# All R packages

- a4Core
- Automated Affymetrix Array Analysis Core Package
- a4Reporting
- Automated Affymetrix Array Analysis Reporting Package
- abd
- The Analysis of Biological Data
- abind
- Combine Multidimensional Arrays
- abmi
- Data Processing and Analysis for the Alberta Biodiversity Monitoring Institute
- abmiOld
- Data Processing and Analysis for the Alberta Biodiversity Monitoring Institute
- abrem
- Abernethy Reliability Methods
- abremDebias
- Maximum Likelihood Estimation Models for Reliability Analysis
- abremout
- Output functions for the Abernethy Reliability Methods package (abrem), including plotting.
- abremPivotals
- Linear Rank Regression Models with Pivotal Monte Carlo Methods for Reliability Analysis
- accelerometry
- Functions for Processing Minute-to-Minute Accelerometer Data
- AcceptABEL
- A package for controlling false positives rate in GWAS by estimating local inflation factor
- ACEt
- Estimating Dynamic Heritability and Twin Model Comparison
- acnr
- Annotated Copy-Number Regions
- adagio
- Discrete and Global Optimization Routines
- ade4
- Analysis of Ecological Data : Exploratory and Euclidean Methods in Environmental Sciences
- ade4TkGUI
- 'ade4' Tcl/Tk Graphical User Interface
- adegraphics
- An S4 Lattice-Based Package for the Representation of Multivariate Data
- adephylo
- adephylo: exploratory analyses for the phylogenetic comparative method.
- adespatial
- Multivariate Multiscale Spatial Analysis
- ADGofTest
- Anderson-Darling GoF test
- admbsecr
- SECR models with supplementary location information
- advclust
- Object Oriented Advanced Clustering
- advfclust
- Fuzzy Clustering (Ensembling and Optimization)
- AEM
- Tools to construct Asymmetric eigenvector maps (AEM) spatial variables
- afe
- Analysis of Factorial Experiments
- afex
- Analysis of Factorial Experiments
- AFLP
- Analysis of AFLP data
- agrmt
- Calculate Agreement or Consensus in Ordered Rating Scales
- ALA
- Data sets and examples for the book "Applied Longitudinal Analysis"
- alabama
- Constrained nonlinear optimization
- alfa
- Apache Log File Analysis
- alpha
- Robust Cronbach's alpha with missing and non-normal data
- alplot
- Plot array lists
- alr
- alternating logistic regression
- alr3
- Data to accompany Applied Linear Regression 3rd edition
- alr4
- Data to accompany Applied Linear Regression 4th edition
- ambur
- Analyzing Moving Boundaries Using R
- amburhva
- AMBUR-HVA
- Animal
- Analyze time-coded animal behavior data
- ANN
- Feedforward Artificial Neural Network optimized by Genetic Algorithm
- ant
- Version of ant specific to R
- apicultuR
- A wrapper to the apicultuR set of APIs for NLP in Spanish
- AppliedPredictiveModeling
- Functions and Data Sets for 'Applied Predictive Modeling'
- APR
- Applied Psychometrics With R
- aqp
- Algorithms for Quantitative Pedology
- aqr
- Interface methods to use with an ActiveQuant Master Server
- AquaEnv
- Integrated Development Toolbox for Aquatic Chemical Model Generation
- archetypes
- Archetypal Analysis
- arf3DS4
- Activated Region Fitting, fMRI data analysis (3D).
- arfS4
- Activated Region Fitting, fMRI data analysis.
- arm
- Data Analysis Using Regression and Multilevel/Hierarchical Models
- aroma.apd
- A probe-level data file format used by aroma.affymetrix [DEPRECATED]
- aroma.tcga
- Methods for accessing online The Cancer Genome Atlas (TCGA) data
- array
- Array factor for 2D periodic arrays
- arrayhelpers
- Convenience Functions for Arrays
- arulesNBMiner
- Mining NB-Frequent Itemsets and NB-Precise Rules
- arulesViz
- Visualizing Association Rules and Frequent Itemsets
- arulesVizOld
- arulesViz - Visualizing Association Rules and Frequent Itemsets
- ASAtable
- Model-output formatter for sociological research.
- aspect
- A General Framework for Multivariate Analysis with Optimal Scaling
- ASSET
- An R package for subset-based association analysis of heterogeneous traits and subtypes
- asuR
- Advanced statistics using R
- AtelieR
- A GTK GUI for teaching basic concepts in statistical inference, and doing elementary bayesian tests.
- atmosphere
- weather and climate analysis
- Atools
- Atools
- audited
- Automatic Tracing and Display of Changes to Row Count
- aurelhy
- Hydrometeorological interpolation
- austin
- A package for doing things with words
- autocorr
- Testing Autocorrelation through bootstrap and surrogate methods
- background
- This packages allow users to ``background'' computations.
- BADGER
- A package for identifying sample mixups in combined expression and genotyping studies.
- bamlss
- Bayesian Additive Models for Location Scale and Shape (and Beyond)
- BAPC
- Projection of cancer incidence and mortality data using Bayesian APC models fitted with INLA
- barcode
- Barcode distribution plots
- barebone
- Multivariate Methods in Ecology with R: Basic Algorithms
- base64
- Base 64 encoder/decoder
- basefun
- Infrastructure for Computing with Basis Functions
- batman
- Bayesian AuTomated Metabolite Analyser for NMR spectra
- baybi
- Bayesian Biclustering with Subject and Variable Importance
- bayesdnamix
- Procedure for evaluate marginal likelihood for quantitative STR DNA mixture bayesian models
- BayesFactor
- Computation of Bayes factors for common designs
- BayesFactors.gibi
- Compute Bayes factors using the GIBI interface
- BayesR
- Bayesian Regression in R
- BayesSingleSub
- Computation of Bayes factors for interrupted time-series designs
- BayesXdev
- R Package Distribution of the BayesX C++ Development Sources
- BB
- Solving and Optimizing Large-Scale Nonlinear Systems
- bbmle
- Tools for general maximum likelihood estimation
- BcDiag
- Diagnostics Plots for Bicluster Data
- BCE
- Bayesian composition estimator: estimating sample (taxonomic) composition from biomarker data
- bclust
- Bayesian Hierarchical Clustering Using Spike and Slab Models
- bdlp
- A Package for Transparent Artificial Data Generation
- BDR
- Big Data Ready
- bdsmatrix
- Routines for Block Diagonal Symmetric matrices
- bertin
- Bertin matrix display
- Bessel
- Bessel Functions Computations and Approximations
- betapart
- Partitioning Beta Diversity into Turnover and Nestedness Components
- betareg
- Beta Regression
- bfa
- Bayesian Factor Analysis
- bfast
- Breaks For Additive Season and Trend
- bfp
- Bayesian Fractional Polynomials
- BGLR
- Bayesian Generalized Linear Regression
- BGLRutils
- Utilities for Bayesian Generalized Linear Regression
- BH
- The Boost C++ Libraries
- bibtex
- bibtex parser
- biclust
- BiCluster Algorithms
- biclustRank
- Ranking of biclusters using another data source
- bigalgebra
- BLAS routines for native R matrices and big.matrix objects.
- biganalytics
- A library of utilities for big.matrix objects of package bigmemory.
- biglme
- Procedure for doing inference of one-way Linear Mixed Effects models.
- bigmemory
- Manage massive matrices with shared memory and memory-mapped files
- bigmemory.sri
- A shared resource interface for Bigmemory Project packages
- bigmlogit
- Estimation of models with limited dependent variables
- bigRR
- Generalized Ridge Regression (with special advantage for p >> n cases)
- BimodalIndex
- The Bimodality Index
- binom
- Binomial Confidence Intervals For Several Parameterizations
- binomTools
- Performing diagnostics on binomial regression models
- BioCalc
- Bioclim Variables Calculator
- BioCro
- Simulation of Biomass Crops
- BIOMOD
- Ensemble platform for species distribution modeling
- biomod2
- Ensemble Platform for Species Distribution Modeling
- biostatUZH
- Misc Tools of the Department of Biostatistics, EBPI, University of Zurich
- BiplotGUI
- Interactive Biplots in R
- bit
- A Class for Vectors of 1-Bit Booleans
- bit64
- A S3 Class for Vectors of 64bit Integers
- biVar
- Bias-Variance Analysis of the Misclassification Rate
- biwavelet
- Conduct univariate and bivariate wavelet analyses
- BLCOP
- Black-Litterman and copula-opinion pooling frameworks
- blmr
- Broken Line Model Regression
- blockDemac
- parallel DEMC with several parameter blocks
- blockmodeling
- An R package for generalized and classical blockmodeling of valued networks
- blockra
- Block Rearrangement Algorithm
- blockrand
- Randomization for block random clinical trials
- blotter
- Tools for Transaction-Oriented Trading Systems Development
- BLR
- Bayesian Linear Regression
- blupsurv
- Recurrent events with BLUPs
- bmem
- Mediation analysis with missing data using bootstrap
- BMRV
- Bayesian Models for Rare Variant Association Analysis
- boilerpipeR
- Interface to the boilerpipe Java library by Christian Kohlschutter (http://code.google.com/p/boilerpipe/)
- bomDataRipper
- BOM data getter
- BoostHeaders
- The Boost C++ Libraries
- bootBCa
- Function to find nonparametric BCa intervals
- bootfs
- Derive Robust Feature Sets for Two or Multiclass Classification Problems
- BOS
- Model-based clustering of multivariate ordinal data relying on a stochastic binary search algorithm
- bounds
- Bounds for causal and sufficient-cause interactions
- bpkde
- Back-Projected Kernel Density Estimation
- bpm
- Basic functions for panel data analysis
- bptwin
- Cumulative incidence models for twin data
- brew
- Templating Framework for Report Generation
- brglm
- Bias reduction in binomial-response generalized linear models.
- bride
- Brier score decomposition of probabilistic forecasts for binary events
- btergm
- Temporal Exponential Random Graph Models by Bootstrapped Pseudolikelihood
- btutils
- Utilities for Simple Back Testing of Trading Strategies
- BUGSExamples
- Collection of BUGS examples
- bvpSolve
- Solvers for Boundary Value Problems of Differential Equations
- bvsflex
- Integrative Bayesian variable selection with flexible priors
- c060
- Extended Inference for Lasso and Elastic-Net Regularized Cox and Generalized Linear Models
- c3net
- Infering large-scale gene networks with C3NET
- C50
- C5.0 Decision Trees and Rule-Based Models
- ca
- Simple, Multiple and Joint Correspondence Analysis
- CALIBERcodelists
- Generate ICD10, Read and OPCS codelists
- CALIBERdatamanage
- Data Management Tools for CALIBER Datasets
- CALIBERdrugdose
- Extract drug dose from unstructured dosage text
- CALIBERfma
- R interface to the Freetext Matching Algorithm
- CALIBERrfimpute
- Multiple imputation using MICE and Random Forest
- calibFit
- Statistical models and tools for assay calibration
- CAMAN
- Finite Mixture Models and Meta-Analysis Tools - Based on C.A.MAN
- CandidateBacon
- Provides a measure of the average connectedness among as set of candidate genes and a network-specific distribution of the connectedness of random gene pairs for an arbitrary network of pair wise interactions.
- candlesticks
- Candlestick Pattern Recognition
- CANS.works
- Import, manipulate and analyze data from the Massachusetts CANS tool
- car
- Companion to Applied Regression
- cardidates
- Identification of Cardinal Dates in Ecological Time Series
- caret
- Classification and Regression Training
- caretLaTeX
- LaTeX Classes for the caret Package
- caspr
- Cellular Automata for Spatial Pressure in R
- catlearn
- Formal Modeling for Psychology
- cbmisc
- Claudia's collection of miscellaneous functions
- cbmodels
- Collection of "combined" models: PCA-LDA, PLS-LDA, etc.
- cccp
- Cone Constrained Convex Problems
- ccgarch2
- Conditional Correlation GARCH Models
- cdb
- Reading and Writing Constant DataBases
- cdtRefficient
- cdtRefficient
- cdtRggplot2
- cdtRggplot2
- cdtRintroduction
- cdtRintroduction
- cdtRmodelling
- cdtRmodelling
- cdtRprogramming
- cdtRprogramming
- censReg
- Censored Regression (Tobit) Models
- CENTIPEDE
- CENTIPEDE learns a DNaseI footprint of a transcription factor and predicts its binding sites
- cffdrs
- Canadian Forest Fire Danger Rating System
- CFL
- Compensatory Fuzzy Logic
- cgenpp
- Parallel genomic evaluations
- cghseg
- Segmentation methods for array CGH analysis
- cgmisc
- Various functions useful in computational genetics, e.g. GWAS.
- CHAID
- CHi-squared Automated Interaction Detection
- charmData
- An example dataset for use with the charm package
- CHNOSZ
- Chemical Thermodynamics and Activity Diagrams
- chromatosimul
- What the package does (short line)
- cinf
- Basic tools for chemoinformatics
- circular
- Circular Statistics
- CITAN
- CITation ANalysis toolpack
- CItools
- Computation, comparison and sensitivity analysis of composite indicators of performance
- CLAG
- An unsupervised non hierarchical clustering algorithm handling biological data
- clamix
- Clustering modal multi valued symbolic data
- ClassComparison
- Classes and Methods for "Class Comparison" Problems on Microarrays
- ClassDiscovery
- Classes and Methods for "Class Discovery" with Microarrays or Proteomics
- classInt
- Choose Univariate Class Intervals
- ClassPrediction
- Classes and Methods for "Class Prediction" with Microarrays or Proteomics
- classSNitch
- Classifies RNA Structure Change in Chemical Mapping Data
- ClimMob
- Crowdsourcing climate-smart agriculture
- climstats
- R functions for working with station and gridded climate data.
- climtrends
- Statistical Methods for Climate Sciences
- clustDDist
- Clustering Discrete Distributions
- Clustericat
- This package performs clustering for categorical dataset.
- clusterpathRcpp
- Fast agglomerative convex clustering, original Rcpp implementation
- cmaes
- Covariance Matrix Adapting Evolutionary Strategy
- cMonkey
- cMonkey integrated biclustering algorithm
- cmprskWeb
- Multistage Competing Risks Analysis for Web data
- CMRCT
- Fit Capture-Mark-Recapture models in continuous time.
- cnagIO
- Methods for reading CNAG files
- cnf2freq
- same Chromosome N-loci F2 frequencies
- cnf2freqibdtracer
- same Chromosome N-loci F2 frequencies, with IBD tracing
- coalesceR
- A pedagogical tool to teach the basics of coalescent theory
- cobs
- COnstrained B-Splines (Sparse Matrix Based)
- cobs99
- Constrained B-splines -- outdated 1999 version
- cocorresp
- Co-correspondence analysis methods
- codebooks
- Management of Survey Data
- coefficientalpha
- Robust Cronbach's alpha with missing and non-normal data
- cofclust
- Consensus Optimization Fuzzy Clustering
- COGARCH
- Simulation and inferenc for COGARCH(1,1) processes
- coin
- Conditional Inference Procedures in a Permutation Test Framework
- colorscience
- Color Science Methods and Data
- colorspace
- Color Space Manipulation
- colourschemes
- Data-driven colour scheme mappers
- commandr
- Command pattern in R
- CommEcol
- Community Ecology Analyses
- CommonJavaJars
- Useful libraries for building a Java based GUI under R
- CoModes
- This package performs clustering for categorical dataset by using a conditional modes mixture model
- CompRandFld
- Composite-Likelihood Based Analysis of Random Fields
- conformal
- Conformal mapping from a polygon to a disk
- conicfit
- Algorithms for Fitting Circles, Ellipses and Conics Based on the Work by Prof. Nikolai Chernov
- constants
- Defines some physical constants and functions commonly used in optics, plasmonics.
- contrast
- A collection of contrast methods
- convoi
- Convex Optimization in R
- copula
- Multivariate Dependence with Copulas
- Corbi
- Collection of Rudimentary Bioinformatics Tools
- cordillera
- OPTICS Cordillera
- corHMM
- Analysis of binary character evolution
- corpora
- Statistics and Data Sets for Corpus Frequency Data
- CorrBin
- Nonparametrics with Clustered Binary and Multinomial Data
- CoSeg
- An R package for cosegregation analysis and simulating pedigrees
- coseq
- Co-Expression Analysis of Sequencing Data
- countreg
- Count Data Regression
- CoxFlexBoost
- Boosting Flexible Cox Models (with Time-Varying Effects)
- cRacker
- R-script suite for automated processing of proteomic peptide lists
- cremo
- cremo: Comparative REndering of Model Outputs
- CRF
- Conditional Random Fields
- crop
- Graphics Cropping Tool
- cropData
- Modelling crop trial data
- cropr
- simulate crop growth
- CrossVal
- Classes and methods for cross validation of "class prediction" with microarrays or proteomics
- CrossValidate
- Classes and Methods for Cross Validation of "Class Prediction" with Microarrays or Proteomics
- crules
- Classification Rules
- CSFA
- Connectivity Scores with Factor Analysis
- cshapes
- CShapes Dataset and Utilities
- csn
- Closed Skew-Normal Distribution
- csound
- Accessing Csound functionality through R
- csSAM
- csSAM - cell-specific Significance Analysis of Microarrays
- cthmm
- Latent Continuous Time Markov Chains
- ctm
- Conditional Transformation Models
- ctmcmove
- Modeling Animal Movement with Continuous-Time Discrete-Space Markov Chains
- ctmcMove
- Modeling Animal Movement with Continuous-Time Discrete-Space Markov Chains
- ctmDevel
- Conditional Transformation Models
- ctv
- CRAN Task Views
- Cubist
- Rule- and Instance-Based Regression Modeling
- CulturalAnalytics
- Functions for statistical analysis and plotting of image properties
- curve
- Dynamic Systems Estimation - Curvature Extensions
- cusp
- Cusp-Catastrophe Model Fitting Using Maximum Likelihood
- CVD
- Color Vision Deficiencies
- cvGWAS
- Genome-wide association analysis based on predictive ability
- cvm.test
- Discrete Cramer von Mises Goodness-of-Fit Tests
- cvrcalc
- Cardiovascular Risk Calculator
- daewr
- Design and Analysis of Experiments with R
- dagitty
- Graphical Analysis of Structural Causal Models
- dairy
- Functions and models related to dairy production
- DAMisc
- Dave Armstrong's Miscellaneous Functions
- DanteR
- Proteomics data analysis tool
- Dataset
- Handling survey data in R. (official release)
- data.table
- Extension of data.frame
- date
- Functions for handling dates
- DCchoice
- Analyzing Dichotomous Choice Contingent Valuation Data
- dcemri
- A Package for Medical Image Analysis
- dcemriS4
- A Package for Medical Image Analysis (S4 implementation)
- dcGOR
- Analysis of Ontologies and Protein Domain Annotations
- dChipIO
- Methods for reading dChip files
- dclone
- Data Cloning and MCMC Tools for Maximum Likelihood Methods
- DCluster
- Functions for the Detection of Spatial Clusters of Diseases
- DClusterm
- Model-based detection of disease clusters
- ddepn
- Dynamic Deterministic Effects Propagation Networks: Infer signalling networks for timecourse RPPA data.
- DDIwR
- DDI with R
- DeadCanMove
- Assess how spatial roadkill patterns change with temporal sampling scheme
- debias
- Functions implementing MLE,its bias reduction for small samples and related issues
- debug
- printf-style debugging
- decomp
- Various functions to quantify and decompose health inequalities
- DeconWK
- Deconvolution by Weighted Kernels
- decUpdate
- Update of matrix decompositions
- DeducerAlpha
- Tools for aggregating scale items
- DeducerANOVA
- Factorial ANOVA for Deducer
- DeducerPlugInScaling
- Reliability and factor analysis plugin
- DeducerPSY220
- PSY220 Deducer Plug-In
- DeducerReshape
- Converts data frames from wide to long and long to wide formats
- DeducerRichOutput
- Rich Output Display for Deducer
- DeducerSpatial
- Deducer for spatial data analysis
- DeducerText
- Deducer GUI for Text Data
- DeepCNV
- Exploiting Normal Contamination to Infer Copy Number from Deep Sequencing
- deepnlp
- Deep Learning Neural Network Models (RNN, CNN, etc) in NLP
- DEFFbinary
- Compute the design effect for correlated binary data
- delftfews
- delftfews R extensions
- demoniche
- demoniche - spatial population dynamics
- Dendrometry
- Decipher Barr & Stroud FP-15 from STX Files
- DengueParmEst
- Parameter estimates (and real-time prediction) of a single dengue outbreak
- DengueRT
- Parameter Estimates and Real-Time Prediction of a Single Dengue Outbreak
- DEoptimR
- Differential Evolution Optimization in Pure R
- depmix
- Dependent Mixture Models
- depmixS4
- Dependent Mixture Models - Hidden Markov Models of GLMs and Other Distributions in S4
- depthproc
- depthproc
- DepthProc
- Statistical Depth Functions for Multivariate Analysis
- desirability
- Desirabiliy Function Optimization and Ranking
- desire
- Desirability functions
- deSolve
- Solvers for Initial Value Problems of Differential Equations ('ODE', 'DAE', 'DDE')
- detect
- Analyzing Wildlife Data with Detection Error
- deTestSet
- Testset for differential equations
- DetSel
- A computer program to detect markers responding to selection
- dfdb
- Access Data Tables in a SQLite Data Base as Pseudo-Dataframes
- dfdb.RODBC
- Access Data Tables in an RODBC Data Base as Pseudo-Dataframes
- dfoptim
- Derivative-free Optimization
- dgof
- Discrete Goodness-of-Fit Tests
- DiagnosisMed
- Diagnostic test accuracy evaluation for health professionals.
- diagram
- Functions for Visualising Simple Graphs (Networks), Plotting Flow Diagrams
- dichromat
- Color Schemes for Dichromats
- DICOM
- Import medical imaging data using the DICOM Standard
- DierckxSpline
- R companion to "Curve and Surface Fitting with Splines"
- diffEq
- Functions from the book Solving Differential Equations in R
- digest
- Create cryptographic hash digests of R objects
- digitize
- digitize : a plot digitizer in R
- directlabels
- Direct labels for multicolor plots in lattice or ggplot2
- dirichlet
- Dirichlet and Generalized Dirichlet Distribution functions
- dirt
- soil science related functions
- diseasemapping
- Modelling Spatial Variation in Disease Risk for Areal Data
- diseasemappingDevel
- Functions to compliment diseasemapping
- dismo
- Species Distribution Modeling
- distr
- Object Oriented Implementation of Distributions
- distrDoc
- Documentation for 'distr' Family of R Packages
- distrEllipse
- S4 Classes for Elliptically Contoured Distributions
- distrEx
- Extensions of Package 'distr'
- DistributionUtils
- Distribution Utilities
- distrMod
- Object Oriented Implementation of Probability Models
- distrRmetrics
- Distribution Classes for Distributions from Rmetrics
- distrSim
- Simulation Classes Based on Package 'distr'
- distrTeach
- Extensions of Package 'distr' for Teaching Stochastics/Statistics in Secondary School
- distrTEst
- Estimation and Testing Classes Based on Package 'distr'
- disttree
- Trees and Forests for Distributional Regression
- diveMove
- Dive analysis and calibration
- dlm
- Bayesian and Likelihood Analysis of Dynamic Linear Models
- dlrm
- Dynamic Linear Regression Model
- dmt
- Dependency Modeling Toolkit
- dnamatch
- A procedure for large scale contamination search
- dnet
- Integrative Analysis of Omics Data in Terms of Network, Evolution and Ontology
- documair
- Automatic Documentation for R packages
- doMC
- Foreach Parallel Adaptor for 'parallel'
- doParallel
- Foreach Parallel Adaptor for the 'parallel' Package
- doRNG
- Generic Reproducible Parallel Backend for foreach Loops
- doSMP
- Foreach parallel adaptor for the revoIPC package
- doSNOW
- Foreach Parallel Adaptor for the 'snow' Package
- Dowd
- Functions Ported from 'MMR2' Toolbox Offered in Kevin Dowd's Book Measuring Market Risk
- downscale
- Downscaling Species Occupancy
- dpeaqms
- Differential Protein Expression Analysis using Quantitative Mass Spectrometry Data (dpeaqms)
- dplR
- Dendrochronology Program Library in R
- dpmixsim
- Dirichlet Process Mixture model simulation for clustering and image segmentation
- dr
- Methods for Dimension Reduction for Regression
- drawExpression
- Visualising R syntax through graphics
- dream
- DiffeRential Evolution Adaptive Metropolis
- drought
- Tools for Drought Modeling and Assessment
- dsample
- Discretization-Based Direct Random Sample Generation
- dse
- Dynamic Systems Estimation (Time Series Package)
- dse1
- DSE (unbundled transition package).
- dse2
- DSE (unbundled transition package).
- dsinr
- Functions and datasets for the book "Data Science in R"
- DSL
- Distributed Storage and List
- dtw
- Dynamic time warping algorithms
- dummy
- A dummy package to ask R-Forge to install packages that I need
- DWD
- DWD implementation based on A IPM SOCP solver
- DynTxRegime
- Methods for Estimating Dynamic Treatment Regimes
- e1071
- Misc Functions of the Department of Statistics, Probability Theory Group (Formerly: E1071), TU Wien
- earlywarnings
- Early Warning Signals Toolbox for Detecting Critical Transitions in Timeseries
- earthmovdist
- Wrapper to the Emd-L1 library by Haibin Ling and Kazunori Okada
- EasyABC
- Efficient Approximate Bayesian Computation Sampling Schemes
- easydb
- Generic S3 Classes for Simple Database Interfaces
- easyrodbcaccess
- Simple Database Interface for SQLite, MySQL and MS Access
- easyrodbcexcel
- Simple database interface for RODBC Excel.
- easyrodbcmysql
- Simple Database Interface for MySQL
- eat
- eat
- eatData
- eatData
- eatDesign
- eatDesign
- eatDev
- eatDev
- eatGet
- eatGet
- eatModel
- eatModel
- eatPrep
- Prepare Data for IRT Analyses
- eatRep
- eatRep
- eatRest
- eatRest
- eatTools
- eatTools
- eatTrend
- Estimate National Trends in International Large-Scale Assessments
- EBImage
- DUMMY DUMMY DUMMY
- ebimetagenomics
- EBI Metagenomics Portal
- EBS
- Exact Bayesian Segmentation
- Ecdat
- Data Sets for Econometrics
- Ecfun
- Functions for Ecdat
- ecolMod
- "A Practical Guide to Ecological Modelling - Using R as a Simulation Platform"
- ecomodtools
- Ecological Modelling Toolbox
- ecoPD
- Ecologically-informed phylodiversity metrics
- ecotoxicology
- Methods for Ecotoxicology
- ECPaysage
- A set of R resources to teach landscape ecology, landscape analysis and spatial statistics
- edd
- expression density diagnostics
- edpcr
- Performs Extended Digital PCR Analysis
- eefAnalytics
- Analytical Package for Analysing Education Trials
- eefMLM
- Analytical Package for Analysing Education Trials
- effects
- Effect Displays for Linear, Generalized Linear, and Other Models
- efflog
- The causal effects for a causal loglinear model
- eiwild
- Ecological Inference with individual and aggregate data
- electricity
- Electricity market models
- electronics
- Electronics
- elsa
- Entropy-based Local indicator of Spatial Association
- emissions
- What the package does (short line)
- EMLasso
- Fit (logistic) LASSO when there is missing data in the predictors
- emon
- Tools for Environmental and Ecological Survey Design
- EngrExpt
- Data sets from "Introductory Statistics for Engineering Experimentation"
- EnQuireR
- A package dedicated to questionnaires
- ensbiascoR
- Resampling bias correction for large initial condition ensembles
- Epi
- A Package for Statistical Analysis in Epidemiology
- epiG
- DNA methylation and SNP calling for bisulfite sequencing data
- epinetics
- EpiNetics
- epineticseq
- EpiNeticSeq
- EPISbigRR
- Generalized Ridge Regression for Analysis of Interaction Effects
- EpitopePrediction
- Predict Binding Between Peptides and MHC Molecules
- EricksenLeslie
- numerical solution of Ericsken-Leslie equations for 1D liquid crystal cells
- eRm
- Extended Rasch Modeling
- erpR
- Event-related potentials (ERP) analysis, graphics and utility functions
- ESM
- Ecological Specificity Measures
- estimate
- Estimate of Stromal and Immune Cells in Malignant Tumor Tissues from Expression Data
- etanalysis
- Analysis of Eye-tracker data
- euroformix
- Package for intepretation of quantitative DNA mixtures
- euroMix
- Calculations for DNA mixtures
- euroMixR
- Calculations for DNA mixtures, only R code
- events
- Store and manipulate event data
- EventTree
- Event Trees for Hazard and Risk Analysis
- evir
- Extreme Values in R
- evtree
- Evolutionary Learning of Globally Optimal Trees
- ewc
- Edge-Weighted Closeness
- ExactSampling
- ExactSampling: risk evaluation using exact resampling methods for the k Nearest Neighbor algorithm.
- exams
- Automatic Generation of Exams in R
- exec
- Execute scripts in exec directory of packages
- ExLiebeRes
- Exact Liebermann/Reshnikov and Bruhn-Suhr/Krumbholz plans
- ExpectedReturns
- Computation of implied expected returns
- expectile
- Modelling of expectiles
- extendedForest
- Breiman and Cutler's random forests for classification and regression
- ExtremalDep
- Extremal Dependence Modeling
- EZ2
- Modeling Human Response Times and Accuracy using the EZ/EZ2 Diffusion Model
- fACD
- Autoregressive Conditional Duration Models in R
- factorAnalytics
- Factor Analytics
- FactorAnalytics
- Functions for performing factor analysis on financial time series
- factorplot
- factorplot
- fakeplace
- Generate fake geographies
- fArma
- Rmetrics - Modelling ARMA Time Series Processes
- fAsianOptions
- Rmetrics - EBM and Asian Option Valuation
- fAssets
- Rmetrics - Analysing and Modelling Financial Assets
- fassoc
- VARIANCE COMPONENT BASED MULTI-MARKER ASSOCIATION TEST USING FAMILY AND UNRELATED DATA
- fastR
- Data sets and utilities for Foundations and Applications of Statistics by R Pruim
- FaultTree
- Fault Trees for Risk and Reliability Analysis
- fBasics
- Rmetrics - Markets and Basic Statistics
- fBonds
- Rmetrics - Pricing and Evaluating Bonds
- fCertificates
- fCertificates - Basics of Certificates and Structured Products Valuation
- fCopulae
- Rmetrics - Bivariate Dependence Structures with Copulae
- FD
- Measuring functional diversity (FD) from multiple traits, and other tools for functional ecology
- fda
- Functional Data Analysis
- FDboost
- Boosting Functional Regression Models
- fdnonpar
- Methods for Multivariate or Functional Data
- fEcofin
- Economic and Financial Data Sets
- fExoticOptions
- Rmetrics - Pricing and Evaluating Exotic Option
- fExpressCertificates
- fExpressCertificates - Structured Products Valuation for ExpressCertificates/Autocallables
- fExtremes
- Rmetrics - Modelling Extreme Events in Finance
- FFD
- Freedom from Disease
- fftrees
- Fast- and Frugal Tree Analysis
- fGarch
- Rmetrics - Modelling Autoregressive Conditional Heteroskedasticity
- FGM
- Floating Grid Method
- fgpt
- Floating Grid Permutation Technique
- fImport
- Rmetrics - Importing Economic and Financial Data
- FinancialInstrument
- Financial Instrument Model Infrastructure for R
- fincov
- Methods for estimating covariance matrices
- fingerprint
- Functions to operate on binary fingerprint data
- FinTS
- Companion to Tsay (2005) Analysis of Financial Time Series
- FIRMAGene
- FIRMAGene - differential splicing for Affymetrix Gene 1.0 ST
- fisheyeR
- Fisheye and Hyperbolic-space-alike Interactive Visualization Tools in R
- fishkirkko2015
- Dataset of Measurements of Fish Species at Kirkkojarvi Lake, Finland
- fitdistrplus
- Help to Fit of a Parametric Distribution to Non-Censored or Censored Data
- fitmixst4
- Fitting mixture of skew t distribution
- fit.models
- fit.models
- fitob
- General solvers for the general Black-Scholes (Fokker Planck) partial differential equation (PDE) in a multi-dimensional setting with main application in finance (option pricing).
- FKF
- Fast Kalman Filter
- FLAssess
- Generic classes and methods for stock assessment models
- FLBEIA
- Bio-Economic Impact Assessment of Management strategies using FLR
- FLCore
- Core package of FLR, fisheries modelling in R.
- FLEDA
- Exploratory Data Analysis for FLR
- FLExamples
- Example datasets for FLR manuals and tutorials
- FlexBayes
- Flexible Bayesian Inference
- flexsurv
- Flexible parametric survival models
- flightcallr
- Classify Night Flight Calls Based on Acoustic Measurements
- flock
- Process synchronization using file locks
- FLXSA
- eXtended Survivor Analysis for FLR
- fMarkovSwitching
- R Package for Estimation, Simulation and Forecasting of a Univariate Markov Switching Model
- FME
- A Flexible Modelling Environment for Inverse Modelling, Sensitivity, Identifiability and Monte Carlo Analysis
- fMultivar
- Rmetrics - Analysing and Modeling Multivariate Financial Return Distributions
- fNonlinear
- Rmetrics - Nonlinear and Chaotic Time Series Modelling
- foodweb
- Generating food webs
- fOptions
- Rmetrics - Pricing and Evaluating Basic Options
- ForAI
- Forecasting with Artificial Intelligence
- foreach
- Provides Foreach Looping Construct for R
- ForensicDocument
- Quantification and evaluation tools for forensic document examiners
- forensim
- Statistical tools for the interpretation of forensic DNA mixtures
- forestFloor
- Visualizes Random Forests with Feature Contributions
- forestFloorStable
- (Legacy version 1.5)Visualizes Random Forests with Feature Contributions
- Formula
- Extended Model Formulas
- formulr
- Miscelaneous tools to handle formulas.
- fortunes
- R Fortunes
- fpop
- Segmentation using Optimal Partitioning and Function Pruning
- fPortfolio
- Rmetrics - Portfolio Selection and Optimization
- fPortfolioBacktest
- Rmetrics - Portfolio Backtesting
- fractal
- Fractal Time Series Modeling and Analysis
- FRAPO
- Financial Risk Modelling and Portfolio Optimisation with R
- freesortphi
- Cramer's Phi Analysis of Freesort Data
- fRegression
- Rmetrics - Regression Based Decision and Prediction
- freqdom
- Frequency Domain Analysis for Multivariate Time Series
- frontier
- Stochastic Frontier Analysis
- FRSstats
- FRS Statistics Group R Library
- FSelector
- Selecting attributes
- FSim
- A package to search functionally similar genes
- fTrading
- Rmetrics - Trading and Rebalancing Financial Instruments
- ftree
- Fault Trees and Event Trees for Risk and Reliability Analysis
- fullexampledata
- Activated Region Fitting, fMRI data analysis (3D), additional dataset.
- fun
- Use R for Fun
- funcheck
- OBSOLETE: Run tests, where possible, on named optimization problem file.
- Funclustering
- A package for functional data clustering.
- funcreg
- Functional Regression Estimation
- functional
- Curry, Compose, and other higher-order functions
- fUnitRoots
- Rmetrics - Modelling Trends and Unit Roots
- funphylocom
- Functional traits, phylogenies, communities, simulations
- fuse
- Framework for Understanding Structural Errors (FUSE)
- FuseBox
- Combining Classifiers
- fusedanova
- Fused-ANOVA
- fusedanova2
- Fused-ANOVA
- FUtils
- Felix's favorite functions
- FuzzyNumbers
- Tools to deal with fuzzy numbers in R
- fuzzySim
- Fuzzy similarity in species distributions
- fwi.fbp
- Fire Weather Index System and Fire Behaviour Prediction System Calculations
- fxregime
- Exchange Rate Regime Analysis
- G2Sd
- Grain-size Statistics and Description of Sediment
- g4n
- graph for networks
- gada
- Genome Alteration Detection Algorithm (GADA)
- gamboostLSS
- Boosting Methods for GAMLSS
- gamesNws
- Playing games using a NWS Server
- gamlss.cens
- Fitting an interval response variable using gamlss.family distributions
- gamlss.data
- GAMLSS Data.
- gamlss.demo
- Demos for GAMLSS
- gamlss.dist
- Distributions to be used for GAMLSS modelling.
- gamlss.mx
- A GAMLSS add on package for fitting mixture distributions
- gamlss.nl
- Fitting non linear parametric GAMLSS models
- gamlss.tr
- Generating and fitting truncated (gamlss.family) distributions
- gammadnamix
- Package for intepretation of quantitative DNA mixtures
- GARPFRM
- Global Association of Risk Professionals: Financial Risk Manager
- gazepath
- Parse Eye-Tracking Data into Fixations
- gcensus
- Census populations and polygons
- gcmdiag
- Growth curve modeling diagnostics
- gdalUtils
- Wrappers for the Geospatial Data Abstraction Library (GDAL) Utilities
- gdata
- Various R Programming Tools for Data Manipulation
- gdistance
- Distances and Routes on Geographical Grids
- gdm
- Create Generalised Dissimilarity Models
- Gdm01
- Create Generalised Dissimilarity Models
- GDS
- Genome-Wide Differential Splicing Detection
- gdsfmt
- R Interface to CoreArray Genomic Data Structure (GDS) files
- geeni
- gee in bounded memory, data from disk etc.
- GenABEL.data
- Data Used by the GenABEL Examples and Test Functions
- GenAlgo
- Classes and Methods to Use Genetic Algorithms for Feature Selection
- geneNetBP
- Belief Propagation in Genotype-Phenotype Networks
- GeneralizedHyperbolic
- The Generalized Hyperbolic Distribution
- genoPlotR
- Plot Publication-Grade Gene and Genome Maps
- genutils
- IRRI Geography Lab - General Utilities
- geo
- Draw and Annotate Maps, Especially Charts of the North Atlantic
- GeoConst
- Datasets and helper functions for commonly required values in geochemistry.
- geoCount
- Analysis and Modeling for Geostatistical Count Data
- geoextras
- Extras for the 'geo' package
- geometry
- Mesh Generation and Surface Tesselation
- geonames
- Interface to www.geonames.org web service
- geoRExtended
- An extension of the geoR package.
- GeoRiskR
- Data and functions for Geotechnical Risk Assessment
- georob
- Robust Geostatistical Analysis of Spatial Data
- geospt
- Geostatistical Analysis and Design of Optimal Spatial Sampling Networks
- geostatsp
- Geostatistical Modelling with Likelihood and Bayes
- geovec
- Manipulation of geographic vector (points, lines, polygons) data
- getMODIS
- Utility package for creating or updating a local user-defined subsets of the global MODIS grid data online archive. Pre-processing functionalities for MODIS grid data using MODIS Reporjection Tool (MRT)
- getopt
- C-like getopt behavior.
- ggene
- Semivariogram and Exploratory Spatial Analysis of Genetic Data
- ggplotFL
- Using ggplot2 in FLR
- ghyp
- A package on the generalized hyperbolic distribution and its special cases
- Gibi
- What the package does (short line)
- Gifi
- Gifi Methods for Categorical Multivariate Analysis
- glba
- General Linear Ballistic Accumulator Models
- gldist
- An Asymmetry-Steepness Parameterization of the Generalized Lambda Distribution.
- glmBfp
- Bayesian Fractional Polynomials for GLMs
- glmertree
- Generalized Linear Mixed Model Trees
- glmmADMB
- Generalized Linear Mixed Models using 'AD Model Builder'
- glmmBUGS
- Generalised Linear Mixed Models with BUGS and JAGS
- glmmixedlasso
- Generalized Linear Mixed Models with Lasso
- glmx
- Generalized Linear Models Extended
- globalboosttest
- Testing the additional predictive value of high-dimensional data
- glogis
- Fitting and Testing Generalized Logistic Distributions
- GLoMo
- Naive General Location Model
- glucpack
- glucpack
- gMCP
- Graph Based Multiple Comparison Procedures
- gmkin
- Graphical User Interface for Fitting Kinetic Models to Chemical Degradation Data
- gmm
- Generalized Method of Moments and Generalized Empirical Likelihood
- gmpm
- Generalized Multilevel Permutation Models
- gnmf
- Generalized Non-Negative Matrix Factorization Based on Renyi Divergence
- gof
- Model-diagnostics based on cumulative residuals
- gogarch
- Generalized Orthogonal GARCH (GO-GARCH) models
- gpairs
- gpairs: The Generalized Pairs Plot
- GPArotation
- GPA Factor Rotation
- gplots
- Various R Programming Tools for Plotting Data
- Gqr
- Determine knots and weights for Gaussian quadrature rules
- gr2
- Graphical R$^2$
- gradientForest
- Random Forest functions for the Census of Marine Life synthesis project.
- grainscape
- Grains of connectivity and minimum planar graph modelling of landscape connectivity (Windows only)
- graphicsQC
- Quality Control for Graphics in R
- gRaviopt
- What the package does (short line)
- gravy
- Gradient Analysis of Vegetation
- gRbase
- A package for graphical modelling in R
- gRc
- Inference in Graphical Gaussian Models with Edge and Vertex Symmetries
- gRchain
- Fitting Chain Graph Models
- greenbrown
- greenbrown - land surface phenology and trend analysis
- gregmisc
- Greg's Miscellaneous Functions
- Grho
- Grho parameters for asymptotic regression
- gridDebug
- Debugging 'grid' Graphics
- gridExtra
- functions in Grid graphics
- gridgame
- A game framework for R
- gridGraphviz
- Drawing Graphs with 'grid'
- gridSVG
- Export 'grid' Graphics as SVG
- grImport
- Importing Vector Graphics
- grndata
- Synthetic Expression Data for Gene Regulatory Network Inference
- GRTS
- Spatially balanced sampling based on GRTS
- gsDesign
- Group Sequential Design
- GSEArot
- GSEA rotation
- GSIF
- Global Soil Information Facilities
- gslcca
- Generalized Semi-Linear Canonical Correlation Analysis
- gsmoothr
- Smoothing tools
- gsod
- obtain daily weather data
- gstat
- Spatial and Spatio-Temporal Geostatistical Modelling, Prediction and Simulation
- gsymbols
- Grid-based symbols
- Guerry
- Maps, data and methods related to Guerry (1833) "Moral Statistics of France"
- GUTS
- Fast Calculation of the Likelihood of a Stochastic Survival Model
- GVAR
- Vector Error Correction Model (VECM), VECM with exogenous I(1) variables, Global VAR (GVAR)
- GWAtoolbox
- GWAS Quality Control
- gWidgets
- gWidgets API for building toolkit-independent, interactive GUIs
- gWidgetsManipulate
- port of RStudio's manipulate package using gWidgets
- gWidgetsrJava
- Toolkit implementation of gWidgets for rJava
- gWidgetstcltk
- Toolkit implementation of gWidgets for tcltk package
- gWidgetsWWW
- Toolkit implementation of the gWidgets API for use with web pages
- gWidgetsWWW2
- Toolkit implementation of the gWidgets API for use with web pages
- HaarSeg
- HaarSeg
- HadoopStreaming
- Utilities for using R scripts in Hadoop streaming
- hafroAssmt
- Hafro Assessment Toolbox
- HaploSurvival
- Modelling of haplo-effects for survival data, including competing risks. Effect of haplomatch for BMT studies.
- hawkes
- Hawkes process simulation and calibration toolkit
- Hawkes
- Hawkes
- hbiclust
- Hierarchical Biclustering
- HCgglasso
- Group-Lasso with Hierarchical Clustering
- hdi
- High-Dimensional Inference
- hdlm
- Fitting High Dimensional Linear Models
- hdm
- High-Dimensional Metrics
- HDPenReg
- High-Dimensional Penalized Regression
- HDR
- Processing of hyperspectral reflectance data
- helloJavaWorld
- Hello Java World
- hepi
- Functions for estimating hedonic elementary price indices
- heplots
- Visualizing Hypothesis Tests in Multivariate Linear Models
- herblabel
- Making Labels for Herbarium Specimens in RTF and More
- hgam
- High-dimensional Additive Modelling
- hglm
- Hierarchical Generalized Linear Models
- hglm.data
- Data for The hglm Package
- HIBAG
- HIBAG -- HLA Genotype Imputation with Attribute Bagging
- highfrequency
- Tools for Highfrequency Data Analysis
- highlight
- Syntax highlighter
- highriskzone
- Determining and Evaluating High-Risk Zones
- hisemi
- Hierarchical Semiparametric Regression of Test Statistics
- HistData
- Data Sets from the History of Statistics and Data Visualization
- HistogramTools
- Utility Functions for R Histograms
- HITXML
- Planning tools for ion beam therapy
- hive
- Hadoop InteractiVE
- h.likelihood
- Statistical Modeling and Inference via Hierarchical Likelihood
- hmmr
- Data and examples package accompanying the book 'HMMs with R'
- HMSC
- Hierarchical modelling of species community
- Holidays
- Holiday and Half-Day Data, for Use with the 'TimeWarp' Package
- hpcwld
- High Performance Cluster Models Based on Kiefer-Wolfowitz Recursion
- HTDA
- HTDA (High Throughput Data Analysis)
- htmltools
- R Tools for Producing HTML (Base64 Coding and R Interface to the tth/ttm TeX to HTML Translator)
- HTSCluster
- Clustering High-Throughput Transcriptome Sequencing (HTS) Data
- HTSDiff
- Differential Analysis of RNA-Seq Data with Poisson Mixture Models
- hubbell
- Functions for Hubbell's Grand Unified Theory
- hwriter5
- hwriter5: Writing HTML5 from R
- HybridMC
- Implementation of the Hybrid Monte Carlo and Multipoint Hybrid Monte Carlo sampling techniques
- hydroEFS
- Hydrological Event Finding and Summarising (hydroEFS).
- hydroMet
- Meteorological Data for Hydrological Modeling
- HyperbolicDist
- The hyperbolic distribution
- hypergsplines
- Bayesian model selection with penalised splines and hyper-g prior
- hyperSpec
- Work with Hyperspectral Data, i.e. Spectra + Meta Information (Spatial, Time, Concentration, ...)
- hyperSpecGUI
- Graphical interface for hyperSpec package, includes interactive plots
- IBData
- IB Real-time Data package
- IBDhaploRtools
- Functions for the Analysis of IBD Haplo Output.
- IBDlabels
- Convert between different IBD-state labelling schemes
- IBDLabels
- Convert Between Different IBD-State Labelling Schemes.
- ibmpm
- Individual-based metapopulation model
- ica4fts
- ica4fts package
- icav
- IC-ac
- ICC
- Functions facilitating the estimation of the Intraclass Correlation Coefficient
- icpsrmsda
- Optimal Linearizing Transformations for Multivariate Data
- idbg
- R debugger
- ifctools
- Italian fiscal code miscellaneous utilities
- ifrogs
- Finance routines developed by the IGIDR Finance Research Group.
- ifs
- Iterated Function Systems
- ifultools
- Insightful Research Tools
- IGIR
- Integrative network Graphic Engine Interface for R
- IHA
- This package implements The Nature Conservancy's Indicators of Hydrologic Alteration software in R.
- imad
- Iteratively Re-weighted Multivariate Alteration Detection (iMAD)
- imagemap
- Create html imagemaps
- imguR
- Share plots using the imgur.com image hosting service
- immunoassay
- Functions for working with immunoassay data.
- INBOtheme
- Themes for ggplot2
- infeR
- A pedagogical tool to teach the basics of inference in population genetics
- inference
- Functions to extract inferential values of a fitted model object
- INLABMA
- Bayesian Model Averaging with INLA
- inlaDevel
- Development files for INLA
- inlinedocs
- Convert inline comments to documentation
- inspectr
- Storing, manipulating and analysis spectroscopy and associated data in R.
- int64
- 64 bit integer types
- IntClust
- Integrated Data Analysis via Clustering
- integIRTy
- Integrating Multiple Modalities of High Throughput Assays Using Item Response Theory
- IntegratedJM
- Joint Modelling of the Gene-Expression and Bioassay Data, Taking Care of the Effect Due to a Fingerprint Feature
- intergraph
- Coercion routines for network data objects in R
- intervals
- Tools for working with points and intervals
- intReg
- Interval Regression
- IntroCompFinR
- Introduction to Computational Finance in R
- inum
- Interval and Enum-type Representation of Vectors
- ipeds
- Integrated Postsecondary Education Data System (IPEDS) Access
- ipeglim
- Imprecise Inferential Framework on Statistical Reasoning
- IPMpack
- Builds and analyses Integral Projection Models (IPMs).
- ipred
- Improved Predictors
- IPSUR
- Introduction to Probability and Statistics Using R
- irt
- irt. Spady's Item Response Model
- IsoGene
- Order-Restricted Inference for Microarray Experiments
- IsoGeneGUI
- A graphical user interface to conduct a dose-response analysis of microarray data
- IsolationForest
- Isolation Forest
- isotone
- Active Set and Generalized PAVA for Isotone Optimization
- issb
- R code associated with the book chapter "Simulation of stochastic kinetic models"
- isuR
- Introducing statistics using R
- iterators
- Provides Iterator Construct for R
- itertools
- Iterator Tools
- ithir
- Functions and Algorithms Specific to Pedometrics
- jacobi
- Jacobi Rotations
- JBTools
- Misc Small Tools and Helper Functions for Other Code of J. Buttlar
- JDEoptim
- j-Differential Evolution Optimization
- jjplot
- The jjplot plotting library for making beautiful plots fast and simple.
- jobqueue
- Generic Asynchronous Job Queue
- jointseg
- Joint segmentation of multivariate (copy number) signals
- jss
- Journal of Statistical Software Utilities
- khb
- KHB: Comparing nonlinear regression models
- kimisc
- Kirill's miscellaneous functions
- kinfit
- Routines for Fitting Kinetic Models to Chemical Degradation Data
- klaR
- Classification and visualization
- klausuR
- Multiple Choice Test Evaluation
- kmeansstep
- stepwise k-means cluster model selection
- Kmer
- Computes a matrix of K-mer counts.
- kmndirs
- k-Mean-Directions Algorithm
- knapsack
- Knapsack Routines
- KnockKnockJokes
- Knock-Knock Jokes
- ks.test
- Proposed Revision to stats::ks.test()
- labeling
- Axis Labeling
- labeltodendro
- Convert labels or tables to a dendrogram
- labstatR
- Libreria Del Laboratorio Di Statistica Con R
- Lahman
- Sean Lahman's Baseball Database
- lassogrp
- Lasso Regression including group lasso and adaptive lasso
- lattice
- Trellis Graphics for R
- latticeExtra
- Extra Graphical Utilities Based on Lattice
- lava
- Latent Variable Models
- lava.mixture
- Mixtures of Linear Latent Variable Models
- lava.tobit
- LVM with censored and binary outcomes
- LazyMLVA
- LazyMLVA
- lbiassurv
- Length-biased correction to survival curve estimation.
- lcmix
- Layered and chained mixture models
- LDExplorer
- Efficient Whole-Genome LD Based Haplotpe Block Recognition
- LDOD
- Finding Locally D-optimal optimal designs for some nonlinear and generalized linear models.
- LeerFotos
- Extrae la informacion de los metadatos de imagenes .jpg
- lethal
- Compute lethal doses (LD) with confidence intervals
- lfstat
- Calculation of Low Flow Statistics for Daily Stream Flow Data
- libamtrack
- Computational Routines for Proton and Ion Radiotherapy
- libcoin
- Linear Test Statistics for Permutation Inference
- LIM
- Linear Inverse Model examples and solution methods
- limSolve
- Solving Linear Inverse Models
- linLIR
- linear Likelihood-based Imprecise Regression
- linprog
- Linear Programming / Optimization
- lisp
- List-processing à la SRFI-1
- lm.br
- Linear Model with Breakpoint
- lmeSplines
- Add smoothing spline modelling capability to nlme.
- lmodel2
- Model II Regression
- lmsqreg
- LMS (Cole-Green Stat in Med 1992 quantile regression)
- lmSubsets
- Exact linear subset regression
- lnar
- Inference for stochastic kinetic genetic networks.
- LncDM
- The Different Methylation Sites, Elements and Regions of lncRNA
- loa
- Lattice Options and Add-Ins
- localEM
- Nonparametric Modelling of Spatial Risk for Areal Disease Data
- locClass
- Collection of Local Classification Methods
- locClassData
- Collection of Artificial Classification Problems
- Lock5Data
- Datasets for "Statistics: UnLocking the Power of Data"
- log10
- Decimal log plotting in two and three dimensions
- logging
- R logging package
- logistic4p
- Logistic Regression with Misclassification in Dependent Variables
- logisticDx
- Diagnostic tests for logistic regression models
- LogisticDx
- Diagnostic Tests for Models with a Binomial Response
- logitnorm
- Functions for the logitnormal distribution.
- loglognorm
- Double log normal distribution functions
- logopt
- Log optimal (universal) portfolios
- lokern
- Kernel Regression Smoothing with Local or Global Plug-in Bandwidth
- loret
- Logistic Regression Trees for Multinomial and Ordinal Responses
- lpridge
- Local Polynomial (Ridge) Regression
- lpSolveAPI
- R Interface to 'lp_solve' Version 5.5.2.0
- lqmm
- Linear Quantile Mixed Models
- lshorth
- The Length of the Shorth
- lsmeans
- Calculates the lsmeans and their variances for lm, gls,lme,mer,lmer and glmer models
- LSPM
- The Leverage Space Portfolio Modeler
- luck
- Generalized iLUCK models
- mada
- Meta-Analysis of Diagnostic Accuracy
- MADAM
- This package provides some basic methods for meta-analysis
- MAMI
- Model Averaging and Model Selection after Multiple Imputation
- mapmisc
- Utilities for Producing Maps
- mapoland
- Maps of Poland for data visualization and graphics
- maptools
- Tools for Reading and Handling Spatial Objects
- march
- Markov Chains
- marelac
- Tools for Aquatic Sciences
- marelacTeaching
- Datasets and tutorials for use in aquatic sciences
- mas1343
- MAS1343: Introduction to statistical computing
- mas2316
- MAS2316: Introduction to regression and modelling
- mas3321
- Bayes normal linear model and basic MCMC
- MassAtChance
- Implementation of the Mass at Chance models for subliminal priming accuracy data
- mastermix
- Procedure for deconvolving, weight-evidence and database search using STR DNA mixtures
- MatchImage
- likelihood-based image id code
- matchingMarkets
- Analysis of Stable Matchings
- maticce
- Mapping Transitions in Continuous Character Evolution
- Matrix
- Sparse and Dense Matrix Classes and Methods
- MatrixModels
- Modelling With Sparse and Dense Matrices
- matrixStats
- Methods that apply to rows and columns of a matrix
- maxLik
- Maximum Likelihood Estimation and Related Tools
- mc2d
- Tools for Two-Dimensional Monte-Carlo Simulations
- MCIBD
- Monte Carlo Identity-By-Descent Matrix Estimation
- mclogit
- Mixed Conditional Logit Models
- mco
- Multi criteria optimization algorithms and related functions
- mcplR
- Multiple Cue Probability Learning in R
- mcp.project
- Applies different False Discovery Rate controlling procedures
- mcsSubset
- MCS: Variable Subset Selection in Linear Regression
- MDP
- Markov Decision Processes (MDPs) in R
- MDSGUI
- A GUI for interactive MDS in R
- MeDiChI
- MeDiChI ChIP-chip deconvolution library
- MEET
- MEET: Motif Elements Estimation Toolkit
- mefa
- Multivariate Data Handling in Ecology and Biogeography
- mefa4
- Multivariate Data Handling with S4 Classes and Sparse Matrices
- MELON
- Methylation Enriched LOci Normalization (MELON) for genome-wide DNA methylation experiments
- memgene
- Spatial pattern detection in genetic distance data
- memisc
- Tools for Management of Survey Data and the Presentation of Analysis Results
- MEMSS
- Data sets from Mixed-effects Models in S
- messageQueue
- Allow R to communicate with message queues
- meta4diag
- Meta-Analysis for Diagnostic Test Studies
- MetABEL
- Meta-analysis of genome-wide SNP association results
- metapop
- Metapopulations and Incidence Functions
- metaRNASeq
- Meta-analysis of RNA-seq data
- metatest
- Fit and test metaregression models
- meteo
- Spatio-Temporal Analysis and Mapping of Meteorological Observations
- MethComp
- Analysis of Method Comparison studies
- metlab
- The Metrics Laboratory
- metRology
- Support for Metrological Applications
- metrumrg
- Pharmacometric Tools for Data Preparation, Modeling, Simulation, and Reporting
- mets
- Analysis of Multivariate Event Times
- MFTSR
- Modelling Financial Time Series with R
- mGSZ
- Gene set analysis based on GSZ-scoring function and asymptotic p-value
- MHTrajectoryR
- Bayesian Model Selection in Logistic Regression for the Detection of Adverse Drug Reactions
- mhurdle
- Multiple Hurdle Tobit Models
- mi
- Missing Data Imputation and Model Checking
- micEcon
- Microeconomic Analysis and Modelling
- micEconAids
- Demand Analysis with the Almost Ideal Demand System (AIDS)
- micEconCES
- Analysis with the Constant Elasticity of Substitution (CES) function
- micEconDist
- Microeconomic Production Analysis with Distance Functions
- micEconNP
- Microeconomic Analysis with Non-Parametric Methods
- micEconSNQP
- Symmetric Normalized Quadratic Profit Function
- mif2
- MIF2 algorithm development package
- migui
- Graphical User Interface of the mi Package
- minqa
- Derivative-free optimization algorithms by quadratic approximation
- miRtest
- Combined miRNA- and mRNA-Testing
- missMDA
- Handling missing values with/in multivariate data analysis (principal component methods)
- mitools
- Tools for multiple imputation of missing data
- MixAll
- Clustering using Mixture Models
- MixCluster
- MixCluster performs the clustering of mixed-type data sets (data sets with different natures of variables) with missing values.
- MixedTS
- Mixed Tempered Stable Distribution
- mixexp
- Design and Analysis of Mixture Experiments
- MixGHD
- Model Based Clustering, Classification and Discriminant Analysis Using the Mixture of Generalized Hyperbolic Distributions
- mixlm
- Mixed model ANOVA for lm and lmer
- mixPHM
- Mixtures of proportional hazard models.
- mixstock
- functions for mixed stock analysis
- MixtureDistribution
- Mixture Distribution
- mixvarselect
- Mixture of expert modelling with variable selection using penalization
- mkin
- Kinetic Evaluation of Chemical Degradation Data
- mlearning
- Machine learning algorithms with unified interface and confusion matrices
- mlfm
- Semiparametric multilevel frailty models, estimated via EMPL method
- MLGL
- Multi-Layer Goup-Lasso
- mlmRev
- Examples from Multilevel Modelling Software Review
- mlogit
- multinomial logit model
- mlt
- Most Likely Transformations
- mmap
- Map Pages of Memory
- MmgraphR
- Graphing for Markov Models and Hidden Markov Models
- mmSAR
- mmSAR is an R package for the modelling of the Species-Area Relationship (SAR).
- mnbem
- Matrix Normal Block EM
- Modeler
- Classes and Methods for Training and Using Binary Prediction Models
- modelfree
- Model-free estimation of a psychometric function
- ModelGood
- Validation of risk prediction models
- modelObj
- A Model Object Framework for Regression Analysis
- modEvA
- Model Evaluation and Analysis
- modi
- Multivariate outlier detection and imputation for incomplete survey data
- MODIS
- MODIS Acquisition and Processing
- modiscloud
- R tools for processing Level 2 Cloud Mask products from MODIS
- modisws
- Interface to the web processing service for MODIS data
- mombf
- Moment and Inverse Moment Bayes Factors
- MonetDB.R
- Connect MonetDB to R
- mosaicManip
- Project MOSAIC (mosaic-web.org) manipulate examples.
- MotilityLab
- Quantitative Analysis of Motion
- motmot
- Models of Trait Macroevolution on Trees
- move
- Visualizing and Analyzing Animal Track Data
- MPAgenomics
- Multi-Patient Analysis of Genomic Markers
- MPAlars
- lars algorithm
- mpc
- MPC - Multiple Precision Complex Library
- mpcbs
- Multi-sample and Multiplatform CNV.
- MPDiR
- Data sets and scripts for Modeling Psychophysical Data in R.
- mpia
- Meaningful Purposive Interaction Analysis
- mpifarm
- Farm out a sequence of jobs to a cluster of slaves using MPI.
- MplusAutomation
- Automating Mplus Model Estimation and Interpretation
- mpm
- Multivariate Projection Methods
- mpmi
- Mixed-pair mutual information estimators
- mpmm
- Marginal Product Mixture Model for Relational Event Data
- MPTinR
- Analyze Multinomial Processing Tree Models
- MPTinR2
- Analyze Multinomial Processing Tree Models
- mqext
- M-quantile extension of the mixed linear model
- mqqc
- Quality control of LCMS derived proteomic data
- mrpdata
- Data for Multilevel Regression and Poststratification
- MRPP
- Multiresponse permutation procedure and its variable importance and variable selection methods.
- MrPzurich2013
- MrP functions for MA class Zurich 2013
- msap
- Statistical analysis for Methylation-sensitive Amplification Polymorphism data
- MSDI
- Multivariate Standardized Drought Index (MSDI)
- msim
- This package implements the method of simulated moments for the GLMM logit mixed model as described in Jiang's (1998) article, Consistent Estimators in Generalized Linear Mixed Models.
- msimul
- Utilities for Simulation in Monte Carlo Experiments
- mskf
- Markov Switching Kalman Filter
- msm
- Multi-State Markov and Hidden Markov Models in Continuous Time
- MSToolkit
- The MSToolkit library for clinical trial design
- mtcreator
- Creating MAGE-TAB files using mtcreator
- multcomp
- Simultaneous Inference in General Parametric Models
- MultiABEL
- Multi-Trait Genome-Wide Association Analyses
- multiCA
- Multinomial Cochran-Armitage Trend Test
- multiplier
- Multiplier Analysis for SAM and FSAM
- multxpert
- Common Multiple Testing Procedures and Gatekeeping Procedures
- MuMIn
- Multi-Model Inference
- munfold
- Metric Unfolding
- munsellinterpol
- Interpolate Munsell Renotation Data from Hue/Chroma to CIE/sRGB
- mutils
- Basic Utilities for Data Management, Graphics, and Simulation
- mutoss
- Unified multiple testing procedures
- mvabund
- Statistical Methods for Analysing Multivariate Abundance Data
- MvBinary
- Modelling Multivariate Binary Data with Blocks of Specific One-Factor Distribution
- mvinfluence
- Influence Measures and Diagnostic Plots for Multivariate Linear Models
- mvProbit
- Multivariate Probit Models
- mvtnorm
- Multivariate Normal and t Distributions
- myFuncs
- Colins Usefull functions
- myplotrix
- Various plotting functions
- mzmatch.Data
- Orbitrap Mass Spectrometry raw data example files
- mzmatch.R
- mzmatch and PeakML integration for XCMS.
- nacopula
- Nested Archimedean Copulas
- nacopulaNew
- Nested Archimedean Copulas
- nadiv
- Functions to construct non-additive genetic relatedness matrices
- NameNeedle
- NameNeedle package
- namespace
- Provide namespace managment functions not (yet) present in base R
- nbpMatching
- Functions for Optimal Non-Bipartite Matching
- nccMLE
- MLE for nested case cohort and case-cohort designs
- ncdf.tools
- Easier 'NetCDF' File Handling
- nclbayes
- Functions, Demos and Examples of Bayesian Analysis and Basic MCMC
- nclRadvanced
- nclRadvanced
- nclRcourses
- Functions for R courses at Newcastle University
- nclRefficient
- nclRefficient
- nclRggplot2
- nclRggplot2
- nclRintroduction
- A nclRintroduction
- nclRintroductionB
- nclRintroductionB
- nclRmodelling
- nclRmodelling
- nclRpackage
- A package for the Newcastle University R courses.
- nclRprogramming
- nclRprogramming
- nclRprogrammingB
- nclRprogrammingB
- ndvits
- NDVI Time series extraction and analysis
- nea
- Network Enrichment Analysis
- neaGUI
- A user friendly R package to perform the network enrichment analysis (NEA).
- needleman.wunsch
- Needleman Wunsch computation
- neotoma
- A Package to access the Neotoma Paleoecological Database using an API.
- nephro
- Biostatistics utilities for nephrology
- netbenchmark
- Benchmarking of several gene network inference methods
- NetIndices
- Estimating network indices, including trophic structure of foodwebs in R
- netmes
- Exploratory Analysis of Gene Networks with Netmes, An R package for network-based measures
- NetSim
- A Social Networks Simulation Tool in R
- newboost
- New boosting algorithms
- nhanesaccel
- Process Accelerometer Data from NHANES 2003-2006
- nhanesdata
- Contains data from continuous NHANES (years 1999-2012).
- nicholsonppp
- Evolution simulation and classification
- NiLeDAM
- Monazite Datation for the NiLeDAM team
- NISTopt
- Nonlinear least squares examples from NIST in form of functions for optim() and optimx()
- NISTunits
- Fundamental Physical Constants and Unit Conversions from NIST
- nlcv
- Nested Loop Cross Validation
- nlme2test
- Testing pdKroneckeR class in nlme package.
- nlmeU
- Datasets and utility functions enhancing functionality of nlme package.
- nlmeUpdK
- New pdMat class: pdKronecker (prototype version described in Galecki, Burzykowski (2013) book)
- nlmrt
- Functions for Nonlinear Least Squares Solutions
- nloptwrap
- Wraps solvers in Package nloptr
- nlraa
- Non-linear regression for agricultural applications
- nlsr
- Functions for nonlinear least squares solutions to replace nls()
- nlstools
- Tools for nonlinear regression diagnostics
- NlsyLinks
- Utilities and kinship information for research with the NLSY
- NMOF
- Numerical Methods and Optimization in Finance
- nnetpredint
- Prediction Intervals of Multi-Layer Neural Networks
- NonDecompGraph
- NonDecomposable Graph
- nonlinearAnalysis
- R package for nonlinear time series analysis
- nopp
- Nash Optimal Party Positions
- nor1mix
- Normal (1-d) Mixture Models (S3 Classes and Methods)
- nordklimdata1
- Dataset for Climate Analysis with Data from the Nordic Region
- norm
- Analysis of multivariate normal datasets with missing values
- NormalLaplace
- The Normal Laplace Distribution
- npde
- Normalised prediction distribution errors for nonlinear mixed-effect models
- npFrontier
- Non-Parametric and Semi-Parametric Stochastic Frontier Analysis
- NRAIA
- Data sets from "Nonlinear Regression Analysis and Its Applications"
- NSA
- Post-normalization of total copy numbers
- nspack
- Utility functions only useful on computers accessible to Nick Sabbe
- nucim
- Nucleus imaging
- numbers
- Number-Theoretic Functions
- numDeriv
- Accurate Numerical Derivatives
- NumDfr
- Provide a performant alternative to data.frame wrt factors
- numericalecon
- Numerical Methods for Economists
- nwfscAgeingError
- Ageing error
- nwfscDeltaGLM
- Bayesian delta-GLM package for constructing indices of CPUE data
- nwfscMapping
- Mapping functions for NWFSC
- nwfscNLTS
- Non-linear time series
- nwfscSurveyCode
- What the package does (short line)
- obsSens
- Sensitivity analysis for Observational studies.
- OceanView
- Visualisation of Oceanographic Data and Model Output
- odeintr
- C++ ODE Solvers Compiled on-Demand
- odfWeave
- Sweave processing of Open Document Format (ODF) files
- OMBRE
- What the package does (short line)
- omnr.gillnet
- Gillnet size selectivity analysis
- Oncotree
- Estimating oncogenetic trees
- oompaBase
- Class Unions, Matrix Operations, and Color Schemes for OOMPA
- oompaData
- Data to Illustrate OOMPA Algorithms
- opefimor
- Option Pricing and Estimation of Financial Models in R
- OpenRepGrid
- Tools to analyse repertory grid data
- opentick
- R API to opentick databases
- operators
- Additional operators and utilities for R
- opm
- Analysing Phenotype Microarray and Growth Curve Data
- opmdata
- OmniLog(R) Phenotype Microarray Example Data
- opmextra
- Additional Functions for Analysing OmniLog(R) Phenotype Microarray Data
- optfntools
- Tools for assisting the preparation and testing of objective functions for optimization.
- optimgui
- EXPERIMENTAL: A GUI program to assist optimization problems in R
- optimr
- A Replacement and Extension of the 'optim' Function
- optimrx
- Expanded Replacement and Extension of the 'optim' Function
- optimx
- A Replacement and Extension of the 'optim' Function
- optimz
- A Replacement and Extension of the 'optim' Function
- optparse
- Command line option parser.
- optplus
- A wrapper for optimization methods (function minimization with at most bounds and masks).
- optreplace
- Trial package to replace optim() function with better codes
- OralHygiene
- Loads the Gingival epithelial cell line ExpressionSet object
- ORCME
- Order Restricted Clustering for Microarray Experiments
- orddata
- Generation of Artificial Ordinal and Binary Data
- orderbook
- Orderbook visualization/Charting software
- ordiconsensus
- Consensus of canonical ordinations through the canonical redundancy analysis
- OrgMassSpecR
- Organic Mass Spectrometry
- OriGen
- Fast Spatial Ancestry via Flexible Allele Frequency Surfaces
- oro.asl
- Rigorous - Aterial Spin Labelling
- oro.dicom
- Rigorous - DICOM Input / Output
- oro.dti
- Rigorous - Diffusion Tensor Imaging
- oro.nifti
- Rigorous - NIfTI+ANALYZE+AFNI Input / Output
- oro.pet
- Rigorous - Positron Emission Tomography
- orthogonalsplinebasis
- Orthogonal Bspline Basis Functions
- osmar
- OpenStreetMap and R
- ouch
- Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses
- OvarianData
- Ovarian Cancer TCGA Data
- p3d
- Plot 3d data and fitted surfaces
- pack
- Convert values to/from raw vectors
- packfor
- Forward Selection with permutation (Canoco p.46)
- PairTrading
- classical pair trading based on cointegration in finance
- paleoPhylo
- Biodiversity Analyses in a Paleontological and Phylogenetic Context
- papeR
- A toolbox for writing Sweave or other LaTeX-based papers and reports
- ParallABEL
- Parallel of Genome-Wide Association function
- ParallelStructure
- function to run parallel jobs in STRUCTURE
- parfm
- Parametric Frailty Models
- parma
- Portfolio Allocation and Risk Management Applications
- parsec
- PARtial orders in Socio-EConomics
- parser
- Detailed R source code parser
- partDSA
- Partitioning Using Deletion, Substitution, and Addition Moves
- partykit
- A Toolkit for Recursive Partytioning
- pasmae
- What the package does (short line)
- patches
- Collection of hot patches for R
- patchwork
- Allele-specific Copy Number Analysis of whole genome data
- patchworkCG
- Allele-specific Copy Number Analysis of CompleteGenomics Whole Genome data
- patchworkData
- Data for patchwork package.
- paternity
- Paternity tests using SNPs
- pathview
- a tool set for pathway based data integration and visualization
- pawacc
- Physical activity with accelerometers
- pbapply
- Adding Progress Bar to '*apply' Functions
- pcalg
- Methods for Graphical Models and Causal Inference
- PCDimension
- Finding the Number of Significant Principal Components
- PCLRLib
- What the package does (short line)
- PCM
- Cloud and snow discrimination on AVHRR imagery
- pco
- Panel Cointegration Tests
- pcurve
- Principal curve analysis
- pd.081229.hg18.promoter.medip.hx1
- Platform Design Info for NimbleGen 081229_hg18_promoter_medip_hx1
- pd.2006.07.18.mm8.refseq.promoter
- Platform Design Info for NimbleGen 2006-07-18_mm8_refseq_promoter
- pd.2006.10.31.rn34.refseq.promoter
- Platform Design Info for NimbleGen 2006-10-31_rn34_refseq_promoter
- pd.atdschip.tiling
- Platform Design Info for Affymetrix Atdschip_tiling
- pd.charm.hg18.example
- Platform Design Info for the example charmData dataset
- pdCluster
- Partial Discharge Clustering
- pder
- panel data econometrics with R
- pd.feinberg.hg18.me.hx1
- Platform Design Info for the CHARM DNA methylation microarray
- pd.feinberg.mm8.me.hx1
- Platform Design Info for NimbleGen feinberg_mm8_me_hx1
- pdfutils
- PDF ultilities based on the PDF Clown Java library
- pedigreemm
- Pedigree-based mixed-effects models
- pedigreeTools
- Tools for handling pedigrees
- PeerPerformance
- Peer performance analysis in R
- Peirce
- Functions for removing outliers, with illustrations
- pems
- tools for the analysis and visualisation of pems data
- pems.utils
- Portable Emissions (and Other Mobile) Measurement System Utilities
- PerFit
- Person Fit
- PerformanceAnalytics
- Econometric Tools for Performance and Risk Analysis
- p.exact
- Exact P-values for Genome-Wide Association Analyses in Inbred Populations
- pfda
- Paired Functional Data Analysis
- PFIM
- Pharmacokinetic/Pharmacodynamic Fisher Information Matrix
- pgfSweave
- Quality speedy graphics compilation and caching with Sweave
- phenopix
- Process Digital Images of a Vegetation Cover
- phrapl
- Phylogeography using Approximate Likelihood
- phtt
- Panel Data Analysis with Heterogeneous Time Trends
- phyext
- An extension of some of the classes in phylobase. Tree objects now support subnodes on branches
- phylobase
- Base package for phylogenetic structures and comparative data
- PhyloOrchard
- Important and/or useful phylogenetic datasets
- phyloRcppExamples
- Examples of phylogenetic computations with Rcpp
- PhysioBankR
- PhysioBank R interface
- Pi
- Leveraging Genetic Evidence to Prioritise Drug Targets at the Gene, Pathway and Network Level
- PI
- Networking Genetic Evidence to Prioritise Drug Targets at the Gene, Pathway and Network Level
- pi0
- Estimating the proportion of true null hypotheses for FDR
- picante
- R tools for integrating phylogenies and ecology
- Piet
- DNA CNV analysis tools based on fused lasso type of model
- pimdevel
- Probabilistic Index Models
- pimold
- Probabilistic Index Models
- pivotals
- Functions implementing pivotal Monte Carlo methods
- pkgmaker
- Package development utilities
- pkgutils
- Utilities for Creating R Packages
- PKPDa
- Examples of PK/PD analysis.
- PKPDx
- Examples of PK/PD analysis for one subject using R, SAAM2
- plantbreeding
- Analysis and visualization of data from plant breeding and genetics experiments
- playitbyr
- Representing and exploring data through sound
- plm
- Linear Models for Panel Data
- plot3D
- Plotting Multi-Dimensional Data
- plot3Drgl
- Plotting Multi-Dimensional Data - Using 'rgl'
- plotGoogleMaps
- Plot Spatial or Spatio-Temporal Data Over Google Maps
- plottools
- Tools for plotting with style
- plsgenomics
- PLS Analyses for Genomics
- plugdensity
- Plug-in Kernel Density Estimation
- plutils
- Tools for plotting with style
- pmg
- Poor Man's GUI
- Pmisc
- Various Utilities for knitr and inla
- pmoments
- Partial Moments
- pnl
- Profit and Loss calculation for financial instruments and portfolio's.
- polnet
- Analysis of Political Networks.
- polrep
- Calculate Political Representation Scores
- Polychrome
- Qualitative Palettes with Many Colors
- polycor
- Polychoric and Polyserial Correlations
- polySegratio
- Simulate and test marker dosage for dominant markers in autopolyploids
- polySegratioMM
- Bayesian mixture models for marker dosage in autopolyploids
- pomp
- Statistical Inference for Partially Observed Markov Processes
- poplab
- Population Lab
- popmoments
- Population-level moments
- POT
- Generalized Pareto Distribution and Peaks Over Threshold
- pplane
- Phase plane plots of 2D nonlinear systems
- ppstat
- Point Process Statistics
- pr2
- Predictive R-squared
- pracma
- Practical Numerical Math Functions
- PredictABEL
- Assessment of risk prediction models
- predIntervals
- predIntervals
- prefmod2
- Paired Comparison Models for Preferences
- prepRISA
- prepRISA
- PreProcess
- Basic Functions for Pre-Processing Microarrays
- PricingMixedTS
- Option Pricing with exponential MixedTS process
- primprod
- Modelling Primary production based on P-I curves
- probdistr
- Handbook on Probability Distributions
- ProbeAnnotator
- Faste Gene Annotation in R
- processdata
- Process Data
- profdpm
- Profile Dirichlet Process Mixtures
- profileModel
- Tools for profiling inference functions for various model classes
- ProstateData
- Data to Illustrate the Tail-Rank Statistic
- prr
- generalized probabilistic range ranker
- pseudoRNG
- Package for pseudo random number generation.
- PSM
- Non-Linear Mixed-Effects modelling using Stochastic Differential Equations.
- psychobench
- Supplementary package "(Psycho-)Analysis of Benchmark Experiments"
- psychotree
- Recursive Partitioning Based on Psychometric Models
- psytabs
- Produce well-formatted tables for psychological research
- ptinpoly
- Point-In-Polyhedron Test (2D and 3D)
- punitroots
- Unit Roots in Panels of Time Series
- PVAClone
- Population Viability Analysis with Data Cloning
- PwrGSD
- Power in a Group Sequential Design
- PythonInR
- Use Python from Within R
- qaqc
- Quality Assurance and Quality Control Procedures for DICOM Data
- QCA3
- Yet another package for Qualitative Comparative Analysis
- QCqPCR
- Functions for quality control of RT-qPCR data
- qfa
- Tools for Quantitative Fitness Analysis (QFA) of Arrayed Microbial Cultures Growing on Solid Agar Surfaces
- qfaBayes
- Tools for modelling the growth dynamics of arrays of large numbers of colonies and performing quantitative fitness analysis (QFA).
- qmao
- Quantmod Add-on
- qmrobust
- Quality Management: Examples from the concrete industry
- qrmtools
- Tools for Quantitative Risk Management
- qRNASeq
- What the package does (short line)
- qtlDesign
- Design of QTL experiments
- QTLNetworkR
- Interactive software package for QTL visualization
- qtl.outbred
- Interface for Genotype Probabilities from Outbred Intercross
- Qtools
- Utilities for Quantiles
- QuACN
- QuACN: Quantitative Analysis of Complex Networks
- quaddisc
- Quadratic discrepancies
- quadmod
- Quadratic programming modeling language
- qualtrics
- Qualtrics Survey Data Access
- quantstrat
- Quantitative Strategy Model Framework
- quasiRNG
- Toolbox for quasi random number generation.
- queue
- This packages provides an interface for a queue class along with providing a uni-process queue class.
- R2admb
- ADMB to R interface functions
- r2dRue
- 2d Rain Use Efficience model
- R2HTML
- HTML exportation for R objects
- R2STATS
- A GTK GUI for fitting and comparing GLM and GLMM in R
- r4ss
- R code for Stock Synthesis
- R4X
- Manipulation of XML structures
- racd
- Autoregressive Conditional Density Models
- ragram
- Radargrammetry
- rAltmetric
- Retrieves altmerics data for any published paper from altmetric.com
- ramPATH
- ramPATH
- random
- True random numbers using random.org
- randomForest
- Breiman and Cutler's random forests for classification and regression
- randomSubspace
- Random Subspace
- randtoolbox
- Toolbox for Pseudo and Quasi Random Number Generation and RNG Tests
- RandVar
- Implementation of Random Variables
- rangeMapper
- A platform for the study of macroecology of life history traits
- Rankcluster
- Model-Based Clustering for Multivariate Partial Ranking Data
- rasterExt
- raster and external programs (FWtools, ArcGIS)
- rasterFW
- raster and FWtools
- rasterVis
- Visualization methods for the raster package
- raw.means.plot
- Raw-Means Plots for Experimental Designs
- R.batch
- Methods to run batch jobs in R
- RBigQuery
- BigQuery for R
- Rbooks
- Interactive course notes using R
- rbrothers
- rbrothers: multiple change-point recombination detection
- rbsa
- Ancillary Functions for R Programming
- rbsb
- set of ancillary functions
- rcdklibs
- rcdklib - CDK libraries packaged for R
- rcicr
- Reverse-Correlation Image-Classification Toolbox
- Rcmdr
- R Commander
- Rcmdr1
- R Commander
- Rcmdr2
- R Commander
- Rcmdr205
- R Commander
- RcmdrDevel
- R Commander
- rcmdrfuzzyclust
- R Commander Plug-in for Fuzzy Clustering Methods (Fuzzy C-Means and Gustafson Kessel)
- RcmdrMisc
- R Commander Miscellaneous Functions
- RcmdrPlugin.BiclustGUI
- 'Rcmdr' Plug-in GUI for Biclustering
- RcmdrPlugin.BiclustGUI.Extra
- Title: 'Rcmdr' Plug-in GUI for Biclustering
- RcmdrPlugin.EcoVirtual
- Rcmdr EcoVirtual Plugin
- RcmdrPlugin.FactoMineR
- Graphical User Interface for FactoMineR
- RcmdrPlugin.FuzzyClust
- R Commander Plug-in for Fuzzy Clustering Methods (Fuzzy C-Means and Gustafson Kessel)
- RcmdrPlugin.lfstat
- Rcmdr Plug-in for Low Flow Analysis
- RcmdrPlugin.NMBU
- R Commander Plug-In for statistics at NMBU
- RcmdrPlugin.SensoMineR
- Graphical User Interface for SensoMineR
- RcmdrPlugin.sos
- Efficiently search the R help pages
- RcmdrPlugin.survival
- R Commander Plug-in for the 'survival' Package
- RcmdrPlugin.TeachingDemos
- Rcmdr Teaching Demos Plug-in
- RcmdrPlugin.temis
- Graphical Integrated Text Mining Solution
- RcmdrPlugin.UCA
- UCA Rcmdr Plug-in
- RcmdrPlugin.UMB
- R Commander Plug-In for statistics at UMB
- rcolgem
- statistical inference and modeling of genealogies generated by epidemic and ecological processes
- rcolony
- Tools for implementation and visualisation of Colony2 and its outputs.
- Rcpp
- Seamless R and C++ Integration
- RcppArmadillo
- Rcpp integration for Armadillo templated linear algebra library
- RcppBDT
- Rcpp bindings for the Boost Date_Time library
- RcppClassic
- Deprecated 'classic' Rcpp API
- RcppClassicExamples
- Examples using RcppClassic to interface R and C++
- RcppCNPy
- Rcpp bindings for NumPy files
- RcppDE
- Global optimization by differential evolution in C++
- RcppExamples
- Examples using Rcpp to interface R and C++
- RcppGSL
- Rcpp integration for GNU GSL vectors and matrices
- RcppModels
- Classes for linear and generalized linear and nonlinear models
- RcppProgress
- An interruptible progress bar with OpenMP support for c++ in R packages
- RcppProgressExample
- Example use of the RcppProgress package
- RcppRandomSFMT
- A R and Rcpp interface to the SIMD-oriented Fast Mersenne Twister (SFMT) Random Number Generator provided by http://www.agner.org/random Randomc.
- RcppSMC
- Rcpp bindings for Sequential Monte Carlo
- RcppXts
- Interface the xts API via Rcpp
- Rcsdp
- R interface to the CSDP semidefinite programming library
- RCSI
- An S4 interface to the CSI UA API
- RDEC
- RDEC -- regression with damped exponential correlation
- Rdonlp2
- An R extension library to use Peter Spelluci's DONLP2 from R.
- rds2
- Population size and degree distribution estimation in respondent driven sampling.
- rdyncall
- Improved Foreign Function Interface (FFI) and Dynamic Bindings to C Libraries (e.g. OpenGL)
- ReacTran
- Reactive Transport Modelling in 1d, 2d and 3d
- ReadqPCR
- Read qPCR data
- realized
- Realized
- rebastaba
- Handling Bayesian networks
- rebmix
- Finite Mixture Modeling, Clustering & Classification
- recommenderlabBX
- Book-Crossing Dataset (BX) for recommenderlab
- recommenderlabJester
- Jester Dataset for 'recommenderlab'
- recommenderlabMahout
- Developing and testing Recommender Algorithms using Apache Mahout and R
- RecSelect
- Using GRTS to sample along time
- REddyProc
- Data processing and plotting utilities of (half-)hourly eddy-covariance measurements
- ref
- References for R
- refund.wave
- Wavelet-Domain Regression with Functional Data
- regr0
- Building regression models
- rehh
- Searching for footprints of selection using Haplotype Homozygosity based tests
- REIDS
- Random Effects for the Identification of Differential Splicing
- related
- related: an R package for analyzing pairwise relatedness data based on codominant molecular markers
- Reliability
- Functions for estimating parameters in software reliability models
- RemoteREngine
- RMI based REngine implementation
- RemoteSensing
- Remote Sensing
- rentrez
- Entrez in R
- reo
- Random effects ordination
- Reol
- R interface to the Encyclopedia of Life
- RepeatABEL
- GWAS for Multiple Observations on Related Individuals
- replicationgraph
- Replication graph
- ResourceSelection
- Resource Selection (Probability) Functions for Use-Availability Data
- RespChamberProc
- Processing data from respiration chambers
- REST
- RcmdrPlugin Easy Script Templates
- restorepoint
- Debugging with restore points
- rfFC
- Random Forest Feature Contributions
- RFLPtools
- Tools to analyse RFLP data
- RForgeTools
- R-Forge Build and Check Tools
- rfTools
- R-Forge Build and Check Tools
- rgarch
- Flexible GARCH modelling in R
- Rgears
- Various R utility functions.
- RGIFT
- Create quizzes in GIFT Format
- rgl
- 3D Visualization Using OpenGL
- rglwidget
- 'rgl' in 'htmlwidgets' Framework
- rgmdh
- group method of data handling
- RgoogleMaps
- Overlays on Static Maps
- rgraph6
- Interface to graph6 format for R
- rgrs
- Functions to make R usage in social sciences easier (in french)
- RGtk2Extras
- Data frame editor and dialog making wrapper for RGtk2
- rHanso
- An R Implementation of Hybrid Algorithm for Non-Smooth Optimization (HANSO)
- rhr
- Package to estimate home ranges through a graphical user interface.
- rhte
- Robust Horvitz-Thompson Estimation
- RHydro
- Classes and methods for hydrological modelling and analysis
- RHydroWasimData
- Example data to demonstrate RHydro for WaSiM-ETH
- RiceMap
- Mapping rice area with time series of MODIS images
- rich
- Computes and Compares Species Richnesses
- rieger
- Radiation data of Reiger et al (2004)
- RImageJ
- R bindings for ImageJ
- rImfil
- An R Implementation of Implicit filtering algorithm
- rinat
- Access iNaturalist data through APIs
- Rinfo
- R package usage statistics
- RiskBasedPortfolios
- Computation of risk-based portfolios
- riskPlots
- Risk plots
- RiskPortfolios
- Computation of Risk-Based Portfolios
- RiverSurvey
- River Research and Modelling
- RJEMM
- R Implementation of Java Extensible Markov Models
- rjpod
- PDF ultilities based on the jPod Java library
- rJython
- R interface to Python via Jython
- RLadyBug
- Analysis of Infectious Diseases using Stochastic Epidemic Models
- rLiDAR
- LiDAR Data Processing and Visualization
- rlogit
- Random parameters logit model
- RlpSolve
- Interface to Lp_solve v. 5.5 to solve linear/integer programs
- RlpSolveAPI
- Interface to lp_solve v. 5.5
- RMacoqui
- Identifying and describing chorotypes based on similarity between species distributions
- rmgarch
- Multivariate GARCH models
- RMixtComp
- Mixture Composer
- rmmseg4j
- R interface to the Java Chinese word segmentation system of mmseg4j
- RMonetDB
- Provides access to MonetDB through the JDBC interface
- Rmpfr
- R MPFR - Multiple Precision Floating-Point Reliable
- rm.plot
- Raw-Means Plots for Experimental Designs
- rmv
- Multivariate random number generation
- RnavGraphImageData
- Some image data used in the RnavGraph package demos
- RNetLogo
- Provides an Interface to the Agent-Based Modelling Platform NetLogo
- rngSFMT2
- SFMT random number generator
- rngtools
- Utility functions for working with Random Number Generators
- rngWELL
- Toolbox for WELL Random Number Generators
- rngWELLOriginal
- Well Equidistributed Long-period Linear modulo 2 random number generators by F. Panneton, P. L'Ecuyer, and M. Matsumoto.
- Rnlminb2
- An R extension library for constrained optimization with nlminb.
- RNMImport
- Tools for importing and manipulating NONMEM data.
- rnso
- An R Implementation of Hybrid Algorithm for Non-Smooth Optimization (HANSO)
- RobAStRDA
- Interpolation Grids for Packages of the 'RobASt' - Family of Packages
- RobExtremes
- Optimally Robust Estimation for Extreme Value Distributions
- robKalman
- Robust Kalman Filtering
- RobRex
- Optimally robust influence curves for regression and scale
- RObsDat
- Store your observations: R-Package to the Observations Data Model from CUAHSI
- robts
- Robust Time Series Analysis
- robust
- Port of the S+ "Robust Library"
- robustDist
- Calculation of labeled molecular distances robust to certain model misspecification
- robustX
- eXtra / eXperimental Functionality for Robust Statistics
- rodbcExt
- RODBC Extension
- ROI
- R Optimization Infrastructure
- ROI.models.netlib
- 'ROI' Optimization Problems based on 'NETLIB'
- ROML
- R Optimization Modeling Language
- ROML.portfolio
- ROML-Portfolio-Optimization
- rootoned
- Roots of one-dimensional functions in R-only code
- rootSolve
- Nonlinear Root Finding, Equilibrium and Steady-State Analysis of Ordinary Differential Equations
- ROptEst
- Optimally Robust Estimation
- Ross
- Ross Ordering
- roxygen
- Literate Programming in R
- Rpad
- Workbook-style, web-based interface to R
- rpaoding
- R interface to the Java Chinese word segmentation system of paoding
- rpdfclown
- PDF ultilities based on the PDF Clown Java library
- RpepXML
- R interface to the pepXML standard
- rpg
- Easy Interface to Advanced PostgreSQL Features
- Rphree
- Interface to the geochemical modelling program PHREEQC
- rPithon
- Use Python by Communicating Using a Pipe
- rpkgstats
- R package usage statistics
- rPlant
- R interface to the Agave and Foundation API
- rpnf
- Point and Figure Package
- RPPanalyzer
- Reads, Annotates, and Normalizes Reverse Phase Protein Array Data
- rProcessing
- Simple R/Processing Interface
- Rproj4
- Rproj4
- rptR
- Repeatability for Gaussian and non-Gaussian data
- rpubchem
- rpubchem - Interface to the PubChem Collection
- rpubmed
- rpubmed
- RQDA
- R-based Qualitative Data Analysis
- RQDAtm
- A package to bridge RQDA and tm
- rqpd
- Regression Quantiles for Panel Data
- Rquadprog
- An R extenstion library to use quadprog for portfolio Optimization
- RQuantLib
- R interface to the QuantLib library
- RRegArch
- General univariate ARCH models simulation and estimation
- RRM
- Implementation of ReliaSoft Ranking Method
- rrMisc
- Little Helpers
- rrp
- Random Recursive Partitioning
- rsae
- Robust Small Area Estimation
- Rsafd
- Statistical Analysis of Financial Data in R
- rSALMO
- Simulation of ecological lake models
- rsap
- Basic Statistics and Data Analysis
- rseg
- recursive segmentation (rseg)
- rsem
- Robust Structural Equation Modeling with Missing Data and Auxiliary Variables
- Rshare
- Shared environment across multiple independent R sessions
- RSiena
- Siena - Simulation Investigation for Empirical Network Analysis
- RSienaTest
- Siena - Simulation Investigation for Empirical Network Analysis
- RSiteSearch
- RSiteSearch
- rsmartcn
- R interface to the Java Chinese word segmentation system of smartcn
- Rsocialdata
- Handling survey data in R. (official release)
- Rsocialdata0
- Handling survey data in R. (beta version, not for use)
- Rsocialdata.network
- Network tools for the Rsocialdata package
- Rsocp
- An R extenstion library to use SOCP from R.
- Rsolnp
- General Non-Linear Optimization
- Rsolnp2
- Non-linear Programming with non-linear Constraints
- rspecies
- Multivariate Methods in Ecology with R: Simulating Communities
- rstats
- R package usage statistics
- Rstem
- Interface to Snowball implementation of Porter's word stemming algorithm.
- rsubgroup
- Subgroup Discovery and Analytics
- R.synchronize
- Synchronious locking mechanisms
- rtanalyze
- RTanalyze, reaction times storage and analysis.
- RTCGAToolbox
- A new tool for exporting TCGA Firehose data
- rtest
- unit and system testing for R
- rtkore
- STK++ Core Library Integration to R using Rcpp
- RTmodels
- Utility function for modeling and simulation of (sub-second) response times in cognitive psychology
- Rtnmin
- Truncated Newton Function Minimization with Bounds Constraints
- rtop
- Interpolation of Data with Variable Spatial Support
- rts
- Raster Time Series Analysis
- Rtts
- Convert Text into Speech
- RttsDevelop
- Convert Text into Speech (Voice Files in .mp3, .flv, and .wav Format)
- rugarch
- Univariate GARCH models
- ruleR
- Generating numeric sequence items for intelligence tests
- rusquant
- Financial Modelling Framework extension for Russian stock market
- russmisc
- A repository for a variety of useful functions.
- Rvmminx
- Variable metric nonlinear function minimization with bounds constraints - experimental
- RVowpalWabbit
- R interface to the Vowpal Wabbit
- Rwave
- Time-Frequency analysis of 1-D signals
- RWeather
- R wrapper around the Yahoo! Weather, Google Weather and NOAA APIs
- Rweibo
- An interface to the Weibo open platform
- RWOAG
- Performs a Random Walk on a Graph
- Rwordseg
- Chinese word segmentation
- rworldmap
- Mapping global data, vector and raster.
- rworldxtra
- Country boundaries at high resolution.
- RXKCD
- Get XKCD comic from R
- s4vd
- Biclustering via Sparse Singular Value Decomposition Incorporating Stability Selection
- SACCR
- SA Counterparty Credit Risk under Basel III
- safeBinaryRegression
- Safe Binary Regression
- sampSurf
- Sampling Surface Simulation for Areal Sampling Methods
- sandwich
- Robust Covariance Matrix Estimators
- sapa
- Spectral Analysis for Physical Applications
- SASmixed
- Data sets from "SAS System for Mixed Models"
- SATK
- Scaling Analysis Toolkit
- sbfac
- Semiparametric Bayesian Factor Analytic Copula Models
- SBMLModels
- A collection of SBML Models with some experimental and simulated datasets.
- SBSA
- Simplified Bayesian Sensitivity Analysis
- scan
- Single-Case Data Analyses for Single and Multiple AB Designs
- scatterplot3d
- 3D Scatter Plot
- schwartz97
- A package on the Schwartz two-factor commodity model
- SCiAn
- Spectrophotometry : CInetic ANalysis
- SciencePo
- Political Behaviour Analysis Tool
- scimapClient
- Collects and Reports Usage Data on R Packages
- scoring
- Proper Scoring Rules
- scpt
- Change Point Test for Spatio-Temporal Functional Data
- scriptests
- Transcript-Based Unit Tests that are Easy to Create and Maintain
- SDaA
- Sampling: Design and Analysis
- sdafe
- Companion to Statistics and Data Analysis for Financial Engineering
- sde
- Simulation and Inference for Stochastic Differential Equations
- sdm
- Species Distribution Modelling
- sdmo
- Species Distribution Modelling (old version)
- seacarb
- Calculates parameters of the seawater carbonate system
- sealevel
- Utility functions for reading and analyzing trends in common used sealevel archives.
- SearchTrees
- Spatial Search Trees
- season
- Seasonal analysis of health data
- seedDisp
- Dispersal of seed routines
- SegAnnot
- Annotation-aware segmentation via dynamic programing
- Segmentor3IsBack
- A Fast Segmentation Algorithm
- selectivity
- My First Collection of Functions
- SelvarMix
- Regularization for Variable Selection in Model-Based Clustering and Discriminant Analysis
- sem1
- Structural Equation Models
- sem3
- Structural Equation Models
- semdiag
- Structural equation modeling diagnostics
- semPLSModelSelection
- Structural Equation Modeling Using Partial Least Squares
- semspec
- Unified Specification of Structural Equation Models
- sensitivity
- Sensitivity Analysis
- sensitivityPStrat
- Principal Stratification Sensitivity Analysis Functions
- SensoMineR
- Sensory data analysis with R
- SeqCNVCBS
- Scan Statistics for CNV Detection with CBS
- seqdist2
- Distance Between State Sequences
- seqinr
- Biological Sequences Retrieval and Analysis
- seqTools
- Analysis of nucleotide, sequence and quality content on fastq files.
- setRNG
- Set (Normal) Random Number Generator and Seed
- sGE
- Segmentation of GE data
- sglOptim
- Sparse group lasso generic optimizer
- SglOptimizer
- Sparse group lasso optimizer
- shape
- Functions for Plotting Graphical Shapes, Colors
- sharpshootR
- A Soil Survey Toolkit
- sharx
- Models and Data Sets for the Study of Species-Area Relationships
- SIBER
- Systematic Identification of Bimodally Expressed Genes Using RNAseq Data
- SIGIL
- Data Sets and Utility Functions for the 'SIGIL' Course
- SII
- Calculate ANSI S3.5-1997 Speech Intelligibility Index
- simdat.base
- Simulating data in R
- simdat.gui
- Shiny GUIs for the simdat.base data simulation package
- simecol
- Simulation of Ecological (and Other) Dynamic Systems
- simecolModels
- Model collection for the simecol package
- simecolUtil
- Collection of Helper Utilities
- simfms
- Simulation of clustered multi-state data
- simplace
- Interface to use the modelling framework SIMPLACE
- simsalabim
- A collection of methods for time series analysis and signal detection.
- sintro
- Introduction to R: sintro
- sirad
- Functions for Calculating Daily Solar Radiation and Evapotranspiration
- sjemea
- Multi electrode analysis
- skellam
- Densities and Sampling for the Skellam Distribution
- SkewHyperbolic
- The Skew Hyperbolic Student t-Distribution
- Sleuth2
- Data Sets from Ramsey and Schafer's "Statistical Sleuth (2nd Ed)"
- Sleuth3
- Data Sets from Ramsey and Schafer's "Statistical Sleuth (3rd Ed)"
- SlideDesignerGUI
- Slide Designer GUI Package
- SMCS4
- Sequential Monte Carlo samplers in S4
- smd
- Sparse Multivariate Diffusions
- smde
- Sparse Multivariate Differential Equations
- smfsb
- SMfSB 2e: Stochastic Modelling for Systems Biology, second edition
- SmoothHazard
- Smooth models for interval-censored data with applications to survival and illness-death models
- snatm
- Combine Social Network Analysis and Text Mining
- snopgof
- Single-observation NOn-Parametric Goodness Of Fit
- SNPRelate
- Parallel Computing Toolset for Genome-Wide Association Studies (GWAS)
- SobolIndices
- Computing the Sobol Indices
- SobolSensitivity
- Computing the Sobol Sensitivity Indices
- softclassval
- Soft Classification Performance Measures
- softmaxreg
- Training Multi-Layer Neural Network for Softmax Regression and Classification
- soilDB
- Soil Database Interface
- SoilR
- Models of Soil Organic Matter Decomposition
- soils
- spatial soil data related functions
- soil.spec
- Soil Spectroscopy Tools and Reference Models
- solaR
- Solar Photovoltaic Systems
- sonicLength
- Estimating Abundance of Clones from DNA fragmentation data
- sorvi
- sorvi - avoimen datan tyokalupakki
- sos
- Search Contributed R Packages, Sort by Package
- spacemakeR
- Spatial modelling
- SparseGrid
- Sparse grid integration in R
- sparseLDA
- Sparse Discriminant Analysis
- spatialClust
- Spatial Clustering using Fuzzy Geographically Weighted Clustering
- SpatialExtremes
- Modelling Spatial Extremes
- spatialkernel
- Nonparametric estimation of spatial segregation in a multivariate point process
- spatial.tools
- R Functions for Working with Spatial Data
- SpaTimeClus
- Model-Based Clustering of Spatio-Temporal Data
- spcopula
- Copula Driven Spatio-Temporal Analysis
- spd
- Semi Parametric Distribution
- spdep
- Spatial Dependence: Weighting Schemes, Statistics and Models
- spdyn
- Exploratory space-time data analysis
- specfun
- Special Functions
- specif
- Word Specificity
- SpecLibDolphin2011
- Mass Spectral Library Dolphin Blubber 2011
- SpecLibExample
- Example OrgMassSpecR Mass Spectral Library
- spectral.methods
- Singular Spectrum Analysis (SSA) Tools for Time Series Analysis
- spectro
- Spectroscopy data analysis
- speedR
- A GUI based importing and filtering tool
- speedRlibs
- Package containing the required libraries (jars) for speedR
- speedRlibTF
- speedR's table filter library
- spfrontier
- Spatial Stochastic Frontier Models
- spgrass
- Interface between GRASS 7+ geographical information system and R
- spgrass7
- Interface between GRASS 7 Geographical Information System and R
- sphet
- Estimation of Spatial Autoregressive Models with and without Heteroskedastic Innovations
- spider
- Species Identity and Evolution in R
- spiderDev
- Species Identity and Evolution in R--development
- spinyReg
- Sparse Generative Model and Its EM Algorithm
- splancs
- Spatial and Space-Time Point Pattern Analysis
- splinesurv
- Nonparametric bayesian survival analysis
- splits
- SPecies' LImits by Threshold Statistics
- splus2R
- Supplemental S-PLUS functionality in R
- spnet
- Plotting (Social) Networks on Maps
- SportsAnalytics
- Infrastructure for Sports Analytics
- spring
- Fit the SPRING model
- sprof
- Profiling, timing and optimisation utilities
- spse
- Spatial Simultaneous Equations and Spatial Sur Model
- sqliteTools
- sqliteTools
- sqlsurvey
- analysis of very large complex survey samples (experimental)
- SQN
- subset quantile normalization
- SQUAREM
- Squared extrapolation methods for accelerating fixed-point iterations
- SRS
- Subject Randomization System
- ssa
- Singular Spectrum Analysis
- sse
- Sample Size Estimation
- stabledist
- Stable Distribution Functions
- stablelearner
- Stability Assessment of Statistical Learning Methods
- stacomiR
- Fish Migration Monitoring (stacomiR)
- stacomirtools
- ODBC Connection Class for Package stacomiR
- STAR
- Spike Train Analysis with R
- STARStools
- R functions for working spatial/remote sensing data.
- Stat2Data
- Datasets for Stat2
- statcomp
- Statistical Complexity and Information Measures for Time Series Analysis
- STdiag
- Functions to Plot a Structure-Time Diagram
- stocks
- Fast Functions for Stock Market Analysis
- stosim
- Stochastic Simulator for Reliability Modeling of Repairable Systems
- stpp
- Space-Time Point Pattern simulation, visualisation and analysis
- strat
- Functions and data useful for social stratification research
- StrategySwitch
- Strategy Switch Model
- streamFPM
- Implementation of Frequent Pattern Mining for stream
- streamMovingGenerator
- Moving Generator
- streamtNNfast
- Fast implementation for tNN in stream
- stringi
- THE string processing package for R
- StructureTimeDiagram
- This package provides functions to plot a structure-time diagram
- subgroup
- Obsoleted package - use rsubgroup!
- subgroup.discovery
- Obsoleted package - use rsubgroup!
- subplex
- Subplex Optimization Algorithm
- summarize
- Summarize distributions in a concise way
- Sunclarco
- Survival Analysis using Copula's
- superbiclust
- Generating Robust Biclusters from a Bicluster Set (Ensemble Biclustering)
- SuperCurve
- RPPA Analysis Package
- SuperCurveGUI
- 'SuperCurve' GUI Package
- SuperCurveSampleData
- SuperCurve RPPA Sample Data
- supraHex
- A Supra-Hexagonal Map for Analysing Tabular Omics Data
- SURDES
- Functions for a stratified SURvey DESign
- surrosurv
- Evaluation of Failure Time Surrogate Endpoints in Individual Patient Data Meta-Analyses
- survbart
- Survival analysis with BART
- surveillance
- Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic Phenomena
- survey
- Analysis of Complex Survey Samples
- SurveyCode
- What the package does (short line)
- survGenesInterim
- Simulation of Survival Studies with Microarray Data
- survMisc
- Miscellaneous Functions for Survival Data
- Survomatic
- Analysis of longevity data.
- SVILD
- Summaries of Variability of Irregularly Spaced Longitudinal Data
- swale
- SWALE: Simultaneous Waveform Amplitude and Latency Estimation.
- swissMrP
- Multilevel Regression with Post-Stratification for Switzerland
- synbreed
- Framework for the Analysis of Genomic Prediction Data using R
- synchronicity
- Boost mutex functionality for R.
- synchrony
- Methods for computing spatial, temporal, and spatiotemporal statistics
- synDss
- Recombination detection using synonymous distances
- SynergizeR
- Interface to The Synergizer service for translating between sets of biological identifiers.
- systemfit
- Estimating Systems of Simultaneous Equations
- tab
- Functions for Creating Summary Tables for Statistical Reports
- tables
- Formula-Driven Table Generation
- TailRank
- The Tail-Rank Statistic
- tao
- The great Tao package
- TAPS
- Tumor Abberation Prediction Suite
- tclish
- 'Tcl/Tk' Utilities Package
- tdisplay
- Tool Box for Data Importation and Display
- TeachingDemos
- Demonstrations for Teaching and Learning
- termstrc
- Zero-coupon Yield Curve Estimation
- ternaryplot
- Infrastructure for ternary plots and ternary classifications (S3-classes)
- test
- test
- testcpp
- Testing external pointers with finalization in R using C++
- texmex
- Threshold exceedences and multivariate extremes
- texreg
- Conversion of R Regression Output to LaTeX or HTML Tables
- tfMiscDevel
- Time Frame Extensions (in Development)
- tfplot
- Time Frame User Utilities
- tframe
- Time Frame Coding Kernel
- tframePlus
- Time Frame Coding Kernel Extensions
- TFX
- R API to TrueFX(tm)
- TH.priv
- TH's private functions
- Thresher
- Threshing and Reaping for Principal Components
- Tides
- Tides
- tikzDevice
- R Graphics Output in LaTeX Format
- timebart
- Survival analysis with BART: timebart
- timeDate
- Rmetrics - Chronological and Calendar Objects
- timeSeries
- Rmetrics - Financial Time Series Objects
- TimeWarp
- Date Calculations and Manipulation
- TIMP
- Fitting Separable Nonlinear Models in Spectroscopy and Microscopy
- titanQC
- QC Procedures for the GeneTitan platform
- tkrgl
- TK widget tools for rgl package
- tldutils
- Various utility functions
- tlocoh
- Constructs homeranges and explores time use patterns from location data
- tlocoh.dev
- Development package for tlocoh
- tm
- Text Mining Package
- tmcn
- A Text mining toolkit for international characters especially for Chinese.
- tmcn.crfpp
- R interface to CRF++ for conditional random fields
- tmcn.word2vec
- R interface to word2vec
- tmdl
- Flow and Load Duration Curve plots for TMDL
- tme
- Teaching Marketing Engineering with R
- tm.plugin.sentiment
- Text corpus sentiment analysis
- TopKLists
- Inference, Aggregation and Visualization for Top-K Ranked Lists
- tourr
- Implement tour methods in pure R code
- toyRpkg
- Toy R package
- traceRkinetic
- Kinetic analysis for dynamic nuclear imaging: compartmental models
- track
- Store Objects on Disk Automatically
- tradesys
- Trading System Modelling
- Trading
- Trades, Curves, Rating Tables, Add-on Tables, CSAs
- trajectories
- classes and methods for trajectory data
- TraMineR
- Trajectory Miner: a Toolbox for Exploring and Rendering Sequences
- TraMineRextras
- TraMineR Extension
- travelr
- Functions for Travel Demand Modeling
- TreeHotspots
- Hotspot Detection using Classification Trees
- triangle
- Provides the standard distribution functions for the triangle distribution
- trim
- Tree methods for classification of imbalanced data
- tripEstimation
- Metropolis sampler and supporting functions for estimating animal movement from archival tags and satellite fixes
- TrueFX
- R API to TrueFX
- TruncatedDistributions
- Use Truncated Distribution functions
- TSAgg
- Time series Aggregation
- TScompare
- 'TSdbi' Database Comparison
- tscount
- Analysis of Count Time Series
- TSdbi
- Time Series Database Interface
- TSfame
- 'TSdbi' Extensions for Fame
- TSjson
- 'TSdbi' Extension to Import Time Series from Web Sources via JSON
- tsk
- Trimmed Spearman-Karber Method
- TSmisc
- 'TSdbi' Extensions to Wrap Miscellaneous Data Sources
- TSmisc2
- Additional 'TSdbi' Extensions to Wrap Miscellaneous Data Sources
- TSMySQL
- 'TSdbi' Extensions for 'MySQL'
- TSPostgreSQL
- 'TSdbi' Extensions for 'PostgreSQL'
- TSsdmx
- 'TSdbi' Extension to Connect with 'SDMX'
- TSSP
- Two-Stage Stochastic Programs
- TSsql
- Generic SQL Helper Functions for 'TSdbi' SQL Plugins
- tstPkg1
- Test Package 1
- tstPkg2
- Test Package 2
- tth
- TeX to HTML/MathML Translators TtH/TtM
- TTR
- Technical Trading Rules
- tuneR
- Analysis of music and speech
- twang
- Toolkit for Weighting and Analysis of Nonequivalent Groups
- twConfig
- Cascading configuration files
- twDEMC
- parallel DEMC
- twinlm
- Linear models for twin data
- twMisc
- Utility functions of tw
- twMiscRgl
- tw 3D utility functions
- twModMeta
- Support for array based state variables in ODE.
- twNlme
- Standard errors for basic nlme and gnls model predictions
- twopiece
- The family of two piece distributions
- twsInstrument
- Improves ease of use of IBrokers and FinancialInstrument
- twSnowfall
- tw snowfall extension
- ucminf
- General-purpose unconstrained non-linear optimization
- Umpire
- Umpire Package
- UncertWebRTools
- collection of useful R functions in the UncertWeb
- uniaxialOptics
- Modelling multilayer anisotropic stacks
- unknownR
- You didn't know you didn't know?
- urca
- Unit Root and Cointegration Tests for Time Series Data
- uroot
- Unit Root Tests and Graphics for Seasonal Time Series
- UScensus2000
- US Census 2000 Suite of R Packages
- UScensus2000blkgrp
- US Census 2000 Block Group Shapefiles and Additional Demographic Data
- UScensus2000cdp
- US Census 2000 Designated Places Shapefiles and Additional Demographic Data
- UScensus2000tract
- US Census 2000 Tract Level Shapefiles and Additional Demographic Data
- UScensus2010
- US Census 2010 Suite of R Packages
- UScensus2010blkgrp
- US Census 2010 Block Group Level Shapefiles and Additional Demographic Data
- UScensus2010cdp
- US Census 2010 Blockgroup Level Shapefiles and Additional Demographic Data
- UScensus2010county
- US Census 2010 County Level Shapefiles and Additional Demographic Data
- UScensus2010tract
- US Census 2010 Tract Level Shapefiles and Additional Demographic Data
- usdm
- Uncertainty analysis for species distribution models
- USlobbying
- Documents Filed under the US Lobbying Disclosure Act
- utilsag
- Datasets and utility functions.
- varComp
- Variance Component Models
- VarianceGamma
- The Variance Gamma Distribution
- VarSelLCM
- Variable Selection for Model-Based Clustering of Continuous, Count, Categorical or Mixed-Type Data Set with Missing Values
- vbv
- Time series decomposition with VBV (Verallgemeinertes Berliner Verfahren)
- vcdExtra
- 'vcd' Extensions and Additions
- vcrpart
- Tree-Based Varying Coefficient Regression for Generalized Linear and Ordinal Mixed Models
- Vdgraph
- Variance dispersion graphs and Fraction of design space plots for response surface designs
- vectis
- Modified Statistical Tools
- vegan
- Community Ecology Package
- Vennerable
- Venn and Euler area-proportional diagrams
- vGWAS
- Variance Heterogeneity Genome-Wide Association Study
- virta
- Virtual tables for RSQLite
- VirtualCom
- Assembling virtual plant communities
- VisCount
- R package for training and evaluating visual count estimates
- VPA
- Variant Pattern Analyzer for next-generation sequencing study
- vsa
- Vector Symbol Architectures for AI & CogSci
- VwGHat
- Mining Austrian administrative court rulings
- WaterMap
- Mapping evapo-transpiration from satellite images.
- WaveSeqR
- A Wavelet-based Method for ChIP-Seq peak calling
- waveslim
- Basic Wavelet Routines for One-, Two- and Three-dimensional Signal Processing
- waveTiling
- Wavelet-Based Models for Tiling Array Transcriptome Analysis
- waveTilingData
- waveTiling Example Data
- weather
- Weather data manipulation
- weatherData
- obtain daily weather data
- webmaps
- Create HTML Web maps
- WeightedCluster
- Clustering of Weighted Data
- weimea
- Weighted mean of species attributes
- WIDataRipper
- WaterInfo Data Ripper
- wls
- Iteratively Re-Weighted Least Squares
- WMCapacity
- GUI implementing Bayesian working memory models
- wmtsa
- Wavelet Methods for Time Series Analysis
- word.alignment
- Finding Word Alignment Using IBM model 1 for a Given Parallel Corpus and Its Evaluation
- wordcloud
- Word Clouds
- wordspace
- Distributional Semantic Models in R
- WriteXLS
- Cross-platform Perl based R function to create Excel 2003 (XLS) files
- WRS
- A package of R.R. Wilcox' robust statistics functions
- WRS2
- A Collection of Robust Statistical Methods
- wtJonckheere
- Non-parametric Jonckheere-Terpstra trend test on weighted data
- WWGbook
- Datasets and scripts for WWGbook.
- XGR
- Exploring Genomic Relations for Precision Interpretation Through Enrichment, Similarity, Network and Annotation Analysis
- xgrid
- Access Apple Xgrid using R
- xkcd
- Plotting ggplot2 graphics in a XKCD style
- xmetric
- X-METRIC Multi-Echelon Techniques for Replaceable Inventory Control
- XMLRPC
- Remote Procedure Call (RPC) via XML in R
- xmlschemaHelper
- Tools for reading XML Schema within R
- xterm256
- Support for xterm256 escape sequences
- Xtratsfa
- Time Series Factor Analysis Extra Functions
- xts
- eXtensible Time Series
- xtsExtra
- Supplementary Functionality for xts
- xVA
- Calculates Credit Risk Valuation Adjustments
- yags
- Yet Another GEE Solver
- yaImpute
- Nearest Neighbor Observation Imputation and Evaluation Tools
- YaleToolkit
- Data exploration tools from Yale University.
- yang
- Microarray GDS1887 DATA
- yapomif
- Yet another package of misc functions
- yarr
- Extensible Framework for R Reporting
- yasomi
- Yet Another Self Organising Map Implementation
- YieldCurve
- Modelling and estimation of the yield curve
- YplantQMC
- Plant architectural analysis with Yplant and QuasiMC.
- yuima
- The YUIMA Project Package for SDEs
- yuimaGUI
- A Graphical User Interface for the Yuima Package
- Zar5
- Data sets from Biostatistical Analysis
- zenplots
- Zigzag Expanded Navigation Plots
- ziLRhClust
- Hierarchical Clustering Based on Log-Likelihood Ratio for Zero-Inflated Data
- zipfR
- Statistical models for word frequency distributions
- zoo
- S3 Infrastructure for Regular and Irregular Time Series (Z's Ordered Observations)
- zooExtra
- Supplementary Functionality for zoo Time Series