataset of Measurements of Fish Species at Kirkkojarvi Lake, Finland
fitdistrplus
Help to Fit of a Parametric Distribution to Non-Censored or Censored Data
fitmixst4
Fitting mixture of skew t distribution
fit.models
fit.models
fitob
General solvers for the general Black-Scholes (Fokker Planck) partial differential equation (PDE) in a multi-dimensional setting with main application in finance (option pricing).
FKF
Fast Kalman Filter
FLAssess
Generic classes and methods for stock assessment models
FLBEIA
Bio-Economic Impact Assessment of Management strategies using FLR
FLCore
Core package of FLR, fisheries modelling in R.
FLEDA
Exploratory Data Analysis for FLR
FLExamples
Example datasets for FLR manuals and tutorials
FlexBayes
Flexible Bayesian Inference
flexsurv
Flexible parametric survival models
flightcallr
Classify Night Flight Calls Based on Acoustic Measurements
flock
Process Synchronization Using File Locks
FLXSA
eXtended Survivor Analysis for FLR
fMarkovSwitching
R Package for Estimation, Simulation and Forecasting of a Univariate Markov Switching Model
FME
A Flexible Modelling Environment for Inverse Modelling, Sensitivity, Identifiability and Monte Carlo Analysis
fMultivar
Rmetrics - Analysing and Modeling Multivariate Financial Return Distributions
fNonlinear
Rmetrics - Nonlinear and Chaotic Time Series Modelling
foodweb
Generating food webs
fOptions
Rmetrics - Pricing and Evaluating Basic Options
ForAI
Forecasting with Artificial Intelligence
foreach
Provides Foreach Looping Construct for R
ForensicDocument
Quantification and evaluation tools for forensic document examiners
forensim
Statistical tools for the interpretation of forensic DNA mixtures
forestFloor
Visualizes Random Forests with Feature Contributions
forestFloorStable
(Legacy version 1.5)Visualizes Random Forests with Feature Contributions
Formula
Extended Model Formulas
formulr
Miscelaneous tools to handle formulas.
fortunes
R Fortunes
fpop
Segmentation using Optimal Partitioning and Function Pruning
fPortfolio
Rmetrics - Portfolio Selection and Optimization
fPortfolioBacktest
Rmetrics - Portfolio Backtesting
fractal
Fractal Time Series Modeling and Analysis
FRAPO
Financial Risk Modelling and Portfolio Optimisation with R
freesortphi
Cramer's Phi Analysis of Freesort Data
fRegression
Rmetrics - Regression Based Decision and Prediction
freqdom
Frequency Domain Analysis for Multivariate Time Series
frontier
Stochastic Frontier Analysis
FRSstats
FRS Statistics Group R Library
FSelector
Selecting attributes
FSim
A package to search functionally similar genes
fTrading
Rmetrics - Trading and Rebalancing Financial Instruments
ftree
Fault Trees and Event Trees for Risk and Reliability Analysis
fullexampledata
Activated Region Fitting, fMRI data analysis (3D), additional dataset.
fun
Use R for Fun
funcheck
OBSOLETE: Run tests, where possible, on named optimization problem file.
Funclustering
A package for functional data clustering.
funcreg
Functional Regression Estimation
functional
Curry, Compose, and other higher-order functions
fUnitRoots
Rmetrics - Modelling Trends and Unit Roots
funphylocom
Functional traits, phylogenies, communities, simulations
fuse
Framework for Understanding Structural Errors (FUSE)
FuseBox
Combining Classifiers
fusedanova
Fused-ANOVA
fusedanova2
Fused-ANOVA
FUtils
Felix's favorite functions
FuzzyNumbers
Tools to deal with fuzzy numbers in R
fuzzySim
Fuzzy similarity in species distributions
fwi.fbp
Fire Weather Index System and Fire Behaviour Prediction System Calculations
fxregime
Exchange Rate Regime Analysis
G2Sd
Grain-size Statistics and Description of Sediment
g4n
graph for networks
gada
Genome Alteration Detection Algorithm (GADA)
gamboostLSS
Boosting Methods for GAMLSS
gamesNws
Playing games using a NWS Server
gamlss.cens
Fitting an interval response variable using gamlss.family distributions
gamlss.data
GAMLSS Data.
gamlss.demo
Demos for GAMLSS
gamlss.dist
Distributions to be used for GAMLSS modelling.
gamlss.mx
A GAMLSS add on package for fitting mixture distributions
gamlss.nl
Fitting non linear parametric GAMLSS models
gamlss.tr
Generating and fitting truncated (gamlss.family) distributions
gammadnamix
Package for intepretation of quantitative DNA mixtures
GARPFRM
Global Association of Risk Professionals: Financial Risk Manager
gazepath
Parse Eye-Tracking Data into Fixations
gcensus
Census populations and polygons
gcmdiag
Growth curve modeling diagnostics
gdalUtils
Wrappers for the Geospatial Data Abstraction Library (GDAL) Utilities
gdata
Various R Programming Tools for Data Manipulation
gdistance
Distances and Routes on Geographical Grids
gdm
Create Generalised Dissimilarity Models
Gdm01
Create Generalised Dissimilarity Models
GDS
Genome-Wide Differential Splicing Detection
gdsfmt
R Interface to CoreArray Genomic Data Structure (GDS) files
geeni
gee in bounded memory, data from disk etc.
GenABEL.data
Data Used by the GenABEL Examples and Test Functions
GenAlgo
Classes and Methods to Use Genetic Algorithms for Feature Selection
geneNetBP
Belief Propagation in Genotype-Phenotype Networks
GeneralizedHyperbolic
The Generalized Hyperbolic Distribution
GeneralizedLambda
The Generalized Lambda Distribution
genoPlotR
Plot Publication-Grade Gene and Genome Maps
genutils
IRRI Geography Lab - General Utilities
geo
Draw and Annotate Maps, Especially Charts of the North Atlantic
GeoConst
Datasets and helper functions for commonly required values in geochemistry.
geoCount
Analysis and Modeling for Geostatistical Count Data
geoextras
Extras for the 'geo' package
geometry
Mesh Generation and Surface Tesselation
geonames
Interface to www.geonames.org web service
geoRExtended
An extension of the geoR package.
GeoRiskR
Data and functions for Geotechnical Risk Assessment
georob
Robust Geostatistical Analysis of Spatial Data
geospt
Geostatistical Analysis and Design of Optimal Spatial Sampling Networks
geostatsp
Geostatistical Modelling with Likelihood and Bayes
geovec
Manipulation of geographic vector (points, lines, polygons) data
getMODIS
Utility package for creating or updating a local user-defined subsets of the global MODIS grid data online archive. Pre-processing functionalities for MODIS grid data using MODIS Reporjection Tool (MRT)
getopt
C-like getopt behavior.
ggene
Semivariogram and Exploratory Spatial Analysis of Genetic Data
ggplotFL
Using ggplot2 in FLR
ghyp
A package on the generalized hyperbolic distribution and its special cases
Gibi
What the package does (short line)
Gifi
Gifi Methods for Categorical Multivariate Analysis
glba
General Linear Ballistic Accumulator Models
gldist
An Asymmetry-Steepness Parameterization of the Generalized Lambda Distribution.
glmBfp
Bayesian Fractional Polynomials for GLMs
glmertree
Generalized Linear Mixed Model Trees
glmmADMB
Generalized Linear Mixed Models using 'AD Model Builder'
glmmBUGS
Generalised Linear Mixed Models with BUGS and JAGS
glmmixedlasso
Generalized Linear Mixed Models with Lasso
glmx
Generalized Linear Models Extended
globalboosttest
Testing the additional predictive value of high-dimensional data
glogis
Fitting and Testing Generalized Logistic Distributions
GLoMo
Naive General Location Model
glucpack
glucpack
gMCP
Graph Based Multiple Comparison Procedures
gmkin
Graphical User Interface for Fitting Kinetic Models to Chemical Degradation Data
gmm
Generalized Method of Moments and Generalized Empirical Likelihood
gmpm
Generalized Multilevel Permutation Models
gnmf
Generalized Non-Negative Matrix Factorization Based on Renyi Divergence
gof
Model-diagnostics based on cumulative residuals
gogarch
Generalized Orthogonal GARCH (GO-GARCH) models
gpairs
gpairs: The Generalized Pairs Plot
GPArotation
GPA Factor Rotation
gplots
Various R Programming Tools for Plotting Data
Gqr
Determine knots and weights for Gaussian quadrature rules
gr2
Graphical R$^2$
gradientForest
Random Forest functions for the Census of Marine Life synthesis project.
grainscape
Grains of connectivity and minimum planar graph modelling of landscape connectivity (Windows only)
graphicsQC
Quality Control for Graphics in R
gRaviopt
What the package does (short line)
gravy
Gradient Analysis of Vegetation
gRbase
A package for graphical modelling in R
gRc
Inference in Graphical Gaussian Models with Edge and Vertex Symmetries
gRchain
Fitting Chain Graph Models
greenbrown
Land Surface Phenology and Trend Analysis
gregmisc
Greg's Miscellaneous Functions
Grho
Grho parameters for asymptotic regression
gridDebug
Debugging 'grid' Graphics
gridExtra
functions in Grid graphics
gridgame
A game framework for R
gridGraphviz
Drawing Graphs with 'grid'
gridSVG
Export 'grid' Graphics as SVG
grImport
Importing Vector Graphics
grndata
Synthetic Expression Data for Gene Regulatory Network Inference
GRTS
Spatially balanced sampling based on GRTS
gsDesign
Group Sequential Design
GSEArot
GSEA rotation
GSIF
Global Soil Information Facilities
gslcca
Generalized Semi-Linear Canonical Correlation Analysis
gsmoothr
Smoothing tools
gsod
obtain daily weather data
gstat
Spatial and Spatio-Temporal Geostatistical Modelling, Prediction and Simulation
gsymbols
Grid-based symbols
Guerry
Maps, data and methods related to Guerry (1833) "Moral Statistics of France"
GUTS
Fast Calculation of the Likelihood of a Stochastic Survival Model
GVAR
Vector Error Correction Model (VECM), VECM with exogenous I(1) variables, Global VAR (GVAR)
GWAtoolbox
GWAS Quality Control
gWidgets
gWidgets API for building toolkit-independent, interactive GUIs
gWidgetsManipulate
port of RStudio's manipulate package using gWidgets
gWidgetsrJava
Toolkit implementation of gWidgets for rJava
gWidgetstcltk
Toolkit implementation of gWidgets for tcltk package
gWidgetsWWW
Toolkit implementation of the gWidgets API for use with web pages
gWidgetsWWW2
Toolkit implementation of the gWidgets API for use with web pages
HaarSeg
HaarSeg
HadoopStreaming
Utilities for using R scripts in Hadoop streaming
hafroAssmt
Hafro Assessment Toolbox
HaploSurvival
Modelling of haplo-effects for survival data, including competing risks. Effect of haplomatch for BMT studies.
hawkes
Hawkes process simulation and calibration toolkit
Hawkes
Hawkes
hbiclust
Hierarchical Biclustering
HCgglasso
Group-Lasso with Hierarchical Clustering
hdi
High-Dimensional Inference
hdlm
Fitting High Dimensional Linear Models
hdm
High-Dimensional Metrics
HDPenReg
High-Dimensional Penalized Regression
HDR
Processing of hyperspectral reflectance data
helloJavaWorld
Hello Java World
hepi
Functions for estimating hedonic elementary price indices
heplots
Visualizing Hypothesis Tests in Multivariate Linear Models
herblabel
Making Labels for Herbarium Specimens in RTF and More
hgam
High-dimensional Additive Modelling
hglm
Hierarchical Generalized Linear Models
hglm.data
Data for The hglm Package
HIBAG
HIBAG -- HLA Genotype Imputation with Attribute Bagging
highfrequency
Tools for Highfrequency Data Analysis
highlight
Syntax highlighter
highriskzone
Determining and Evaluating High-Risk Zones
hisemi
Hierarchical Semiparametric Regression of Test Statistics
HistData
Data Sets from the History of Statistics and Data Visualization
HistogramTools
Utility Functions for R Histograms
HITXML
Planning tools for ion beam therapy
hive
Hadoop InteractiVE
h.likelihood
Statistical Modeling and Inference via Hierarchical Likelihood
hmmr
Data and examples package accompanying the book 'HMMs with R'
HMSC
Hierarchical modelling of species community
Holidays
Holiday and Half-Day Data, for Use with the 'TimeWarp' Package
hpcwld
High Performance Cluster Models Based on Kiefer-Wolfowitz Recursion
HTDA
HTDA (High Throughput Data Analysis)
htmltools
R Tools for Producing HTML (Base64 Coding and R Interface to the tth/ttm TeX to HTML Translator)
HTSCluster
Clustering High-Throughput Transcriptome Sequencing (HTS) Data
HTSDiff
Differential Analysis of RNA-Seq Data with Poisson Mixture Models
hubbell
Functions for Hubbell's Grand Unified Theory
hwriter5
hwriter5: Writing HTML5 from R
HybridMC
Implementation of the Hybrid Monte Carlo and Multipoint Hybrid Monte Carlo sampling techniques
hydroEFS
Hydrological Event Finding and Summarising (hydroEFS).
hydroMet
Meteorological Data for Hydrological Modeling
HyperbolicDist
The hyperbolic distribution
hypergsplines
Bayesian model selection with penalised splines and hyper-g prior
hyperSpec
Work with Hyperspectral Data, i.e. Spectra + Meta Information (Spatial, Time, Concentration, ...)
hyperSpecGUI
Graphical interface for hyperSpec package, includes interactive plots
IBData
IB Real-time Data package
IBDhaploRtools
Functions for the Analysis of IBD Haplo Output.
IBDlabels
Convert between different IBD-state labelling schemes
IBDLabels
Convert Between Different IBD-State Labelling Schemes.
ibmpm
Individual-based metapopulation model
ica4fts
ica4fts package
icav
IC-ac
ICC
Functions facilitating the estimation of the Intraclass Correlation Coefficient
icpsrmsda
Optimal Linearizing Transformations for Multivariate Data
idbg
R debugger
ifctools
Italian fiscal code miscellaneous utilities
ifrogs
Finance routines developed by the IGIDR Finance Research Group.
ifs
Iterated Function Systems
ifultools
Insightful Research Tools
IGIR
Integrative network Graphic Engine Interface for R
IHA
This package implements The Nature Conservancy's Indicators of Hydrologic Alteration software in R.
imad
Iteratively Re-weighted Multivariate Alteration Detection (iMAD)
imagemap
Create html imagemaps
imguR
Share plots using the imgur.com image hosting service
immunoassay
Functions for working with immunoassay data.
INBOtheme
Themes for ggplot2
infeR
A pedagogical tool to teach the basics of inference in population genetics
inference
Functions to extract inferential values of a fitted model object
INLABMA
Bayesian Model Averaging with INLA
inlaDevel
Development files for INLA
inlinedocs
Convert inline comments to documentation
inspectr
Storing, manipulating and analysis spectroscopy and associated data in R.
int64
64 bit integer types
IntClust
Integrated Data Analysis via Clustering
integIRTy
Integrating Multiple Modalities of High Throughput Assays Using Item Response Theory
IntegratedJM
Joint Modelling of the Gene-Expression and Bioassay Data, Taking Care of the Effect Due to a Fingerprint Feature
intergraph
Coercion routines for network data objects in R
intervals
Tools for working with points and intervals
intReg
Interval Regression
IntroCompFinR
Introduction to Computational Finance in R
inum
Interval and Enum-type Representation of Vectors
ipeds
Integrated Postsecondary Education Data System (IPEDS) Access
ipeglim
Imprecise Inferential Framework on Statistical Reasoning
IPMpack
Builds and analyses Integral Projection Models (IPMs).
ipred
Improved Predictors
IPSUR
Introduction to Probability and Statistics Using R
irt
irt. Spady's Item Response Model
IsoGene
Order-Restricted Inference for Microarray Experiments
IsoGeneGUI
A graphical user interface to conduct a dose-response analysis of microarray data
IsolationForest
Isolation Forest
isotone
Active Set and Generalized PAVA for Isotone Optimization
issb
R code associated with the book chapter "Simulation of stochastic kinetic models"
isuR
Introducing statistics using R
iterators
Provides Iterator Construct for R
itertools
Iterator Tools
ithir
Functions and Algorithms Specific to Pedometrics
jacobi
Jacobi Rotations
JBTools
Misc Small Tools and Helper Functions for Other Code of J. Buttlar
JDEoptim
j-Differential Evolution Optimization
jjplot
The jjplot plotting library for making beautiful plots fast and simple.
jobqueue
Generic Asynchronous Job Queue
jointseg
Joint segmentation of multivariate (copy number) signals
jss
Journal of Statistical Software Utilities
khb
KHB: Comparing nonlinear regression models
kimisc
Kirill's miscellaneous functions
kinfit
Routines for Fitting Kinetic Models to Chemical Degradation Data
klaR
Classification and visualization
klausuR
Multiple Choice Test Evaluation
kmeansstep
stepwise k-means cluster model selection
Kmer
Computes a matrix of K-mer counts.
kmndirs
k-Mean-Directions Algorithm
knapsack
Knapsack Routines
KnockKnockJokes
Knock-Knock Jokes
ks.test
Proposed Revision to stats::ks.test()
labeling
Axis Labeling
labeltodendro
Convert labels or tables to a dendrogram
labstatR
Libreria Del Laboratorio Di Statistica Con R
Lahman
Sean Lahman's Baseball Database
lassogrp
Lasso Regression including group lasso and adaptive lasso
lattice
Trellis Graphics for R
latticeExtra
Extra Graphical Utilities Based on Lattice
lava
Latent Variable Models
lava.mixture
Mixtures of Linear Latent Variable Models
lava.tobit
LVM with censored and binary outcomes
LazyMLVA
LazyMLVA
lbiassurv
Length-biased correction to survival curve estimation.
lcmix
Layered and chained mixture models
LDExplorer
Efficient Whole-Genome LD Based Haplotpe Block Recognition
LDOD
Finding Locally D-optimal optimal designs for some nonlinear and generalized linear models.
LeerFotos
Extrae la informacion de los metadatos de imagenes .jpg
lethal
Compute lethal doses (LD) with confidence intervals
lfstat
Calculation of Low Flow Statistics for Daily Stream Flow Data
libamtrack
Computational Routines for Proton and Ion Radiotherapy
libcoin
Linear Test Statistics for Permutation Inference
LIM
Linear Inverse Model examples and solution methods
limSolve
Solving Linear Inverse Models
linLIR
linear Likelihood-based Imprecise Regression
linprog
Linear Programming / Optimization
lisp
List-processing à la SRFI-1
lm.br
Linear Model with Breakpoint
lmeSplines
Add smoothing spline modelling capability to nlme.
lmodel2
Model II Regression
lmsqreg
LMS (Cole-Green Stat in Med 1992 quantile regression)
lmSubsets
Exact linear subset regression
lnar
Inference for stochastic kinetic genetic networks.
LncDM
The Different Methylation Sites, Elements and Regions of lncRNA
loa
Lattice Options and Add-Ins
localEM
Nonparametric Modelling of Spatial Risk for Areal Disease Data
locClass
Collection of Local Classification Methods
locClassData
Collection of Artificial Classification Problems
Lock5Data
Datasets for "Statistics: UnLocking the Power of Data"
log10
Decimal log plotting in two and three dimensions
logging
R logging package
logistic4p
Logistic Regression with Misclassification in Dependent Variables
logisticDx
Diagnostic tests for logistic regression models
LogisticDx
Diagnostic Tests for Models with a Binomial Response
logitnorm
Functions for the Logitnormal Distribution
loglognorm
Double log normal distribution functions
logopt
Log optimal (universal) portfolios
lokern
Kernel Regression Smoothing with Local or Global Plug-in Bandwidth
loret
Logistic Regression Trees for Multinomial and Ordinal Responses
lpridge
Local Polynomial (Ridge) Regression
lpSolveAPI
R Interface to 'lp_solve' Version 5.5.2.0
lqmm
Linear Quantile Mixed Models
lshorth
The Length of the Shorth
lsmeans
Calculates the lsmeans and their variances for lm, gls,lme,mer,lmer and glmer models
LSPM
The Leverage Space Portfolio Modeler
luck
Generalized iLUCK models
mada
Meta-Analysis of Diagnostic Accuracy
MADAM
This package provides some basic methods for meta-analysis
MAMI
Model Averaging and Model Selection after Multiple Imputation
mapmisc
Utilities for Producing Maps
mapoland
Maps of Poland for data visualization and graphics
maptools
Tools for Reading and Handling Spatial Objects
march
Markov Chains
marelac
Tools for Aquatic Sciences
marelacTeaching
Datasets and tutorials for use in aquatic sciences
mas1343
MAS1343: Introduction to statistical computing
mas2316
MAS2316: Introduction to regression and modelling
mas3321
Bayes normal linear model and basic MCMC
MassAtChance
Implementation of the Mass at Chance models for subliminal priming accuracy data
mastermix
Procedure for deconvolving, weight-evidence and database search using STR DNA mixtures
MatchImage
likelihood-based image id code
matchingMarkets
Analysis of Stable Matchings
maticce
Mapping Transitions in Continuous Character Evolution
Matrix
Sparse and Dense Matrix Classes and Methods
MatrixModels
Modelling With Sparse and Dense Matrices
matrixStats
Methods that apply to rows and columns of a matrix
maxLik
Maximum Likelihood Estimation and Related Tools
mc2d
Tools for Two-Dimensional Monte-Carlo Simulations
MCIBD
Monte Carlo Identity-By-Descent Matrix Estimation
mclogit
Mixed Conditional Logit Models
mco
Multi criteria optimization algorithms and related functions
mcplR
Multiple Cue Probability Learning in R
mcp.project
Applies different False Discovery Rate controlling procedures
mcsSubset
MCS: Variable Subset Selection in Linear Regression
MDP
Markov Decision Processes (MDPs) in R
MDSGUI
A GUI for interactive MDS in R
MeDiChI
MeDiChI ChIP-chip deconvolution library
MEET
MEET: Motif Elements Estimation Toolkit
mefa
Multivariate Data Handling in Ecology and Biogeography
mefa4
Multivariate Data Handling with S4 Classes and Sparse Matrices
MELON
Methylation Enriched LOci Normalization (MELON) for genome-wide DNA methylation experiments
memgene
Spatial pattern detection in genetic distance data
memisc
Tools for Management of Survey Data and the Presentation of Analysis Results
MEMSS
Data sets from Mixed-effects Models in S
messageQueue
Allow R to communicate with message queues
meta4diag
Meta-Analysis for Diagnostic Test Studies
MetABEL
Meta-analysis of genome-wide SNP association results
metapop
Metapopulations and Incidence Functions
metaRNASeq
Meta-analysis of RNA-seq data
metatest
Fit and test metaregression models
meteo
Spatio-Temporal Analysis and Mapping of Meteorological Observations
MethComp
Analysis of Method Comparison studies
metlab
The Metrics Laboratory
metRology
Support for Metrological Applications
metrumrg
Pharmacometric Tools for Data Preparation, Modeling, Simulation, and Reporting
mets
Analysis of Multivariate Event Times
MFTSR
Modelling Financial Time Series with R
mGSZ
Gene set analysis based on GSZ-scoring function and asymptotic p-value
MHTrajectoryR
Bayesian Model Selection in Logistic Regression for the Detection of Adverse Drug Reactions
mhurdle
Multiple Hurdle Tobit Models
mi
Missing Data Imputation and Model Checking
micEcon
Microeconomic Analysis and Modelling
micEconAids
Demand Analysis with the Almost Ideal Demand System (AIDS)
micEconCES
Analysis with the Constant Elasticity of Substitution (CES) function
micEconDist
Microeconomic Production Analysis with Distance Functions
micEconNP
Microeconomic Analysis with Non-Parametric Methods
micEconSNQP
Symmetric Normalized Quadratic Profit Function
mif2
MIF2 algorithm development package
migui
Graphical User Interface of the mi Package
minqa
Derivative-free optimization algorithms by quadratic approximation
miRtest
Combined miRNA- and mRNA-Testing
miscTools
Miscellaneous Tools and Utilities
missMDA
Handling missing values with/in multivariate data analysis (principal component methods)
mitools
Tools for multiple imputation of missing data
MixAll
Clustering using Mixture Models
MixCluster
MixCluster performs the clustering of mixed-type data sets (data sets with different natures of variables) with missing values.
MixedTS
Mixed Tempered Stable Distribution
mixexp
Design and Analysis of Mixture Experiments
MixGHD
Model Based Clustering, Classification and Discriminant Analysis Using the Mixture of Generalized Hyperbolic Distributions
mixlm
Mixed model ANOVA for lm and lmer
mixPHM
Mixtures of proportional hazard models.
mixstock
functions for mixed stock analysis
MixtureDistribution
Mixture Distribution
mixvarselect
Mixture of expert modelling with variable selection using penalization
mkin
Kinetic Evaluation of Chemical Degradation Data
mlearning
Machine learning algorithms with unified interface and confusion matrices
mlfm
Semiparametric multilevel frailty models, estimated via EMPL method
MLGL
Multi-Layer Goup-Lasso
mlmRev
Examples from Multilevel Modelling Software Review
mlogit
multinomial logit model
mlt
Most Likely Transformations
mmap
Map Pages of Memory
MmgraphR
Graphing for Markov Models and Hidden Markov Models
mmSAR
mmSAR is an R package for the modelling of the Species-Area Relationship (SAR).
mnbem
Matrix Normal Block EM
ModelDataComp
Model-Data Comparison
Modeler
Classes and Methods for Training and Using Binary Prediction Models
modelfree
Model-free estimation of a psychometric function
ModelGood
Validation of risk prediction models
modelObj
A Model Object Framework for Regression Analysis
modEvA
Model Evaluation and Analysis
modi
Multivariate outlier detection and imputation for incomplete survey data
MODIS
MODIS Acquisition and Processing
modiscloud
R tools for processing Level 2 Cloud Mask products from MODIS
modisws
Interface to the web processing service for MODIS data
mombf
Moment and Inverse Moment Bayes Factors
MonetDB.R
Connect MonetDB to R
mosaicManip
Project MOSAIC (mosaic-web.org) manipulate examples.
MotilityLab
Quantitative Analysis of Motion
motmot
Models of Trait Macroevolution on Trees
move
Visualizing and Analyzing Animal Track Data
MPAgenomics
Multi-Patient Analysis of Genomic Markers
MPAlars
lars algorithm
mpc
MPC - Multiple Precision Complex Library
mpcbs
Multi-sample and Multiplatform CNV.
MPDiR
Data sets and scripts for Modeling Psychophysical Data in R.
mpia
Meaningful Purposive Interaction Analysis
mpifarm
Farm out a sequence of jobs to a cluster of slaves using MPI.
MplusAutomation
Automating Mplus Model Estimation and Interpretation
mpm
Multivariate Projection Methods
mpmi
Mixed-pair mutual information estimators
mpmm
Marginal Product Mixture Model for Relational Event Data
MPsychoR
Modern Psychometrics With R
MPTinR
Analyze Multinomial Processing Tree Models
MPTinR2
Analyze Multinomial Processing Tree Models
mqext
M-quantile extension of the mixed linear model
mqqc
Quality control of LCMS derived proteomic data
mrpdata
Data for Multilevel Regression and Poststratification
MRPP
Multiresponse permutation procedure and its variable importance and variable selection methods.
MrPzurich2013
MrP functions for MA class Zurich 2013
msap
Statistical analysis for Methylation-sensitive Amplification Polymorphism data
MSDI
Multivariate Standardized Drought Index (MSDI)
msim
This package implements the method of simulated moments for the GLMM logit mixed model as described in Jiang's (1998) article, Consistent Estimators in Generalized Linear Mixed Models.
msimul
Utilities for Simulation in Monte Carlo Experiments
mskf
Markov Switching Kalman Filter
msm
Multi-State Markov and Hidden Markov Models in Continuous Time
MSToolkit
The MSToolkit library for clinical trial design
mtcreator
Creating MAGE-TAB files using mtcreator
multcomp
Simultaneous Inference in General Parametric Models
MultiABEL
Multi-Trait Genome-Wide Association Analyses
multiCA
Multinomial Cochran-Armitage Trend Test
multiplier
Multiplier Analysis for SAM and FSAM
multxpert
Common Multiple Testing Procedures and Gatekeeping Procedures
MuMIn
Multi-Model Inference
munfold
Metric Unfolding
munsellinterpol
Interpolate Munsell Renotation Data from Hue/Chroma to CIE/sRGB
mutils
Basic Utilities for Data Management, Graphics, and Simulation
mutoss
Unified multiple testing procedures
mvabund
Statistical Methods for Analysing Multivariate Abundance Data
MvBinary
Modelling Multivariate Binary Data with Blocks of Specific One-Factor Distribution
mvinfluence
Influence Measures and Diagnostic Plots for Multivariate Linear Models
mvProbit
Multivariate Probit Models
mvtnorm
Multivariate Normal and t Distributions
myFuncs
Colins Usefull functions
myplotrix
Various plotting functions
mzmatch.Data
Orbitrap Mass Spectrometry raw data example files
mzmatch.R
mzmatch and PeakML integration for XCMS.
nacopula
Nested Archimedean Copulas
nacopulaNew
Nested Archimedean Copulas
nadiv
Functions to construct non-additive genetic relatedness matrices
NameNeedle
NameNeedle package
namespace
Provide namespace managment functions not (yet) present in base R
nbpMatching
Functions for Optimal Non-Bipartite Matching
nccMLE
MLE for nested case cohort and case-cohort designs
ncdf.tools
Easier 'NetCDF' File Handling
nclbayes
Functions, Demos and Examples of Bayesian Analysis and Basic MCMC
nclRadvanced
nclRadvanced
nclRcourses
Functions for R courses at Newcastle University
nclRefficient
nclRefficient
nclRggplot2
nclRggplot2
nclRintroduction
A nclRintroduction
nclRintroductionB
nclRintroductionB
nclRmodelling
nclRmodelling
nclRpackage
A package for the Newcastle University R courses.
nclRprogramming
nclRprogramming
nclRprogrammingB
nclRprogrammingB
ndvits
NDVI Time series extraction and analysis
nea
Network Enrichment Analysis
neaGUI
A user friendly R package to perform the network enrichment analysis (NEA).
needleman.wunsch
Needleman Wunsch computation
neotoma
A Package to access the Neotoma Paleoecological Database using an API.
nephro
Biostatistics utilities for nephrology
netbenchmark
Benchmarking of several gene network inference methods
NetIndices
Estimating network indices, including trophic structure of foodwebs in R
netmes
Exploratory Analysis of Gene Networks with Netmes, An R package for network-based measures
NetSim
A Social Networks Simulation Tool in R
network
Classes for Relational Data
newboost
New boosting algorithms
nhanesaccel
Process Accelerometer Data from NHANES 2003-2006
nhanesdata
Contains data from continuous NHANES (years 1999-2012).
nicholsonppp
Evolution simulation and classification
NiLeDAM
Monazite Datation for the NiLeDAM team
NISTO
Nonlinear least squares and function minimization examples from NIST
NISTopt
Nonlinear least squares examples from NIST in form of functions for optim() and optimx()
NISTunits
Fundamental Physical Constants and Unit Conversions from NIST
nlcv
Nested Loop Cross Validation
nlme2test
Testing pdKroneckeR class in nlme package.
nlmeU
Datasets and utility functions enhancing functionality of nlme package.
nlmeUpdK
New pdMat class: pdKronecker (prototype version described in Galecki, Burzykowski (2013) book)
nlmrt
Functions for Nonlinear Least Squares Solutions
nloptwrap
Wraps solvers in Package nloptr
nlraa
Non-linear regression for agricultural applications
nlsr
Functions for nonlinear least squares solutions to replace nls()
nlstools
Tools for nonlinear regression diagnostics
NlsyLinks
Utilities and kinship information for research with the NLSY
NMOF
Numerical Methods and Optimization in Finance
nnetpredint
Prediction Intervals of Multi-Layer Neural Networks
NonDecompGraph
NonDecomposable Graph
nonlinearAnalysis
R package for nonlinear time series analysis
nopp
Nash Optimal Party Positions
nor1mix
Normal (1-d) Mixture Models (S3 Classes and Methods)
nordklimdata1
Dataset for Climate Analysis with Data from the Nordic Region
norm
Analysis of multivariate normal datasets with missing values
NormalLaplace
The Normal Laplace Distribution
npde
Normalised prediction distribution errors for nonlinear mixed-effect models
npFrontier
Non-Parametric and Semi-Parametric Stochastic Frontier Analysis
NRAIA
Data sets from "Nonlinear Regression Analysis and Its Applications"
NSA
Post-normalization of total copy numbers
nspack
Utility functions only useful on computers accessible to Nick Sabbe
nucim
Nucleus imaging
numbers
Number-Theoretic Functions
numDeriv
Accurate Numerical Derivatives
NumDfr
Provide a performant alternative to data.frame wrt factors
numericalecon
Numerical Methods for Economists
nwfscAgeingError
Ageing error
nwfscDeltaGLM
Bayesian delta-GLM package for constructing indices of CPUE data
nwfscMapping
Mapping functions for NWFSC
nwfscNLTS
Non-linear time series
nwfscSurveyCode
What the package does (short line)
obsSens
Sensitivity analysis for Observational studies.
OceanView
Visualisation of Oceanographic Data and Model Output
odeintr
C++ ODE Solvers Compiled on-Demand
odfWeave
Sweave processing of Open Document Format (ODF) files
OMBRE
What the package does (short line)
omnr.gillnet
Gillnet size selectivity analysis
Oncotree
Estimating oncogenetic trees
oompaBase
Class Unions, Matrix Operations, and Color Schemes for OOMPA
oompaData
Data to Illustrate OOMPA Algorithms
opefimor
Option Pricing and Estimation of Financial Models in R
OpenRepGrid
Tools to analyse repertory grid data
opentick
R API to opentick databases
operators
Additional operators and utilities for R
opm
Analysing Phenotype Microarray and Growth Curve Data
opmdata
OmniLog(R) Phenotype Microarray Example Data
opmextra
Additional Functions for Analysing OmniLog(R) Phenotype Microarray Data
optfntools
Tools for assisting the preparation and testing of objective functions for optimization.
optimgui
EXPERIMENTAL: A GUI program to assist optimization problems in R
optimr
A Replacement and Extension of the 'optim' Function
optimrx
Expanded Replacement and Extension of the 'optim' Function
optimx
A Replacement and Extension of the 'optim' Function
optimz
A Replacement and Extension of the 'optim' Function
optparse
Command line option parser.
optplus
A wrapper for optimization methods (function minimization with at most bounds and masks).
optreplace
Trial package to replace optim() function with better codes
OralHygiene
Loads the Gingival epithelial cell line ExpressionSet object
ORCME
Order Restricted Clustering for Microarray Experiments
orddata
Generation of Artificial Ordinal and Binary Data
orderbook
Orderbook visualization/Charting software
ordiconsensus
Consensus of canonical ordinations through the canonical redundancy analysis
OrgMassSpecR
Organic Mass Spectrometry
OriGen
Fast Spatial Ancestry via Flexible Allele Frequency Surfaces
oro.asl
Rigorous - Aterial Spin Labelling
oro.dicom
Rigorous - DICOM Input / Output
oro.dti
Rigorous - Diffusion Tensor Imaging
oro.nifti
Rigorous - NIfTI+ANALYZE+AFNI Input / Output
oro.pet
Rigorous - Positron Emission Tomography
orthogonalsplinebasis
Orthogonal Bspline Basis Functions
osmar
OpenStreetMap and R
ouch
Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses
OvarianData
Ovarian Cancer TCGA Data
p3d
Plot 3d data and fitted surfaces
pack
Convert values to/from raw vectors
packfor
Forward Selection with permutation (Canoco p.46)
PairTrading
classical pair trading based on cointegration in finance
paleoPhylo
Biodiversity Analyses in a Paleontological and Phylogenetic Context
papeR
A toolbox for writing Sweave or other LaTeX-based papers and reports
ParallABEL
Parallel of Genome-Wide Association function
ParallelStructure
function to run parallel jobs in STRUCTURE
parfm
Parametric Frailty Models
parma
Portfolio Allocation and Risk Management Applications
parsec
PARtial orders in Socio-EConomics
parser
Detailed R source code parser
partDSA
Partitioning Using Deletion, Substitution, and Addition Moves
party
A Laboratory for Recursive Partytioning
partykit
A Toolkit for Recursive Partytioning
pasmae
What the package does (short line)
patches
Collection of hot patches for R
patchwork
Allele-specific Copy Number Analysis of whole genome data
patchworkCG
Allele-specific Copy Number Analysis of CompleteGenomics Whole Genome data
patchworkData
Data for patchwork package.
paternity
Paternity tests using SNPs
pathview
a tool set for pathway based data integration and visualization
pautocorr
Testing Autocorrelation and Partial Autocorrelation through Bootstrap and Surrogate Methods
pawacc
Physical activity with accelerometers
pbapply
Adding Progress Bar to '*apply' Functions
pcalg
Methods for Graphical Models and Causal Inference
PCDimension
Finding the Number of Significant Principal Components
PCLRLib
What the package does (short line)
PCM
Cloud and snow discrimination on AVHRR imagery
pco
Panel Cointegration Tests
pcurve
Principal curve analysis
pd.081229.hg18.promoter.medip.hx1
Platform Design Info for NimbleGen 081229_hg18_promoter_medip_hx1
pd.2006.07.18.mm8.refseq.promoter
Platform Design Info for NimbleGen 2006-07-18_mm8_refseq_promoter
pd.2006.10.31.rn34.refseq.promoter
Platform Design Info for NimbleGen 2006-10-31_rn34_refseq_promoter
pd.atdschip.tiling
Platform Design Info for Affymetrix Atdschip_tiling
pd.charm.hg18.example
Platform Design Info for the example charmData dataset
pdCluster
Partial Discharge Clustering
pder
panel data econometrics with R
pd.feinberg.hg18.me.hx1
Platform Design Info for the CHARM DNA methylation microarray
pd.feinberg.mm8.me.hx1
Platform Design Info for NimbleGen feinberg_mm8_me_hx1
pdfutils
PDF ultilities based on the PDF Clown Java library
pedigreemm
Pedigree-based mixed-effects models
pedigreeTools
Tools for handling pedigrees
PeerPerformance
Peer performance analysis in R
Peirce
Functions for removing outliers, with illustrations
pems
tools for the analysis and visualisation of pems data
pems.utils
Portable Emissions (and Other Mobile) Measurement System Utilities
PerFit
Person Fit
PerformanceAnalytics
Econometric Tools for Performance and Risk Analysis
p.exact
Exact P-values for Genome-Wide Association Analyses in Inbred Populations
pfda
Paired Functional Data Analysis
PFIM
Pharmacokinetic/Pharmacodynamic Fisher Information Matrix
pgfSweave
Quality speedy graphics compilation and caching with Sweave
phenopix
Process Digital Images of a Vegetation Cover
phrapl
Phylogeography using Approximate Likelihood
phtt
Panel Data Analysis with Heterogeneous Time Trends
phyext
An extension of some of the classes in phylobase. Tree objects now support subnodes on branches
phylobase
Base package for phylogenetic structures and comparative data
PhyloOrchard
Important and/or useful phylogenetic datasets
phyloRcppExamples
Examples of phylogenetic computations with Rcpp
PhysioBankR
PhysioBank R interface
Pi
Leveraging Genetic Evidence to Prioritise Drug Targets at the Gene, Pathway and Network Level
PI
Networking Genetic Evidence to Prioritise Drug Targets at the Gene, Pathway and Network Level
pi0
Estimating the proportion of true null hypotheses for FDR
picante
R tools for integrating phylogenies and ecology
Piet
DNA CNV analysis tools based on fused lasso type of model
pimdevel
Probabilistic Index Models
pimold
Probabilistic Index Models
pivotals
Functions implementing pivotal Monte Carlo methods
pkgmaker
Package development utilities
pkgutils
Utilities for Creating R Packages
PKPDa
Examples of PK/PD analysis.
PKPDx
Examples of PK/PD analysis for one subject using R, SAAM2
plantbreeding
Analysis and visualization of data from plant breeding and genetics experiments
playitbyr
Representing and exploring data through sound
plm
Linear Models for Panel Data
plot3D
Plotting Multi-Dimensional Data
plot3Drgl
Plotting Multi-Dimensional Data - Using 'rgl'
plotGoogleMaps
Plot Spatial or Spatio-Temporal Data Over Google Maps
plottools
Tools for plotting with style
plsgenomics
PLS Analyses for Genomics
plugdensity
Plug-in Kernel Density Estimation
plutils
Tools for plotting with style
pmg
Poor Man's GUI
Pmisc
Various Utilities for knitr and inla
pmoments
Partial Moments
pnl
Profit and Loss calculation for financial instruments and portfolio's.
polnet
Analysis of Political Networks.
polrep
Calculate Political Representation Scores
Polychrome
Qualitative Palettes with Many Colors
polycor
Polychoric and Polyserial Correlations
polySegratio
Simulate and test marker dosage for dominant markers in autopolyploids
polySegratioMM
Bayesian mixture models for marker dosage in autopolyploids
pomp
Statistical Inference for Partially Observed Markov Processes
poplab
Population Lab
popmoments
Population-level moments
POT
Generalized Pareto Distribution and Peaks Over Threshold
pplane
Phase plane plots of 2D nonlinear systems
ppstat
Point Process Statistics
pr2
Predictive R-squared
pracma
Practical Numerical Math Functions
PredictABEL
Assessment of risk prediction models
predIntervals
predIntervals
prefmod2
Paired Comparison Models for Preferences
prepRISA
prepRISA
PreProcess
Basic Functions for Pre-Processing Microarrays
PricingMixedTS
Option Pricing with exponential MixedTS process
primprod
Modelling Primary production based on P-I curves
probdistr
Handbook on Probability Distributions
ProbeAnnotator
Faste Gene Annotation in R
processdata
Process Data
profdpm
Profile Dirichlet Process Mixtures
profileModel
Tools for profiling inference functions for various model classes
ProstateData
Data to Illustrate the Tail-Rank Statistic
prr
generalized probabilistic range ranker
pseudoRNG
Package for pseudo random number generation.
PSM
Non-Linear Mixed-Effects modelling using Stochastic Differential Equations.
PST
Probabilistic Suffix Trees and Variable Length Markov Chains
psychobench
Supplementary package "(Psycho-)Analysis of Benchmark Experiments"
psychotree
Recursive Partitioning Based on Psychometric Models
psytabs
Produce well-formatted tables for psychological research
ptinpoly
Point-In-Polyhedron Test (2D and 3D)
punitroots
Unit Roots in Panels of Time Series
PVAClone
Population Viability Analysis with Data Cloning
PwrGSD
Power in a Group Sequential Design
PythonInR
Use Python from Within R
qaqc
Quality Assurance and Quality Control Procedures for DICOM Data
QCA3
Yet another package for Qualitative Comparative Analysis
QCqPCR
Functions for quality control of RT-qPCR data
qfa
Tools for Quantitative Fitness Analysis (QFA) of Arrayed Microbial Cultures Growing on Solid Agar Surfaces
qfaBayes
Tools for modelling the growth dynamics of arrays of large numbers of colonies and performing quantitative fitness analysis (QFA).
qmao
Quantmod Add-on
qmrobust
Quality Management: Examples from the concrete industry
qrmtools
Tools for Quantitative Risk Management
qRNASeq
What the package does (short line)
qtlDesign
Design of QTL experiments
QTLNetworkR
Interactive software package for QTL visualization
qtl.outbred
Interface for Genotype Probabilities from Outbred Intercross
Qtools
Utilities for Quantiles
QuACN
QuACN: Quantitative Analysis of Complex Networks
quaddisc
Quadratic discrepancies
quadmod
Quadratic programming modeling language
qualtrics
Qualtrics Survey Data Access
quantstrat
Quantitative Strategy Model Framework
quasiRNG
Toolbox for quasi random number generation.
queue
This packages provides an interface for a queue class along with providing a uni-process queue class.
R2admb
ADMB to R interface functions
R2BayesX
Estimate Structured Additive Regression Models with 'BayesX'
r2dRue
2d Rain Use Efficience model
R2HTML
HTML exportation for R objects
R2STATS
A GTK GUI for fitting and comparing GLM and GLMM in R
r4ss
R code for Stock Synthesis
R4X
Manipulation of XML structures
racd
Autoregressive Conditional Density Models
ragram
Radargrammetry
rAltmetric
Retrieves altmerics data for any published paper from altmetric.com
ramPATH
ramPATH
random
True random numbers using random.org
randomForest
Breiman and Cutler's random forests for classification and regression
randomSubspace
Random Subspace
randtoolbox
Toolbox for Pseudo and Quasi Random Number Generation and RNG Tests
RandVar
Implementation of Random Variables
rangeMapper
A platform for the study of macroecology of life history traits
Rankcluster
Model-Based Clustering for Multivariate Partial Ranking Data
rasterExt
raster and external programs (FWtools, ArcGIS)
rasterFW
raster and FWtools
rasterVis
Visualization methods for the raster package
raw.means.plot
Raw-Means Plots for Experimental Designs
R.batch
Methods to run batch jobs in R
RBigQuery
BigQuery for R
Rbooks
Interactive course notes using R
rbrothers
rbrothers: multiple change-point recombination detection
rbsa
Ancillary Functions for R Programming
rbsb
set of ancillary functions
rcdklibs
rcdklib - CDK libraries packaged for R
rcicr
Reverse-Correlation Image-Classification Toolbox
Rcmdr
R Commander
Rcmdr1
R Commander
Rcmdr2
R Commander
Rcmdr205
R Commander
RcmdrDevel
R Commander
rcmdrfuzzyclust
R Commander Plug-in for Fuzzy Clustering Methods (Fuzzy C-Means and Gustafson Kessel)
RcmdrMisc
R Commander Miscellaneous Functions
RcmdrPlugin.BiclustGUI
'Rcmdr' Plug-in GUI for Biclustering
RcmdrPlugin.BiclustGUI.Extra
Title: 'Rcmdr' Plug-in GUI for Biclustering
RcmdrPlugin.EcoVirtual
Rcmdr EcoVirtual Plugin
RcmdrPlugin.FactoMineR
Graphical User Interface for FactoMineR
RcmdrPlugin.FuzzyClust
R Commander Plug-in for Fuzzy Clustering Methods (Fuzzy C-Means and Gustafson Kessel)
RcmdrPlugin.lfstat
Rcmdr Plug-in for Low Flow Analysis
RcmdrPlugin.NMBU
R Commander Plug-In for statistics at NMBU
RcmdrPlugin.SensoMineR
Graphical User Interface for SensoMineR
RcmdrPlugin.sos
Efficiently search the R help pages
RcmdrPlugin.survival
R Commander Plug-in for the 'survival' Package
RcmdrPlugin.TeachingDemos
Rcmdr Teaching Demos Plug-in
RcmdrPlugin.temis
Graphical Integrated Text Mining Solution
RcmdrPlugin.UCA
UCA Rcmdr Plug-in
RcmdrPlugin.UMB
R Commander Plug-In for statistics at UMB
rcolgem
statistical inference and modeling of genealogies generated by epidemic and ecological processes
rcolony
Tools for implementation and visualisation of Colony2 and its outputs.
Rcpp
Seamless R and C++ Integration
RcppArmadillo
Rcpp integration for Armadillo templated linear algebra library
RcppBDT
Rcpp bindings for the Boost Date_Time library
RcppClassic
Deprecated 'classic' Rcpp API
RcppClassicExamples
Examples using RcppClassic to interface R and C++
RcppCNPy
Rcpp bindings for NumPy files
RcppDE
Global optimization by differential evolution in C++
RcppExamples
Examples using Rcpp to interface R and C++
RcppGSL
Rcpp integration for GNU GSL vectors and matrices
RcppModels
Classes for linear and generalized linear and nonlinear models
RcppProgress
An interruptible progress bar with OpenMP support for c++ in R packages
RcppProgressExample
Example use of the RcppProgress package
RcppRandomSFMT
A R and Rcpp interface to the SIMD-oriented Fast Mersenne Twister (SFMT) Random Number Generator provided by http://www.agner.org/random Randomc.
RcppSMC
Rcpp bindings for Sequential Monte Carlo
RcppXts
Interface the xts API via Rcpp
Rcsdp
R interface to the CSDP semidefinite programming library
RCSI
An S4 interface to the CSI UA API
RDEC
RDEC -- regression with damped exponential correlation
Rdonlp2
An R extension library to use Peter Spelluci's DONLP2 from R.
rds2
Population size and degree distribution estimation in respondent driven sampling.
rdyncall
Improved Foreign Function Interface (FFI) and Dynamic Bindings to C Libraries (e.g. OpenGL)
ReacTran
Reactive Transport Modelling in 1d, 2d and 3d
ReadqPCR
Read qPCR data
realized
Realized
rebastaba
Handling Bayesian networks
rebmix
Finite Mixture Modeling, Clustering & Classification
recommenderlabBX
Book-Crossing Dataset (BX) for recommenderlab
recommenderlabJester
Jester Dataset for 'recommenderlab'
recommenderlabMahout
Developing and testing Recommender Algorithms using Apache Mahout and R
RecSelect
Using GRTS to sample along time
REddyProc
Data processing and plotting utilities of (half-)hourly eddy-covariance measurements
ref
References for R
refund.wave
Wavelet-Domain Regression with Functional Data
regr0
Building regression models
rehh
Searching for footprints of selection using Haplotype Homozygosity based tests
REIDS
Random Effects for the Identification of Differential Splicing
related
related: an R package for analyzing pairwise relatedness data based on codominant molecular markers
Reliability
Functions for estimating parameters in software reliability models
RemoteREngine
RMI based REngine implementation
RemoteSensing
Remote Sensing
rentrez
Entrez in R
reo
Random effects ordination
Reol
R interface to the Encyclopedia of Life
RepeatABEL
GWAS for Multiple Observations on Related Individuals
replicationgraph
Replication graph
ResourceSelection
Resource Selection (Probability) Functions for Use-Availability Data
RespChamberProc
Processing data from respiration chambers
REST
RcmdrPlugin Easy Script Templates
restorepoint
Debugging with restore points
rfFC
Random Forest Feature Contributions
RFLPtools
Tools to analyse RFLP data
RForgeTools
R-Forge Build and Check Tools
rfTools
R-Forge Build and Check Tools
rgarch
Flexible GARCH modelling in R
Rgears
Various R utility functions.
RGIFT
Create quizzes in GIFT Format
rgl
3D Visualization Using OpenGL
rglwidget
'rgl' in 'htmlwidgets' Framework
rgmdh
group method of data handling
RgoogleMaps
Overlays on Static Maps
rgraph6
Interface to graph6 format for R
rgrass7
Interface Between GRASS 7 Geographical Information System and R
rgrs
Functions to make R usage in social sciences easier (in french)
RGtk2Extras
Data frame editor and dialog making wrapper for RGtk2
rHanso
An R Implementation of Hybrid Algorithm for Non-Smooth Optimization (HANSO)
rhr
Package to estimate home ranges through a graphical user interface.
RHRV
Heart Rate Variability Analysis of ECG Data
rhte
Robust Horvitz-Thompson Estimation
RHydro
Classes and methods for hydrological modelling and analysis
RHydroWasimData
Example data to demonstrate RHydro for WaSiM-ETH
RiceMap
Mapping rice area with time series of MODIS images
rich
Computes and Compares Species Richnesses
rieger
Radiation data of Reiger et al (2004)
RImageJ
R bindings for ImageJ
rImfil
An R Implementation of Implicit filtering algorithm
rinat
Access iNaturalist data through APIs
Rinfo
R package usage statistics
RiskBasedPortfolios
Computation of risk-based portfolios
riskPlots
Risk plots
RiskPortfolios
Computation of Risk-Based Portfolios
RiverSurvey
River Research and Modelling
RJEMM
R Implementation of Java Extensible Markov Models
rjpod
PDF ultilities based on the jPod Java library
rJython
R interface to Python via Jython
RLadyBug
Analysis of Infectious Diseases using Stochastic Epidemic Models
rLiDAR
LiDAR Data Processing and Visualization
rlogit
Random parameters logit model
RlpSolve
Interface to Lp_solve v. 5.5 to solve linear/integer programs
RlpSolveAPI
Interface to lp_solve v. 5.5
RMacoqui
Identifying and describing chorotypes based on similarity between species distributions
rmgarch
Multivariate GARCH models
RMixtComp
Mixture Composer
rmmseg4j
R interface to the Java Chinese word segmentation system of mmseg4j
RMonetDB
Provides access to MonetDB through the JDBC interface
Rmpfr
R MPFR - Multiple Precision Floating-Point Reliable
rm.plot
Raw-Means Plots for Experimental Designs
rmv
Multivariate random number generation
RnavGraphImageData
Some image data used in the RnavGraph package demos
RNetLogo
Provides an Interface to the Agent-Based Modelling Platform NetLogo
rngSFMT2
SFMT random number generator
rngtools
Utility functions for working with Random Number Generators
rngWELL
Toolbox for WELL Random Number Generators
rngWELLOriginal
Well Equidistributed Long-period Linear modulo 2 random number generators by F. Panneton, P. L'Ecuyer, and M. Matsumoto.
Rnlminb2
An R extension library for constrained optimization with nlminb.
RNMImport
Tools for importing and manipulating NONMEM data.
rnso
An R Implementation of Hybrid Algorithm for Non-Smooth Optimization (HANSO)
RobAStRDA
Interpolation Grids for Packages of the 'RobASt' - Family of Packages
RobExtremes
Optimally Robust Estimation for Extreme Value Distributions
robKalman
Robust Kalman Filtering
RobRex
Optimally robust influence curves for regression and scale
RObsDat
Store your observations: R-Package to the Observations Data Model from CUAHSI
robts
Robust Time Series Analysis
robust
Port of the S+ "Robust Library"
robustbase
Basic Robust Statistics
robustDist
Calculation of labeled molecular distances robust to certain model misspecification
robustX
eXtra / eXperimental Functionality for Robust Statistics
rodbcExt
RODBC Extension
ROI
R Optimization Infrastructure
ROI.models.netlib
'ROI' Optimization Problems based on 'NETLIB'
ROI.plugin.ecos
ROI-Plugin ECOS
ROI.plugin.optimx
'ROI'-Plugin 'optimx'
ROML
R Optimization Modeling Language
ROML.portfolio
ROML-Portfolio-Optimization
rootoned
Roots of one-dimensional functions in R-only code
rootSolve
Nonlinear Root Finding, Equilibrium and Steady-State Analysis of Ordinary Differential Equations
ROptEst
Optimally Robust Estimation
Ross
Ross Ordering
roxygen
Literate Programming in R
Rpad
Workbook-style, web-based interface to R
rpaoding
R interface to the Java Chinese word segmentation system of paoding
rpdfclown
PDF ultilities based on the PDF Clown Java library
RpepXML
R interface to the pepXML standard
rpg
Easy Interface to Advanced PostgreSQL Features
Rphree
Interface to the geochemical modelling program PHREEQC
rPithon
Use Python by Communicating Using a Pipe
rpkgstats
R package usage statistics
rPlant
R interface to the Agave and Foundation API
rpnf
Point and Figure Package
RPPanalyzer
Reads, Annotates, and Normalizes Reverse Phase Protein Array Data
rProcessing
Simple R/Processing Interface
Rproj4
Rproj4
rptR
Repeatability for Gaussian and non-Gaussian data
rpubchem
rpubchem - Interface to the PubChem Collection
rpubmed
rpubmed
RQDA
R-based Qualitative Data Analysis
RQDAtm
A package to bridge RQDA and tm
rqpd
Regression Quantiles for Panel Data
Rquadprog
An R extenstion library to use quadprog for portfolio Optimization
RQuantLib
R interface to the QuantLib library
RRegArch
General univariate ARCH models simulation and estimation
RRM
Implementation of ReliaSoft Ranking Method
rrMisc
Little Helpers
rrp
Random Recursive Partitioning
rsae
Robust Small Area Estimation
Rsafd
Statistical Analysis of Financial Data in R
rSALMO
Simulation of ecological lake models
rsap
Basic Statistics and Data Analysis
rseg
recursive segmentation (rseg)
rsem
Robust Structural Equation Modeling with Missing Data and Auxiliary Variables
Rshare
Shared environment across multiple independent R sessions
RSiena
Siena - Simulation Investigation for Empirical Network Analysis
RSienaTest
Siena - Simulation Investigation for Empirical Network Analysis
RSiteSearch
RSiteSearch
rsmartcn
R interface to the Java Chinese word segmentation system of smartcn
Rsocialdata
Handling survey data in R. (official release)
Rsocialdata0
Handling survey data in R. (beta version, not for use)
Rsocialdata.network
Network tools for the Rsocialdata package
Rsocp
An R extenstion library to use SOCP from R.
Rsolnp
General Non-Linear Optimization
Rsolnp2
Non-linear Programming with non-linear Constraints
rspecies
Multivariate Methods in Ecology with R: Simulating Communities
rstats
R package usage statistics
Rstem
Interface to Snowball implementation of Porter's word stemming algorithm.
rsubgroup
Subgroup Discovery and Analytics
R.synchronize
Synchronious locking mechanisms
rtanalyze
RTanalyze, reaction times storage and analysis.
RTCGAToolbox
A new tool for exporting TCGA Firehose data
rtest
unit and system testing for R
rtkore
STK++ Core Library Integration to R using Rcpp
RTmodels
Utility function for modeling and simulation of (sub-second) response times in cognitive psychology
Rtnmin
Truncated Newton Function Minimization with Bounds Constraints
rtop
Interpolation of Data with Variable Spatial Support
rts
Raster Time Series Analysis
Rtts
Convert Text into Speech
RttsDevelop
Convert Text into Speech (Voice Files in .mp3, .flv, and .wav Format)
rugarch
Univariate GARCH models
ruleR
Generating numeric sequence items for intelligence tests
rusquant
Financial Modelling Framework extension for Russian stock market
russmisc
A repository for a variety of useful functions.
Rvmminx
Variable metric nonlinear function minimization with bounds constraints - experimental
RVowpalWabbit
R interface to the Vowpal Wabbit
Rwave
Time-Frequency analysis of 1-D signals
RWeather
R wrapper around the Yahoo! Weather, Google Weather and NOAA APIs
Rweibo
An interface to the Weibo open platform
RWOAG
Performs a Random Walk on a Graph
Rwordseg
Chinese word segmentation
rworldmap
Mapping global data, vector and raster.
rworldxtra
Country boundaries at high resolution.
RXKCD
Get XKCD comic from R
s4vd
Biclustering via Sparse Singular Value Decomposition Incorporating Stability Selection
SACCR
SA Counterparty Credit Risk under Basel III
safeBinaryRegression
Safe Binary Regression
sampSurf
Sampling Surface Simulation for Areal Sampling Methods
sandwich
Robust Covariance Matrix Estimators
sapa
Spectral Analysis for Physical Applications
SASmixed
Data sets from "SAS System for Mixed Models"
SATK
Scaling Analysis Toolkit
sbfac
Semiparametric Bayesian Factor Analytic Copula Models
SBMLModels
A collection of SBML Models with some experimental and simulated datasets.
SBSA
Simplified Bayesian Sensitivity Analysis
scan
Single-Case Data Analyses for Single and Multiple AB Designs
scatterplot3d
3D Scatter Plot
schwartz97
A package on the Schwartz two-factor commodity model
SCiAn
Spectrophotometry : CInetic ANalysis
SciencePo
Political Behaviour Analysis Tool
scimapClient
Collects and Reports Usage Data on R Packages
scoring
Proper Scoring Rules
scpt
Change Point Test for Spatio-Temporal Functional Data
scriptests
Transcript-Based Unit Tests that are Easy to Create and Maintain
SDaA
Sampling: Design and Analysis
sdafe
Companion to Statistics and Data Analysis for Financial Engineering
sde
Simulation and Inference for Stochastic Differential Equations
sdm
Species Distribution Modelling
sdmo
Species Distribution Modelling (old version)
seacarb
Calculates parameters of the seawater carbonate system
sealevel
Utility functions for reading and analyzing trends in common used sealevel archives.
SearchTrees
Spatial Search Trees
season
Seasonal analysis of health data
seedDisp
Dispersal of seed routines
SegAnnot
Annotation-aware segmentation via dynamic programing
Segmentor3IsBack
A Fast Segmentation Algorithm
selectivity
My First Collection of Functions
SelvarMix
Regularization for Variable Selection in Model-Based Clustering and Discriminant Analysis
sem1
Structural Equation Models
sem3
Structural Equation Models
semdiag
Structural equation modeling diagnostics
semPLSModelSelection
Structural Equation Modeling Using Partial Least Squares
semspec
Unified Specification of Structural Equation Models
sensitivity
Sensitivity Analysis
sensitivityPStrat
Principal Stratification Sensitivity Analysis Functions
SensoMineR
Sensory data analysis with R
SeqCNVCBS
Scan Statistics for CNV Detection with CBS
seqdist2
Distance Between State Sequences
seqinr
Biological Sequences Retrieval and Analysis
seqTools
Analysis of nucleotide, sequence and quality content on fastq files.
setRNG
Set (Normal) Random Number Generator and Seed
sGE
Segmentation of GE data
sglOptim
Sparse group lasso generic optimizer
SglOptimizer
Sparse group lasso optimizer
shape
Functions for Plotting Graphical Shapes, Colors
sharpshootR
A Soil Survey Toolkit
sharx
Models and Data Sets for the Study of Species-Area Relationships
SIBER
Systematic Identification of Bimodally Expressed Genes Using RNAseq Data
SIGIL
Data Sets and Utility Functions for the 'SIGIL' Course
SII
Calculate ANSI S3.5-1997 Speech Intelligibility Index
simdat.base
Simulating data in R
simdat.gui
Shiny GUIs for the simdat.base data simulation package
simecol
Simulation of Ecological (and Other) Dynamic Systems
simecolModels
Model collection for the simecol package
simecolUtil
Collection of Helper Utilities
simfms
Simulation of clustered multi-state data
simplace
Interface to use the modelling framework SIMPLACE
simsalabim
A collection of methods for time series analysis and signal detection.
sintro
Introduction to R: sintro
sirad
Functions for Calculating Daily Solar Radiation and Evapotranspiration
sjemea
Multi electrode analysis
skellam
Densities and Sampling for the Skellam Distribution
SkewHyperbolic
The Skew Hyperbolic Student t-Distribution
Sleuth2
Data Sets from Ramsey and Schafer's "Statistical Sleuth (2nd Ed)"
Sleuth3
Data Sets from Ramsey and Schafer's "Statistical Sleuth (3rd Ed)"
SlideDesignerGUI
Slide Designer GUI Package
SMCS4
Sequential Monte Carlo samplers in S4
smd
Sparse Multivariate Diffusions
smde
Sparse Multivariate Differential Equations
smfsb
SMfSB 2e: Stochastic Modelling for Systems Biology, second edition
SmoothHazard
Smooth models for interval-censored data with applications to survival and illness-death models
snatm
Combine Social Network Analysis and Text Mining
snopgof
Single-observation NOn-Parametric Goodness Of Fit
SNPRelate
Parallel Computing Toolset for Genome-Wide Association Studies (GWAS)
SobolIndices
Computing the Sobol Indices
SobolSensitivity
Computing the Sobol Sensitivity Indices
softclassval
Soft Classification Performance Measures
softmaxreg
Training Multi-Layer Neural Network for Softmax Regression and Classification
soilDB
Soil Database Interface
SoilR
Models of Soil Organic Matter Decomposition
soils
spatial soil data related functions
soil.spec
Soil Spectroscopy Tools and Reference Models
solaR
Solar Photovoltaic Systems
sonicLength
Estimating Abundance of Clones from DNA fragmentation data
sorvi
sorvi - avoimen datan tyokalupakki
sos
Search Contributed R Packages, Sort by Package
spacemakeR
Spatial modelling
SparseGrid
Sparse grid integration in R
sparseLDA
Sparse Discriminant Analysis
spatialClust
Spatial Clustering using Fuzzy Geographically Weighted Clustering
SpatialExtremes
Modelling Spatial Extremes
spatialkernel
Nonparametric estimation of spatial segregation in a multivariate point process
spatial.tools
R Functions for Working with Spatial Data
SpaTimeClus
Model-Based Clustering of Spatio-Temporal Data
spcopula
Copula Driven Spatio-Temporal Analysis
spd
Semi Parametric Distribution
spdep
Spatial Dependence: Weighting Schemes, Statistics and Models
spdyn
Exploratory space-time data analysis
specfun
Special Functions
specif
Word Specificity
SpecLibDolphin2011
Mass Spectral Library Dolphin Blubber 2011
SpecLibExample
Example OrgMassSpecR Mass Spectral Library
spectral.methods
Singular Spectrum Analysis (SSA) Tools for Time Series Analysis
spectro
Spectroscopy data analysis
speedR
A GUI based importing and filtering tool
speedRlibs
Package containing the required libraries (jars) for speedR
speedRlibTF
speedR's table filter library
spfrontier
Spatial Stochastic Frontier Models
spgrass
Interface between GRASS 7+ geographical information system and R
spgrass7
Interface between GRASS 7 Geographical Information System and R
sphet
Estimation of Spatial Autoregressive Models with and without Heteroskedastic Innovations
spider
Species Identity and Evolution in R
spiderDev
Species Identity and Evolution in R--development
spinyReg
Sparse Generative Model and Its EM Algorithm
splancs
Spatial and Space-Time Point Pattern Analysis
splinesurv
Nonparametric bayesian survival analysis
splits
SPecies' LImits by Threshold Statistics
splm
Econometric Models for Spatial Panel Data
splus2R
Supplemental S-PLUS functionality in R
spnet
Plotting (Social) Networks on Maps
SportsAnalytics
Infrastructure for Sports Analytics
spring
Fit the SPRING model
sprof
Profiling, timing and optimisation utilities
spse
Spatial Simultaneous Equations and Spatial Sur Model
sqliteTools
sqliteTools
sqlsurvey
analysis of very large complex survey samples (experimental)
SQN
subset quantile normalization
SQUAREM
Squared extrapolation methods for accelerating fixed-point iterations
SRS
Subject Randomization System
ssa
Singular Spectrum Analysis
sse
Sample Size Estimation
stabledist
Stable Distribution Functions
stablelearner
Stability Assessment of Statistical Learning Methods
stacomiR
Fish Migration Monitoring (stacomiR)
stacomirtools
ODBC Connection Class for Package stacomiR
STAR
Spike Train Analysis with R
STARStools
R functions for working spatial/remote sensing data.
Stat2Data
Datasets for Stat2
statcomp
Statistical Complexity and Information Measures for Time Series Analysis
STdiag
Functions to Plot a Structure-Time Diagram
stocks
Fast Functions for Stock Market Analysis
stops
STructure Optimized Proximity Scaling
stosim
Stochastic Simulator for Reliability Modeling of Repairable Systems
stpp
Space-Time Point Pattern simulation, visualisation and analysis
strat
Functions and data useful for social stratification research
StrategySwitch
Strategy Switch Model
streamFPM
Implementation of Frequent Pattern Mining for stream
streamMovingGenerator
Moving Generator
streamtNNfast
Fast implementation for tNN in stream
stringi
THE string processing package for R
StructureTimeDiagram
This package provides functions to plot a structure-time diagram
StudyPrior
Distributions for Historical Information
subgroup
Obsoleted package - use rsubgroup!
subgroup.discovery
Obsoleted package - use rsubgroup!
subplex
Subplex Optimization Algorithm
summarize
Summarize distributions in a concise way
Sunclarco
Survival Analysis using Copula's
superbiclust
Generating Robust Biclusters from a Bicluster Set (Ensemble Biclustering)
SuperCurve
RPPA Analysis Package
SuperCurveGUI
'SuperCurve' GUI Package
SuperCurveSampleData
SuperCurve RPPA Sample Data
supraHex
A Supra-Hexagonal Map for Analysing Tabular Omics Data
SURDES
Functions for a stratified SURvey DESign
surrosurv
Evaluation of Failure Time Surrogate Endpoints in Individual Patient Data Meta-Analyses
survbart
Survival analysis with BART
surveillance
Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic Phenomena
survey
Analysis of Complex Survey Samples
SurveyCode
What the package does (short line)
survGenesInterim
Simulation of Survival Studies with Microarray Data
survMisc
Miscellaneous Functions for Survival Data
Survomatic
Analysis of longevity data.
SVILD
Summaries of Variability of Irregularly Spaced Longitudinal Data
swale
SWALE: Simultaneous Waveform Amplitude and Latency Estimation.
swissMrP
Multilevel Regression with Post-Stratification for Switzerland
synbreed
Framework for the Analysis of Genomic Prediction Data using R
synchronicity
Boost mutex functionality for R.
synchrony
Methods for computing spatial, temporal, and spatiotemporal statistics
synDss
Recombination detection using synonymous distances
SynergizeR
Interface to The Synergizer service for translating between sets of biological identifiers.
systemfit
Estimating Systems of Simultaneous Equations
tab
Functions for Creating Summary Tables for Statistical Reports
tables
Formula-Driven Table Generation
TailRank
The Tail-Rank Statistic
tao
The great Tao package
TAPS
Tumor Abberation Prediction Suite
tclish
'Tcl/Tk' Utilities Package
tdisplay
Tool Box for Data Importation and Display
TeachingDemos
Demonstrations for Teaching and Learning
termstrc
Zero-coupon Yield Curve Estimation
ternaryplot
Infrastructure for ternary plots and ternary classifications (S3-classes)
test
test
testcpp
Testing external pointers with finalization in R using C++
texmex
Threshold exceedences and multivariate extremes
texreg
Conversion of R Regression Output to LaTeX or HTML Tables
tfMiscDevel
Time Frame Extensions (in Development)
tfplot
Time Frame User Utilities
tframe
Time Frame Coding Kernel
tframePlus
Time Frame Coding Kernel Extensions
TFX
R API to TrueFX(tm)
TH.priv
TH's private functions
Thresher
Threshing and Reaping for Principal Components
Tides
Tides
tikzDevice
R Graphics Output in LaTeX Format
timebart
timebart: Survival Analysis with BART
timeDate
Rmetrics - Chronological and Calendar Objects
timeSeries
Rmetrics - Financial Time Series Objects
TimeWarp
Date Calculations and Manipulation
TIMP
Fitting Separable Nonlinear Models in Spectroscopy and Microscopy
titanQC
QC Procedures for the GeneTitan platform
tkrgl
TK widget tools for rgl package
tldutils
Various utility functions
tlocoh
Constructs homeranges and explores time use patterns from location data
tlocoh.dev
Development package for tlocoh
tm
Text Mining Package
tmcn
A Text mining toolkit for international characters especially for Chinese.
tmcn.crfpp
R interface to CRF++ for conditional random fields
tmcn.word2vec
R interface to word2vec
tmdl
Flow and Load Duration Curve plots for TMDL
tme
Teaching Marketing Engineering with R
tm.plugin.sentiment
Text corpus sentiment analysis
TopKLists
Inference, Aggregation and Visualization for Top-K Ranked Lists
tourr
Implement tour methods in pure R code
toyRpkg
Toy R package
traceRkinetic
Kinetic analysis for dynamic nuclear imaging: compartmental models
track
Store Objects on Disk Automatically
tradesys
Trading System Modelling
Trading
Trades, Curves, Rating Tables, Add-on Tables, CSAs
trajectories
classes and methods for trajectory data
TraMineR
Trajectory Miner: a Toolbox for Exploring and Rendering Sequences
TraMineRextras
TraMineR Extension
travelr
Functions for Travel Demand Modeling
TreeHotspots
Hotspot Detection using Classification Trees
triangle
Provides the standard distribution functions for the triangle distribution
trim
Tree methods for classification of imbalanced data
tripEstimation
Metropolis sampler and supporting functions for estimating animal movement from archival tags and satellite fixes
TrueFX
R API to TrueFX
TruncatedDistributions
Use Truncated Distribution functions
TSAgg
Time series Aggregation
TScompare
'TSdbi' Database Comparison
tscount
Analysis of Count Time Series
TSdbi
Time Series Database Interface
TSfame
'TSdbi' Extensions for Fame
TSjson
'TSdbi' Extension to Import Time Series from Web Sources via JSON
tsk
Trimmed Spearman-Karber Method
TSmisc
'TSdbi' Extensions to Wrap Miscellaneous Data Sources
TSmisc2
Additional 'TSdbi' Extensions to Wrap Miscellaneous Data Sources
TSMySQL
'TSdbi' Extensions for 'MySQL'
TSPostgreSQL
'TSdbi' Extensions for 'PostgreSQL'
TSsdmx
'TSdbi' Extension to Connect with 'SDMX'
TSSP
Two-Stage Stochastic Programs
TSsql
Generic SQL Helper Functions for 'TSdbi' SQL Plugins
tstPkg1
Test Package 1
tstPkg2
Test Package 2
tth
TeX to HTML/MathML Translators TtH/TtM
TTR
Technical Trading Rules
tuneR
Analysis of music and speech
twang
Toolkit for Weighting and Analysis of Nonequivalent Groups
twConfig
Cascading configuration files
twDEMC
parallel DEMC
twinlm
Linear models for twin data
twMisc
Utility functions of tw
twMiscRgl
tw 3D utility functions
twModMeta
Support for array based state variables in ODE.
twNlme
Standard errors for basic nlme and gnls model predictions
twopiece
The family of two piece distributions
twsInstrument
Improves ease of use of IBrokers and FinancialInstrument
twSnowfall
tw snowfall extension
ucminf
General-purpose unconstrained non-linear optimization
Umpire
Umpire Package
UncertWebRTools
collection of useful R functions in the UncertWeb
uniaxialOptics
Modelling multilayer anisotropic stacks
unknownR
You didn't know you didn't know?
urca
Unit Root and Cointegration Tests for Time Series Data
uroot
Unit Root Tests and Graphics for Seasonal Time Series
UScensus2000
US Census 2000 Suite of R Packages
UScensus2000blkgrp
US Census 2000 Block Group Shapefiles and Additional Demographic Data
UScensus2000cdp
US Census 2000 Designated Places Shapefiles and Additional Demographic Data
UScensus2000tract
US Census 2000 Tract Level Shapefiles and Additional Demographic Data
UScensus2010
US Census 2010 Suite of R Packages
UScensus2010blkgrp
US Census 2010 Block Group Level Shapefiles and Additional Demographic Data
UScensus2010cdp
US Census 2010 Blockgroup Level Shapefiles and Additional Demographic Data
UScensus2010county
US Census 2010 County Level Shapefiles and Additional Demographic Data
UScensus2010tract
US Census 2010 Tract Level Shapefiles and Additional Demographic Data
usdm
Uncertainty analysis for species distribution models
USlobbying
Documents Filed under the US Lobbying Disclosure Act
utilsag
Datasets and utility functions.
varComp
Variance Component Models
variables
Variable Descriptions
VarianceGamma
The Variance Gamma Distribution
VarSelLCM
Variable Selection for Model-Based Clustering of Continuous, Count, Categorical or Mixed-Type Data Set with Missing Values
vbv
Time series decomposition with VBV (Verallgemeinertes Berliner Verfahren)
vcdExtra
'vcd' Extensions and Additions
vcrpart
Tree-Based Varying Coefficient Regression for Generalized Linear and Ordinal Mixed Models
Vdgraph
Variance dispersion graphs and Fraction of design space plots for response surface designs
vectis
Modified Statistical Tools
vegan
Community Ecology Package
vegsoup
Classes and Methods for Phytosociology
Vennerable
Venn and Euler area-proportional diagrams
vGWAS
Variance Heterogeneity Genome-Wide Association Study
virta
Virtual tables for RSQLite
VirtualCom
Assembling virtual plant communities
VisCount
R package for training and evaluating visual count estimates
VPA
Variant Pattern Analyzer for next-generation sequencing study
vsa
Vector Symbol Architectures for AI & CogSci
VwGHat
Mining Austrian administrative court rulings
WaterMap
Mapping evapo-transpiration from satellite images.
WaveSeqR
A Wavelet-based Method for ChIP-Seq peak calling
waveslim
Basic Wavelet Routines for One-, Two- and Three-dimensional Signal Processing
waveTiling
Wavelet-Based Models for Tiling Array Transcriptome Analysis
waveTilingData
waveTiling Example Data
weather
Weather data manipulation
weatherData
obtain daily weather data
webmaps
Create HTML Web maps
WeightedCluster
Clustering of Weighted Data
weimea
Weighted mean of species attributes
WIDataRipper
WaterInfo Data Ripper
wls
Iteratively Re-Weighted Least Squares
WMCapacity
GUI implementing Bayesian working memory models
wmtsa
Wavelet Methods for Time Series Analysis
word.alignment
Finding Word Alignment Using IBM model 1 for a Given Parallel Corpus and Its Evaluation
wordcloud
Word Clouds
wordspace
Distributional Semantic Models in R
WriteXLS
Cross-platform Perl based R function to create Excel 2003 (XLS) files
WRS
A package of R.R. Wilcox' robust statistics functions
WRS2
A Collection of Robust Statistical Methods
wtJonckheere
Non-parametric Jonckheere-Terpstra trend test on weighted data
WWGbook
Datasets and scripts for WWGbook.
XGR
Exploring Genomic Relations for Enhanced Interpretation Through Enrichment, Similarity, Network and Annotation Analysis
xgrid
Access Apple Xgrid using R
xkcd
Plotting ggplot2 graphics in a XKCD style
xmetric
X-METRIC Multi-Echelon Techniques for Replaceable Inventory Control
XMLRPC
Remote Procedure Call (RPC) via XML in R
xmlschemaHelper
Tools for reading XML Schema within R
xterm256
Support for xterm256 escape sequences
Xtratsfa
Time Series Factor Analysis Extra Functions
xts
eXtensible Time Series
xtsExtra
Supplementary Functionality for xts
xVA
Calculates Credit Risk Valuation Adjustments
yags
Yet Another GEE Solver
yaImpute
Nearest Neighbor Observation Imputation and Evaluation Tools
YaleToolkit
Data exploration tools from Yale University.
yang
Microarray GDS1887 DATA
yapomif
Yet another package of misc functions
yarr
Extensible Framework for R Reporting
yasomi
Yet Another Self Organising Map Implementation
YieldCurve
Modelling and estimation of the yield curve
YplantQMC
Plant architectural analysis with Yplant and QuasiMC.
yuima
The YUIMA Project Package for SDEs
yuimaGUI
A Graphical User Interface for the Yuima Package
Zar5
Data sets from Biostatistical Analysis
zenplots
Zigzag Expanded Navigation Plots
ziLRhClust
Hierarchical Clustering Based on Log-Likelihood Ratio for Zero-Inflated Data
zipfR
Statistical models for word frequency distributions
zoo
S3 Infrastructure for Regular and Irregular Time Series (Z's Ordered Observations)
zooExtra
Supplementary Functionality for zoo Time Series