All R packages

Found 1894 packages.

Automated Affymetrix Array Analysis Core Package
Automated Affymetrix Array Analysis Reporting Package
The Analysis of Biological Data
Combine Multidimensional Arrays
Data Processing and Analysis for the Alberta Biodiversity Monitoring Institute
Data Processing and Analysis for the Alberta Biodiversity Monitoring Institute
Abernethy Reliability Methods
Maximum Likelihood Estimation Models with Bias Adjustment Options for Reliability Analysis
Output functions for the Abernethy Reliability Methods package (abrem), including plotting.
Linear Rank Regression Models with Pivotal Monte Carlo Methods for Reliability Analysis
Functions for Processing Minute-to-Minute Accelerometer Data
A package for controlling false positives rate in GWAS by estimating local inflation factor
Estimating Dynamic Heritability and Twin Model Comparison
Annotated Copy-Number Regions
Discrete and Global Optimization Routines
Analysis of Ecological Data : Exploratory and Euclidean Methods in Environmental Sciences
'ade4' Tcl/Tk Graphical User Interface
An S4 Lattice-Based Package for the Representation of Multivariate Data
adephylo: exploratory analyses for the phylogenetic comparative method.
Multivariate Multiscale Spatial Analysis
Anderson-Darling GoF test
SECR models with supplementary location information
Object Oriented Advanced Clustering
Fuzzy Clustering (Ensembling and Optimization)
Tools to construct Asymmetric eigenvector maps (AEM) spatial variables
Analysis of Factorial Experiments
Analysis of Factorial Experiments
Analysis of AFLP data
Calculate Agreement or Consensus in Ordered Rating Scales
Data sets and examples for the book "Applied Longitudinal Analysis"
Constrained nonlinear optimization
Apache Log File Analysis
Robust Cronbach's alpha with missing and non-normal data
Plot array lists
alternating logistic regression
Data to accompany Applied Linear Regression 3rd edition
Data to accompany Applied Linear Regression 4th edition
Analyzing Moving Boundaries Using R
AMBUR-HVA
Analyze time-coded animal behavior data
Feedforward Artificial Neural Network optimized by Genetic Algorithm
Version of ant specific to R
A wrapper to the apicultuR set of APIs for NLP in Spanish
Functions and Data Sets for 'Applied Predictive Modeling'
Applied Psychometrics With R
Algorithms for Quantitative Pedology
Interface methods to use with an ActiveQuant Master Server
Integrated Development Toolbox for Aquatic Chemical Model Generation
Archetypal Analysis
Activated Region Fitting, fMRI data analysis (3D).
Activated Region Fitting, fMRI data analysis.
Data Analysis Using Regression and Multilevel/Hierarchical Models
A probe-level data file format used by aroma.affymetrix [DEPRECATED]
Methods for accessing online The Cancer Genome Atlas (TCGA) data
Array factor for 2D periodic arrays
Convenience Functions for Arrays
Mining NB-Frequent Itemsets and NB-Precise Rules
Visualizing Association Rules and Frequent Itemsets
arulesViz - Visualizing Association Rules and Frequent Itemsets
Model-output formatter for sociological research.
A General Framework for Multivariate Analysis with Optimal Scaling
An R package for subset-based association analysis of heterogeneous traits and subtypes
Advanced statistics using R
A GTK GUI for teaching basic concepts in statistical inference, and doing elementary bayesian tests.
weather and climate analysis
Atools
Automatic Tracing and Display of Changes to Row Count
Hydrometeorological interpolation
A package for doing things with words
Testing Autocorrelation through bootstrap and surrogate methods
This packages allow users to ``background'' computations.
A package for identifying sample mixups in combined expression and genotyping studies.
Bayesian Additive Models for Location Scale and Shape (and Beyond)
Projection of cancer incidence and mortality data using Bayesian APC models fitted with INLA
Barcode distribution plots
Multivariate Methods in Ecology with R: Basic Algorithms
Base 64 encoder/decoder
Infrastructure for Computing with Basis Functions
Bayesian AuTomated Metabolite Analyser for NMR spectra
Bayesian Biclustering with Subject and Variable Importance
Procedure for evaluate marginal likelihood for quantitative STR DNA mixture bayesian models
Computation of Bayes factors for common designs
Compute Bayes factors using the GIBI interface
Bayesian Regression in R
Computation of Bayes factors for interrupted time-series designs
R Package Distribution of the BayesX C++ Development Sources
Solving and Optimizing Large-Scale Nonlinear Systems
Tools for general maximum likelihood estimation
Diagnostics Plots for Bicluster Data
Bayesian composition estimator: estimating sample (taxonomic) composition from biomarker data
Bayesian Hierarchical Clustering Using Spike and Slab Models
A Package for Transparent Artificial Data Generation
Big Data Ready
Routines for Block Diagonal Symmetric matrices
Bertin matrix display
Bessel Functions Computations and Approximations
Partitioning Beta Diversity into Turnover and Nestedness Components
Beta Regression
Bayesian Factor Analysis
Breaks For Additive Season and Trend
Bayesian Fractional Polynomials
Bayesian Generalized Linear Regression
Utilities for Bayesian Generalized Linear Regression
The Boost C++ Libraries
bibtex parser
BiCluster Algorithms
Ranking of biclusters using another data source
BLAS routines for native R matrices and big.matrix objects.
A library of utilities for big.matrix objects of package bigmemory.
Procedure for doing inference of one-way Linear Mixed Effects models.
Manage massive matrices with shared memory and memory-mapped files
A shared resource interface for Bigmemory Project packages
Estimation of models with limited dependent variables
Generalized Ridge Regression (with special advantage for p >> n cases)
The Bimodality Index
Binomial Confidence Intervals For Several Parameterizations
Performing diagnostics on binomial regression models
Bioclim Variables Calculator
Simulation of Biomass Crops
Ensemble platform for species distribution modeling
Ensemble Platform for Species Distribution Modeling
Misc Tools of the Department of Biostatistics, EBPI, University of Zurich
Interactive Biplots in R
A Class for Vectors of 1-Bit Booleans
A S3 Class for Vectors of 64bit Integers
Bias-Variance Analysis of the Misclassification Rate
Conduct univariate and bivariate wavelet analyses
Black-Litterman and copula-opinion pooling frameworks
Broken Line Model Regression
parallel DEMC with several parameter blocks
An R package for generalized and classical blockmodeling of valued networks
Block Rearrangement Algorithm
Randomization for block random clinical trials
Tools for Transaction-Oriented Trading Systems Development
Bayesian Linear Regression
Recurrent events with BLUPs
Mediation analysis with missing data using bootstrap
Bayesian Models for Rare Variant Association Analysis
Interface to the boilerpipe Java library by Christian Kohlschutter (http://code.google.com/p/boilerpipe/)
BOM data getter
The Boost C++ Libraries
Function to find nonparametric BCa intervals
Derive Robust Feature Sets for Two or Multiclass Classification Problems
Model-based clustering of multivariate ordinal data relying on a stochastic binary search algorithm
Bounds for causal and sufficient-cause interactions
Back-Projected Kernel Density Estimation
Basic functions for panel data analysis
Cumulative incidence models for twin data
Breakpoint detection error
Templating Framework for Report Generation
Bias reduction in binomial-response generalized linear models.
Brier score decomposition of probabilistic forecasts for binary events
Temporal Exponential Random Graph Models by Bootstrapped Pseudolikelihood
Utilities for Simple Back Testing of Trading Strategies
Collection of BUGS examples
Solvers for Boundary Value Problems of Differential Equations
Integrative Bayesian variable selection with flexible priors
Extended Inference for Lasso and Elastic-Net Regularized Cox and Generalized Linear Models
Infering large-scale gene networks with C3NET
C5.0 Decision Trees and Rule-Based Models
Simple, Multiple and Joint Correspondence Analysis
Generate ICD10, Read and OPCS codelists
Data Management Tools for CALIBER Datasets
Extract drug dose from unstructured dosage text
R interface to the Freetext Matching Algorithm
Multiple imputation using MICE and Random Forest
Statistical models and tools for assay calibration
Finite Mixture Models and Meta-Analysis Tools - Based on C.A.MAN
Provides a measure of the average connectedness among as set of candidate genes and a network-specific distribution of the connectedness of random gene pairs for an arbitrary network of pair wise interactions.
Visualizing Generalized Canonical Discriminant and Canonical Correlation Analysis
Candlestick Pattern Recognition
Import, manipulate and analyze data from the Massachusetts CANS tool
Companion to Applied Regression
Identification of Cardinal Dates in Ecological Time Series
Classification and Regression Training
LaTeX Classes for the caret Package
Cellular Automata for Spatial Pressure in R
Formal Modeling for Psychology
Claudia's collection of miscellaneous functions
Collection of "combined" models: PCA-LDA, PLS-LDA, etc.
Cone Constrained Convex Problems
Conditional Correlation GARCH Models
Reading and Writing Constant DataBases
cdtRefficient
cdtRggplot2
cdtRintroduction
cdtRmodelling
cdtRprogramming
Censored Regression (Tobit) Models
CENTIPEDE learns a DNaseI footprint of a transcription factor and predicts its binding sites
Canadian Forest Fire Danger Rating System
Compensatory Fuzzy Logic
Parallel genomic evaluations
Segmentation methods for array CGH analysis
Various functions useful in computational genetics, e.g. GWAS.
CHi-squared Automated Interaction Detection
An example dataset for use with the charm package
Chemical Thermodynamics and Activity Diagrams
What the package does (short line)
Basic tools for chemoinformatics
Circular Statistics
CITation ANalysis toolpack
Computation, comparison and sensitivity analysis of composite indicators of performance
An unsupervised non hierarchical clustering algorithm handling biological data
Clustering modal multi valued symbolic data
Classes and Methods for "Class Comparison" Problems on Microarrays
Classes and Methods for "Class Discovery" with Microarrays or Proteomics
Choose Univariate Class Intervals
Classes and Methods for "Class Prediction" with Microarrays or Proteomics
Classifies RNA Structure Change in Chemical Mapping Data
Crowdsourcing climate-smart agriculture
R functions for working with station and gridded climate data.
Statistical Methods for Climate Sciences
Clustering Discrete Distributions
This package performs clustering for categorical dataset.
Fast agglomerative convex clustering, original Rcpp implementation
Covariance Matrix Adapting Evolutionary Strategy
cMonkey integrated biclustering algorithm
Multistage Competing Risks Analysis for Web data
Fit Capture-Mark-Recapture models in continuous time.
Methods for reading CNAG files
same Chromosome N-loci F2 frequencies
same Chromosome N-loci F2 frequencies, with IBD tracing
A pedagogical tool to teach the basics of coalescent theory
COnstrained B-Splines (Sparse Matrix Based)
Constrained B-splines -- outdated 1999 version
Co-correspondence analysis methods
Management of Survey Data
Robust Cronbach's alpha with missing and non-normal data
Consensus Optimization Fuzzy Clustering
Simulation and inferenc for COGARCH(1,1) processes
Portfolio selection with Multivariate COGARCH(p,q) models
Conditional Inference Procedures in a Permutation Test Framework
Color Science Methods and Data
Color Space Manipulation
Data-driven colour scheme mappers
Command pattern in R
Community Ecology Analyses
Useful libraries for building a Java based GUI under R
This package performs clustering for categorical dataset by using a conditional modes mixture model
Composite-Likelihood Based Analysis of Random Fields
Conformal mapping from a polygon to a disk
Algorithms for Fitting Circles, Ellipses and Conics Based on the Work by Prof. Nikolai Chernov
Defines some physical constants and functions commonly used in optics, plasmonics.
A collection of contrast methods
Convex Optimization in R
Multivariate Dependence with Copulas
Collection of Rudimentary Bioinformatics Tools
OPTICS Cordillera
Analysis of binary character evolution
Statistics and Data Sets for Corpus Frequency Data
Nonparametrics with Clustered Binary and Multinomial Data
An R package for cosegregation analysis and simulating pedigrees
Co-Expression Analysis of Sequencing Data
Count Data Regression
Boosting Flexible Cox Models (with Time-Varying Effects)
R-script suite for automated processing of proteomic peptide lists
cremo: Comparative REndering of Model Outputs
Conditional Random Fields
Graphics Cropping Tool
Modelling crop trial data
simulate crop growth
Classes and methods for cross validation of "class prediction" with microarrays or proteomics
Classes and Methods for Cross Validation of "Class Prediction" with Microarrays or Proteomics
Classification Rules
Connectivity Scores with Factor Analysis
CShapes Dataset and Utilities
Closed Skew-Normal Distribution
Accessing Csound functionality through R
csSAM - cell-specific Significance Analysis of Microarrays
ctglm
Latent Continuous Time Markov Chains
Conditional Transformation Models
Modeling Animal Movement with Continuous-Time Discrete-Space Markov Chains
Modeling Animal Movement with Continuous-Time Discrete-Space Markov Chains
Conditional Transformation Models
CRAN Task Views
Rule- and Instance-Based Regression Modeling
Functions for statistical analysis and plotting of image properties
Dynamic Systems Estimation - Curvature Extensions
Cusp-Catastrophe Model Fitting Using Maximum Likelihood
Color Vision Deficiencies
Genome-wide association analysis based on predictive ability
Discrete Cramer von Mises Goodness-of-Fit Tests
Cardiovascular Risk Calculator
Design and Analysis of Experiments with R
Graphical Analysis of Structural Causal Models
Functions and models related to dairy production
Dave Armstrong's Miscellaneous Functions
Proteomics data analysis tool
Handling survey data in R. (official release)
Extension of data.frame
Functions for handling dates
Analyzing Dichotomous Choice Contingent Valuation Data
A Package for Medical Image Analysis
A Package for Medical Image Analysis (S4 implementation)
Analysis of Ontologies and Protein Domain Annotations
Methods for reading dChip files
Data Cloning and MCMC Tools for Maximum Likelihood Methods
Functions for the Detection of Spatial Clusters of Diseases
Model-based detection of disease clusters
Dynamic Deterministic Effects Propagation Networks: Infer signalling networks for timecourse RPPA data.
DDI with R
Assess how spatial roadkill patterns change with temporal sampling scheme
Functions implementing MLE,its bias reduction for small samples and related issues
printf-style debugging
Various functions to quantify and decompose health inequalities
Deconvolution by Weighted Kernels
Update of matrix decompositions
Tools for aggregating scale items
Factorial ANOVA for Deducer
Reliability and factor analysis plugin
PSY220 Deducer Plug-In
Converts data frames from wide to long and long to wide formats
Rich Output Display for Deducer
Deducer for spatial data analysis
Deducer GUI for Text Data
Exploiting Normal Contamination to Infer Copy Number from Deep Sequencing
Deep Learning Neural Network Models (RNN, CNN, etc) in NLP
Compute the design effect for correlated binary data
delftfews R extensions
Deconvolution Models for Mixed Transcriptomes from Heterogeneous Tumor Samples
'DeMix' Sample Data
demoniche - spatial population dynamics
Decipher Barr & Stroud FP-15 from STX Files
Parameter estimates (and real-time prediction) of a single dengue outbreak
Parameter Estimates and Real-Time Prediction of a Single Dengue Outbreak
Differential Evolution Optimization in Pure R
Dependent Mixture Models
Dependent Mixture Models - Hidden Markov Models of GLMs and Other Distributions in S4
depthproc
Statistical Depth Functions for Multivariate Analysis
Desirabiliy Function Optimization and Ranking
Desirability functions
Solvers for Initial Value Problems of Differential Equations ('ODE', 'DAE', 'DDE')
Analyzing Wildlife Data with Detection Error
Test Set for Differential Equations
A computer program to detect markers responding to selection
Access Data Tables in a SQLite Data Base as Pseudo-Dataframes
Access Data Tables in an RODBC Data Base as Pseudo-Dataframes
Derivative-free Optimization
Discrete Goodness-of-Fit Tests
Diagnostic test accuracy evaluation for health professionals
Functions for Visualising Simple Graphs (Networks), Plotting Flow Diagrams
Color Schemes for Dichromats
Import medical imaging data using the DICOM Standard
R companion to "Curve and Surface Fitting with Splines"
Functions from the book Solving Differential Equations in R
Create cryptographic hash digests of R objects
digitize : a plot digitizer in R
Direct labels for multicolor plots in lattice or ggplot2
Dirichlet and Generalized Dirichlet Distribution functions
soil science related functions
Modelling Spatial Variation in Disease Risk for Areal Data
Functions to compliment diseasemapping
Species Distribution Modeling
Object Oriented Implementation of Distributions
Documentation for 'distr' Family of R Packages
S4 Classes for Elliptically Contoured Distributions
Extensions of Package 'distr'
Distribution Utilities
Object Oriented Implementation of Probability Models
Distribution Classes for Distributions from Rmetrics
Simulation Classes Based on Package 'distr'
Extensions of Package 'distr' for Teaching Stochastics/Statistics in Secondary School
Estimation and Testing Classes Based on Package 'distr'
Trees and Forests for Distributional Regression
Dive analysis and calibration
Bayesian and Likelihood Analysis of Dynamic Linear Models
Dynamic Linear Regression Model
Dependency Modeling Toolkit
A procedure for large scale contamination search
Integrative Analysis of Omics Data in Terms of Network, Evolution and Ontology
Automatic Documentation for R packages
Foreach Parallel Adaptor for 'parallel'
Foreach Parallel Adaptor for the 'parallel' Package
Generic Reproducible Parallel Backend for foreach Loops
Foreach parallel adaptor for the revoIPC package
Foreach Parallel Adaptor for the 'snow' Package
Functions Ported from 'MMR2' Toolbox Offered in Kevin Dowd's Book Measuring Market Risk
Downscaling Species Occupancy
Differential Protein Expression Analysis using Quantitative Mass Spectrometry Data (dpeaqms)
Dendrochronology Program Library in R
Dirichlet Process Mixture model simulation for clustering and image segmentation
The `dpqrcox' package provides d/p/q/r functions of Coxian distributions.
Methods for Dimension Reduction for Regression
Visualising R syntax through graphics
DiffeRential Evolution Adaptive Metropolis
Tools for Drought Modeling and Assessment
Discretization-Based Direct Random Sample Generation
Dynamic Systems Estimation (Time Series Package)
DSE (unbundled transition package).
DSE (unbundled transition package).
Functions and datasets for the book "Data Science in R"
Distributed Storage and List
Dynamic time warping algorithms
A dummy package to ask R-Forge to install packages that I need
DWD implementation based on A IPM SOCP solver
Methods for Estimating Dynamic Treatment Regimes
Misc Functions of the Department of Statistics, Probability Theory Group (Formerly: E1071), TU Wien
Early Warning Signals Toolbox for Detecting Critical Transitions in Timeseries
Wrapper to the Emd-L1 library by Haibin Ling and Kazunori Okada
Efficient Approximate Bayesian Computation Sampling Schemes
Generic S3 Classes for Simple Database Interfaces
Simple Database Interface for SQLite, MySQL and MS Access
Simple database interface for RODBC Excel.
Simple Database Interface for MySQL
eat
eatData
eatDesign
eatDev
eatGet
eatModel
Prepare Data for IRT Analyses
eatRep
eatRest
eatTools
Estimate National Trends in International Large-Scale Assessments
DUMMY DUMMY DUMMY
EBI Metagenomics Portal
Exact Bayesian Segmentation
Data Sets for Econometrics
Functions for Ecdat
"A Practical Guide to Ecological Modelling - Using R as a Simulation Platform"
Ecological Modelling Toolbox
Ecologically-informed phylodiversity metrics
Methods for Ecotoxicology
A set of R resources to teach landscape ecology, landscape analysis and spatial statistics
expression density diagnostics
Performs Extended Digital PCR Analysis
Analytical Package for Analysing Education Trials
Analytical Package for Analysing Education Trials
Effect Displays for Linear, Generalized Linear, and Other Models
The causal effects for a causal loglinear model
Ecological Inference with individual and aggregate data
Electricity market models
Electronics
Entropy-based Local indicator of Spatial Association
What the package does (short line)
Fit (logistic) LASSO when there is missing data in the predictors
Tools for Environmental and Ecological Survey Design
Data sets from "Introductory Statistics for Engineering Experimentation"
A package dedicated to questionnaires
Resampling bias correction for large initial condition ensembles
A Package for Statistical Analysis in Epidemiology
DNA methylation and SNP calling for bisulfite sequencing data
EpiNetics
EpiNeticSeq
Generalized Ridge Regression for Analysis of Interaction Effects
Predict Binding Between Peptides and MHC Molecules
numerical solution of Ericsken-Leslie equations for 1D liquid crystal cells
Extended Rasch Modeling
Event-related potentials (ERP) analysis, graphics and utility functions
Ecological Specificity Measures
Wrappers for the Geospatial Data Abstraction Library (GDAL) Utilities
Estimate of Stromal and Immune Cells in Malignant Tumor Tissues from Expression Data
Analysis of Eye-tracker data
Package for intepretation of quantitative DNA mixtures
Calculations for DNA mixtures
Calculations for DNA mixtures, only R code
Store and manipulate event data
Event Trees for Hazard and Risk Analysis
Extreme Values in R
Evolutionary Learning of Globally Optimal Trees
Edge-Weighted Closeness
ExactSampling: risk evaluation using exact resampling methods for the k Nearest Neighbor algorithm.
Automatic Generation of Exams in R
Execute scripts in exec directory of packages
Exact Liebermann/Reshnikov and Bruhn-Suhr/Krumbholz plans
Computation of implied expected returns
Modelling of expectiles
Breiman and Cutler's random forests for classification and regression
Extremal Dependence Models
Modeling Human Response Times and Accuracy using the EZ/EZ2 Diffusion Model
Autoregressive Conditional Duration Models in R
Factor Analytics
Functions for performing factor analysis on financial time series
factorplot
Generate fake geographies
Rmetrics - Modelling ARMA Time Series Processes
Rmetrics - EBM and Asian Option Valuation
Rmetrics - Analysing and Modelling Financial Assets
VARIANCE COMPONENT BASED MULTI-MARKER ASSOCIATION TEST USING FAMILY AND UNRELATED DATA
Data sets and utilities for Foundations and Applications of Statistics by R Pruim
Fault Trees for Risk and Reliability Analysis
Interaction between FaultTree on R and SCRAM
Rmetrics - Markets and Basic Statistics
Rmetrics - Pricing and Evaluating Bonds
fCertificates - Basics of Certificates and Structured Products Valuation
Rmetrics - Bivariate Dependence Structures with Copulae
Measuring functional diversity (FD) from multiple traits, and other tools for functional ecology
Functional Data Analysis
Boosting Functional Regression Models
Methods for Multivariate or Functional Data
Economic and Financial Data Sets
Rmetrics - Pricing and Evaluating Exotic Option
fExpressCertificates - Structured Products Valuation for ExpressCertificates/Autocallables
Rmetrics - Modelling Extreme Events in Finance
Freedom from Disease
Fast- and Frugal Tree Analysis
Rmetrics - Modelling Autoregressive Conditional Heteroskedasticity
Floating Grid Method
Floating Grid Permutation Technique
Rmetrics - Importing Economic and Financial Data
Financial Instrument Model Infrastructure for R
Methods for estimating covariance matrices
Functions to operate on binary fingerprint data
Companion to Tsay (2005) Analysis of Financial Time Series
FIRMAGene - differential splicing for Affymetrix Gene 1.0 ST
Fisheye and Hyperbolic-space-alike Interactive Visualization Tools in R
Dataset of Measurements of Fish Species at Kirkkojarvi Lake, Finland
Help to Fit of a Parametric Distribution to Non-Censored or Censored Data
Fitting mixture of skew t distribution
fit.models
General solvers for the general Black-Scholes (Fokker Planck) partial differential equation (PDE) in a multi-dimensional setting with main application in finance (option pricing).
Fast Kalman Filter
Generic classes and methods for stock assessment models
Bio-Economic Impact Assessment of Management strategies using FLR
Core package of FLR, fisheries modelling in R.
Exploratory Data Analysis for FLR
Example datasets for FLR manuals and tutorials
Flexible Bayesian Inference
Flexible parametric survival models
Classify Night Flight Calls Based on Acoustic Measurements
Process Synchronization Using File Locks
eXtended Survivor Analysis for FLR
R Package for Estimation, Simulation and Forecasting of a Univariate Markov Switching Model
A Flexible Modelling Environment for Inverse Modelling, Sensitivity, Identifiability and Monte Carlo Analysis
Rmetrics - Analysing and Modeling Multivariate Financial Return Distributions
Rmetrics - Nonlinear and Chaotic Time Series Modelling
Generating food webs
Rmetrics - Pricing and Evaluating Basic Options
Forecasting with Artificial Intelligence
Provides Foreach Looping Construct for R
Quantification and evaluation tools for forensic document examiners
Statistical tools for the interpretation of forensic DNA mixtures
Visualizes Random Forests with Feature Contributions
(Legacy version 1.5)Visualizes Random Forests with Feature Contributions
Extended Model Formulas
Miscelaneous tools to handle formulas.
R Fortunes
Segmentation using Optimal Partitioning and Function Pruning
Rmetrics - Portfolio Selection and Optimization
Rmetrics - Portfolio Backtesting
Fractal Time Series Modeling and Analysis
Financial Risk Modelling and Portfolio Optimisation with R
Cramer's Phi Analysis of Freesort Data
Rmetrics - Regression Based Decision and Prediction
Frequency Domain Analysis for Multivariate Time Series
Stochastic Frontier Analysis
FRS Statistics Group R Library
Selecting attributes
A package to search functionally similar genes
Rmetrics - Trading and Rebalancing Financial Instruments
Fault Trees and Event Trees for Risk and Reliability Analysis
Activated Region Fitting, fMRI data analysis (3D), additional dataset.
Use R for Fun
OBSOLETE: Run tests, where possible, on named optimization problem file.
A package for functional data clustering.
Functional Regression Estimation
Curry, Compose, and other higher-order functions
Rmetrics - Modelling Trends and Unit Roots
Functional traits, phylogenies, communities, simulations
Framework for Understanding Structural Errors (FUSE)
Combining Classifiers
Fused-ANOVA
Fused-ANOVA
Felix's favorite functions
Tools to deal with fuzzy numbers in R
Fuzzy similarity in species distributions
Fire Weather Index System and Fire Behaviour Prediction System Calculations
Exchange Rate Regime Analysis
Grain-size Statistics and Description of Sediment
graph for networks
Genome Alteration Detection Algorithm (GADA)
Boosting Methods for GAMLSS
Playing games using a NWS Server
Fitting an interval response variable using gamlss.family distributions
GAMLSS Data.
Demos for GAMLSS
Distributions to be used for GAMLSS modelling.
A GAMLSS add on package for fitting mixture distributions
Fitting non linear parametric GAMLSS models
Generating and fitting truncated (gamlss.family) distributions
Package for intepretation of quantitative DNA mixtures
Global Association of Risk Professionals: Financial Risk Manager
Parse Eye-Tracking Data into Fixations
Census populations and polygons
Growth curve modeling diagnostics
Wrappers for the Geospatial Data Abstraction Library (GDAL) Utilities
Various R Programming Tools for Data Manipulation
Distances and Routes on Geographical Grids
Create Generalised Dissimilarity Models
Create Generalised Dissimilarity Models
Genome-Wide Differential Splicing Detection
R Interface to CoreArray Genomic Data Structure (GDS) files
gee in bounded memory, data from disk etc.
Data Used by the GenABEL Examples and Test Functions
Classes and Methods to Use Genetic Algorithms for Feature Selection
Belief Propagation in Genotype-Phenotype Networks
The Generalized Hyperbolic Distribution
The Generalized Lambda Distribution
Plot Publication-Grade Gene and Genome Maps
IRRI Geography Lab - General Utilities
Draw and Annotate Maps, Especially Charts of the North Atlantic
Datasets and helper functions for commonly required values in geochemistry.
Analysis and Modeling for Geostatistical Count Data
Extras for the 'geo' package
Mesh Generation and Surface Tesselation
Interface to www.geonames.org web service
An extension of the geoR package.
Data and functions for Geotechnical Risk Assessment
Robust Geostatistical Analysis of Spatial Data
Spherical Trigonometry
Geostatistical Analysis and Design of Optimal Spatial Sampling Networks
Geostatistical Modelling with Likelihood and Bayes
Manipulation of geographic vector (points, lines, polygons) data
Utility package for creating or updating a local user-defined subsets of the global MODIS grid data online archive. Pre-processing functionalities for MODIS grid data using MODIS Reporjection Tool (MRT)
C-like getopt behavior.
Semivariogram and Exploratory Spatial Analysis of Genetic Data
Using ggplot2 in FLR
A package on the generalized hyperbolic distribution and its special cases
What the package does (short line)
Gifi Methods for Categorical Multivariate Analysis
General Linear Ballistic Accumulator Models
An Asymmetry-Steepness Parameterization of the Generalized Lambda Distribution.
Bayesian Fractional Polynomials for GLMs
Generalized Linear Mixed Model Trees
Generalized Linear Mixed Models using 'AD Model Builder'
Generalised Linear Mixed Models with BUGS and JAGS
Generalized Linear Mixed Models with Lasso
Generalized Linear Models Extended
Testing the additional predictive value of high-dimensional data
Fitting and Testing Generalized Logistic Distributions
Naive General Location Model
Global Optimization Wrapper to Call a Variety of Solvers
glucpack
Graph Based Multiple Comparison Procedures
Graphical User Interface for Fitting Kinetic Models to Chemical Degradation Data
Generalized Method of Moments and Generalized Empirical Likelihood
Generalized Multilevel Permutation Models
Generalized Non-Negative Matrix Factorization Based on Renyi Divergence
Model-diagnostics based on cumulative residuals
Generalized Orthogonal GARCH (GO-GARCH) models
gpairs: The Generalized Pairs Plot
GPA Factor Rotation
Various R Programming Tools for Plotting Data
Determine knots and weights for Gaussian quadrature rules
Graphical R$^2$
Random Forest functions for the Census of Marine Life synthesis project.
Grains of connectivity and minimum planar graph modelling of landscape connectivity (Windows only)
Quality Control for Graphics in R
What the package does (short line)
Gradient Analysis of Vegetation
A package for graphical modelling in R
Inference in Graphical Gaussian Models with Edge and Vertex Symmetries
Fitting Chain Graph Models
Land Surface Phenology and Trend Analysis
Greg's Miscellaneous Functions
Grho parameters for asymptotic regression
Debugging 'grid' Graphics
functions in Grid graphics
A game framework for R
Drawing Graphs with 'grid'
Export 'grid' Graphics as SVG
Importing Vector Graphics
Synthetic Expression Data for Gene Regulatory Network Inference
Spatially balanced sampling based on GRTS
Group Sequential Design
GSEA rotation
Global Soil Information Facilities
Generalized Semi-Linear Canonical Correlation Analysis
Smoothing tools
obtain daily weather data
Spatial and Spatio-Temporal Geostatistical Modelling, Prediction and Simulation
Grid-based symbols
Maps, data and methods related to Guerry (1833) "Moral Statistics of France"
Fast Calculation of the Likelihood of a Stochastic Survival Model
Vector Error Correction Model (VECM), VECM with exogenous I(1) variables, Global VAR (GVAR)
GWAS Quality Control
gWidgets API for building toolkit-independent, interactive GUIs
port of RStudio's manipulate package using gWidgets
Toolkit implementation of gWidgets for rJava
Toolkit implementation of gWidgets for tcltk package
Toolkit implementation of the gWidgets API for use with web pages
Toolkit implementation of the gWidgets API for use with web pages
HaarSeg
Utilities for using R scripts in Hadoop streaming
Hafro Assessment Toolbox
Modelling of haplo-effects for survival data, including competing risks. Effect of haplomatch for BMT studies.
Hawkes process simulation and calibration toolkit
Hawkes
Hierarchical Biclustering
Group-Lasso with Hierarchical Clustering
High-Dimensional Inference
Fitting High Dimensional Linear Models
High-Dimensional Metrics
High-Dimensional Penalized Regression
Processing of hyperspectral reflectance data
Hello Java World
Functions for estimating hedonic elementary price indices
Visualizing Hypothesis Tests in Multivariate Linear Models
Making Labels for Herbarium Specimens in RTF and More
High-dimensional Additive Modelling
Hierarchical Generalized Linear Models
Data for The hglm Package
HIBAG -- HLA Genotype Imputation with Attribute Bagging
Tools for Highfrequency Data Analysis
Syntax highlighter
Determining and Evaluating High-Risk Zones
Hierarchical Semiparametric Regression of Test Statistics
Data Sets from the History of Statistics and Data Visualization
Utility Functions for R Histograms
Planning tools for ion beam therapy
Hadoop InteractiVE
Statistical Modeling and Inference via Hierarchical Likelihood
Data and examples package accompanying the book 'HMMs with R'
Hierarchical modelling of species community
Holiday and Half-Day Data, for Use with the 'TimeWarp' Package
High Performance Cluster Models Based on Kiefer-Wolfowitz Recursion
HTDA (High Throughput Data Analysis)
R Tools for Producing HTML (Base64 Coding and R Interface to the tth/ttm TeX to HTML Translator)
Clustering High-Throughput Transcriptome Sequencing (HTS) Data
Differential Analysis of RNA-Seq Data with Poisson Mixture Models
Functions for Hubbell's Grand Unified Theory
hwriter5: Writing HTML5 from R
Implementation of the Hybrid Monte Carlo and Multipoint Hybrid Monte Carlo sampling techniques
Hydrological Event Finding and Summarising (hydroEFS).
Meteorological Data for Hydrological Modeling
The hyperbolic distribution
Bayesian model selection with penalised splines and hyper-g prior
Work with Hyperspectral Data, i.e. Spectra + Meta Information (Spatial, Time, Concentration, ...)
Graphical interface for hyperSpec package, includes interactive plots
IB Real-time Data package
Functions for the Analysis of IBD Haplo Output.
Convert between different IBD-state labelling schemes
Convert Between Different IBD-State Labelling Schemes.
Individual-based metapopulation model
ica4fts package
IC-ac
Functions facilitating the estimation of the Intraclass Correlation Coefficient
Optimal Linearizing Transformations for Multivariate Data
R debugger
Italian fiscal code miscellaneous utilities
Finance routines developed by the IGIDR Finance Research Group.
Iterated Function Systems
Insightful Research Tools
Integrative network Graphic Engine Interface for R
This package implements The Nature Conservancy's Indicators of Hydrologic Alteration software in R.
Iteratively Re-weighted Multivariate Alteration Detection (iMAD)
Create html imagemaps
Share plots using the imgur.com image hosting service
Functions for working with immunoassay data.
Themes for ggplot2
A pedagogical tool to teach the basics of inference in population genetics
Functions to extract inferential values of a fitted model object
Bayesian Model Averaging with INLA
Development files for INLA
Convert inline comments to documentation
Storing, manipulating and analysis spectroscopy and associated data in R.
64 bit integer types
Integrated Data Analysis via Clustering
Integrating Multiple Modalities of High Throughput Assays Using Item Response Theory
Joint Modelling of the Gene-Expression and Bioassay Data, Taking Care of the Effect Due to a Fingerprint Feature
Coercion routines for network data objects in R
Tools for working with points and intervals
Interval Regression
Introduction to Computational Finance in R
Interval and Enum-Type Representation of Vectors
Integrated Postsecondary Education Data System (IPEDS) Access
Imprecise Inferential Framework on Statistical Reasoning
Builds and analyses Integral Projection Models (IPMs).
Improved Predictors
Introduction to Probability and Statistics Using R
irt. Spady's Item Response Model
Order-Restricted Inference for Microarray Experiments
A graphical user interface to conduct a dose-response analysis of microarray data
Isolation Forest
Active Set and Generalized PAVA for Isotone Optimization
R code associated with the book chapter "Simulation of stochastic kinetic models"
Introducing statistics using R
Provides Iterator Construct for R
Iterator Tools
Functions and Algorithms Specific to Pedometrics
Jacobi Rotations
Misc Small Tools and Helper Functions for Other Code of J. Buttlar
j-Differential Evolution Optimization
The jjplot plotting library for making beautiful plots fast and simple.
Generic Asynchronous Job Queue
Joint segmentation of multivariate (copy number) signals
Journal of Statistical Software Utilities
KHB: Comparing nonlinear regression models
Kirill's miscellaneous functions
Routines for Fitting Kinetic Models to Chemical Degradation Data
Classification and visualization
Multiple Choice Test Evaluation
stepwise k-means cluster model selection
Computes a matrix of K-mer counts.
k-Mean-Directions Algorithm
Knapsack Routines
Knock-Knock Jokes
Proposed Revision to stats::ks.test()
Axis Labeling
Convert labels or tables to a dendrogram
Libreria Del Laboratorio Di Statistica Con R
Sean Lahman's Baseball Database
Lasso Regression including group lasso and adaptive lasso
Trellis Graphics for R
Extra Graphical Utilities Based on Lattice
Latent Variable Models
Mixtures of Linear Latent Variable Models
LVM with censored and binary outcomes
LazyMLVA
Length-biased correction to survival curve estimation.
Layered and chained mixture models
Efficient Whole-Genome LD Based Haplotpe Block Recognition
Finding Locally D-optimal optimal designs for some nonlinear and generalized linear models.
Extrae la informacion de los metadatos de imagenes .jpg
Compute lethal doses (LD) with confidence intervals
Calculation of Low Flow Statistics for Daily Stream Flow Data
Computational Routines for Proton and Ion Radiotherapy
Linear Test Statistics for Permutation Inference
Linear Inverse Model examples and solution methods
Solving Linear Inverse Models
linear Likelihood-based Imprecise Regression
Linear Programming / Optimization
List-processing à la SRFI-1
Linear Model with Breakpoint
Add smoothing spline modelling capability to nlme.
Model II Regression
LMS (Cole-Green Stat in Med 1992 quantile regression)
Exact linear subset regression
Inference for stochastic kinetic genetic networks.
The Different Methylation Sites, Elements and Regions of lncRNA
Lattice Options and Add-Ins
Nonparametric Modelling of Spatial Risk for Areal Disease Data
Collection of Local Classification Methods
Collection of Artificial Classification Problems
Datasets for "Statistics: UnLocking the Power of Data"
Decimal log plotting in two and three dimensions
R logging package
Logistic Regression with Misclassification in Dependent Variables
Diagnostic tests for logistic regression models
Diagnostic Tests for Models with a Binomial Response
Functions for the Logitnormal Distribution
Double log normal distribution functions
Log optimal (universal) portfolios
Kernel Regression Smoothing with Local or Global Plug-in Bandwidth
Logistic Regression Trees for Multinomial and Ordinal Responses
Local Polynomial (Ridge) Regression
R Interface to 'lp_solve' Version 5.5.2.0
Linear Quantile Mixed Models
The Length of the Shorth
Calculates the lsmeans and their variances for lm, gls,lme,mer,lmer and glmer models
The Leverage Space Portfolio Modeler
Generalized iLUCK models
Meta-Analysis of Diagnostic Accuracy
This package provides some basic methods for meta-analysis
Model Averaging and Model Selection after Multiple Imputation
Utilities for Producing Maps
Maps of Poland for data visualization and graphics
Tools for Reading and Handling Spatial Objects
Markov Chains
Tools for Aquatic Sciences
Datasets and tutorials for use in aquatic sciences
MAS1343: Introduction to statistical computing
MAS2316: Introduction to regression and modelling
Bayes normal linear model and basic MCMC
Implementation of the Mass at Chance models for subliminal priming accuracy data
Procedure for deconvolving, weight-evidence and database search using STR DNA mixtures
likelihood-based image id code
Analysis of Stable Matchings
Mapping Transitions in Continuous Character Evolution
Sparse and Dense Matrix Classes and Methods
Modelling With Sparse and Dense Matrices
Methods that apply to rows and columns of a matrix
Maximum Likelihood Estimation and Related Tools
Tools for Two-Dimensional Monte-Carlo Simulations
Monte Carlo Identity-By-Descent Matrix Estimation
Mixed Conditional Logit Models
Multi criteria optimization algorithms and related functions
Multiple Cue Probability Learning in R
Applies different False Discovery Rate controlling procedures
MCS: Variable Subset Selection in Linear Regression
Markov Decision Processes (MDPs) in R
A GUI for interactive MDS in R
MeDiChI ChIP-chip deconvolution library
MEET: Motif Elements Estimation Toolkit
Multivariate Data Handling in Ecology and Biogeography
Multivariate Data Handling with S4 Classes and Sparse Matrices
Methylation Enriched LOci Normalization (MELON) for genome-wide DNA methylation experiments
Spatial pattern detection in genetic distance data
Tools for Management of Survey Data and the Presentation of Analysis Results
Data sets from Mixed-effects Models in S
Allow R to communicate with message queues
Meta-Analysis for Diagnostic Test Studies
Meta-analysis of genome-wide SNP association results
Metapopulations and Incidence Functions
Meta-analysis of RNA-seq data
Fit and test metaregression models
Spatio-Temporal Analysis and Mapping of Meteorological Observations
Analysis of Method Comparison studies
The Metrics Laboratory
Support for Metrological Applications
Pharmacometric Tools for Data Preparation, Modeling, Simulation, and Reporting
Analysis of Multivariate Event Times
Modelling Financial Time Series with R
Gene set analysis based on GSZ-scoring function and asymptotic p-value
Bayesian Model Selection in Logistic Regression for the Detection of Adverse Drug Reactions
Multiple Hurdle Tobit Models
Missing Data Imputation and Model Checking
Microeconomic Analysis and Modelling
Demand Analysis with the Almost Ideal Demand System (AIDS)
Analysis with the Constant Elasticity of Substitution (CES) function
Microeconomic Production Analysis with Distance Functions
Microeconomic Analysis with Non-Parametric Methods
Symmetric Normalized Quadratic Profit Function
MIF2 algorithm development package
Graphical User Interface of the mi Package
Derivative-free optimization algorithms by quadratic approximation
Combined miRNA- and mRNA-Testing
Miscellaneous Tools and Utilities
Handling missing values with/in multivariate data analysis (principal component methods)
Tools for multiple imputation of missing data
Clustering using Mixture Models
MixCluster performs the clustering of mixed-type data sets (data sets with different natures of variables) with missing values.
Mixed Tempered Stable Distribution
Design and Analysis of Mixture Experiments
Model Based Clustering, Classification and Discriminant Analysis Using the Mixture of Generalized Hyperbolic Distributions
Mixed model ANOVA for lm and lmer
Mixtures of proportional hazard models.
functions for mixed stock analysis
Mixture Distribution
Mixture of expert modelling with variable selection using penalization
Kinetic Evaluation of Chemical Degradation Data
Machine learning algorithms with unified interface and confusion matrices
Semiparametric multilevel frailty models, estimated via EMPL method
Multi-Layer Goup-Lasso
Examples from Multilevel Modelling Software Review
multinomial logit model
Most Likely Transformations
Map Pages of Memory
Graphing for Markov Models and Hidden Markov Models
mmSAR is an R package for the modelling of the Species-Area Relationship (SAR).
Matrix Normal Block EM
Model-Data Comparison
Classes and Methods for Training and Using Binary Prediction Models
Model-free estimation of a psychometric function
Validation of risk prediction models
A Model Object Framework for Regression Analysis
Model Evaluation and Analysis
Multivariate outlier detection and imputation for incomplete survey data
MODIS Acquisition and Processing
R tools for processing Level 2 Cloud Mask products from MODIS
Interface to the web processing service for MODIS data
Moment and Inverse Moment Bayes Factors
Connect MonetDB to R
Project MOSAIC (mosaic-web.org) manipulate examples.
Quantitative Analysis of Motion
Models of Trait Macroevolution on Trees
Visualizing and Analyzing Animal Track Data
Multi-Patient Analysis of Genomic Markers
lars algorithm
MPC - Multiple Precision Complex Library
Multi-sample and Multiplatform CNV.
Data sets and scripts for Modeling Psychophysical Data in R.
Meaningful Purposive Interaction Analysis
Farm out a sequence of jobs to a cluster of slaves using MPI.
Automating Mplus Model Estimation and Interpretation
Multivariate Projection Methods
Mixed-pair mutual information estimators
Marginal Product Mixture Model for Relational Event Data
Modern Psychometrics With R
Analyze Multinomial Processing Tree Models
Analyze Multinomial Processing Tree Models
M-quantile extension of the mixed linear model
Quality control of LCMS derived proteomic data
Data for Multilevel Regression and Poststratification
Multiresponse permutation procedure and its variable importance and variable selection methods.
MrP functions for MA class Zurich 2013
Statistical analysis for Methylation-sensitive Amplification Polymorphism data
Multivariate Standardized Drought Index (MSDI)
This package implements the method of simulated moments for the GLMM logit mixed model as described in Jiang's (1998) article, Consistent Estimators in Generalized Linear Mixed Models.
Utilities for Simulation in Monte Carlo Experiments
Markov Switching Kalman Filter
Multi-State Markov and Hidden Markov Models in Continuous Time
The MSToolkit library for clinical trial design
Creating MAGE-TAB files using mtcreator
Simultaneous Inference in General Parametric Models
Multi-Trait Genome-Wide Association Analyses
Multinomial Cochran-Armitage Trend Test
Multiplier Analysis for SAM and FSAM
Common Multiple Testing Procedures and Gatekeeping Procedures
Multi-Model Inference
Metric Unfolding
Interpolate Munsell Renotation Data from Hue/Chroma to CIE/sRGB
Basic Utilities for Data Management, Graphics, and Simulation
Unified multiple testing procedures
Statistical Methods for Analysing Multivariate Abundance Data
Modelling Multivariate Binary Data with Blocks of Specific One-Factor Distribution
Influence Measures and Diagnostic Plots for Multivariate Linear Models
Multivariate Probit Models
Multivariate Normal and t Distributions
Colins Usefull functions
Various plotting functions
Orbitrap Mass Spectrometry raw data example files
mzmatch and PeakML integration for XCMS.
Nested Archimedean Copulas
Nested Archimedean Copulas
Functions to construct non-additive genetic relatedness matrices
NameNeedle package
Provide namespace managment functions not (yet) present in base R
Functions for Optimal Non-Bipartite Matching
MLE for nested case cohort and case-cohort designs
Easier 'NetCDF' File Handling
Functions, Demos and Examples of Bayesian Analysis and Basic MCMC
nclRadvanced
Functions for R courses at Newcastle University
nclRefficient
nclRggplot2
A nclRintroduction
nclRintroductionB
nclRmodelling
A package for the Newcastle University R courses.
nclRprogramming
nclRprogrammingB
NDVI Time series extraction and analysis
Network Enrichment Analysis
A user friendly R package to perform the network enrichment analysis (NEA).
Needleman Wunsch computation
A Package to access the Neotoma Paleoecological Database using an API.
Biostatistics utilities for nephrology
Benchmarking of several gene network inference methods
Estimating network indices, including trophic structure of foodwebs in R
Exploratory Analysis of Gene Networks with Netmes, An R package for network-based measures
A Social Networks Simulation Tool in R
Classes for Relational Data
New boosting algorithms
Process Accelerometer Data from NHANES 2003-2006
Contains data from continuous NHANES (years 1999-2012).
Evolution simulation and classification
Monazite Datation for the NiLeDAM team
Nonlinear least squares and function minimization examples from NIST
Nonlinear least squares examples from NIST in form of functions for optim() and optimx()
Fundamental Physical Constants and Unit Conversions from NIST
Nested Loop Cross Validation
Testing pdKroneckeR class in nlme package.
Datasets and utility functions enhancing functionality of nlme package.
New pdMat class: pdKronecker (prototype version described in Galecki, Burzykowski (2013) book)
Functions for Nonlinear Least Squares Solutions
Wraps solvers in Package nloptr
Non-linear regression for agricultural applications
Functions for Nonlinear Least Squares Solutions
Tools for nonlinear regression diagnostics
Utilities and kinship information for research with the NLSY
Numerical Methods and Optimization in Finance
Prediction Intervals of Multi-Layer Neural Networks
NonDecomposable Graph
R package for nonlinear time series analysis
Nash Optimal Party Positions
Normal (1-d) Mixture Models (S3 Classes and Methods)
Dataset for Climate Analysis with Data from the Nordic Region
Analysis of multivariate normal datasets with missing values
The Normal Laplace Distribution
Normalised prediction distribution errors for nonlinear mixed-effect models
Non-Parametric and Semi-Parametric Stochastic Frontier Analysis
Data sets from "Nonlinear Regression Analysis and Its Applications"
Post-normalization of total copy numbers
Utility functions only useful on computers accessible to Nick Sabbe
Nucleus imaging
Number-Theoretic Functions
Accurate Numerical Derivatives
Provide a performant alternative to data.frame wrt factors
Numerical Methods for Economists
Ageing error
Bayesian delta-GLM package for constructing indices of CPUE data
Mapping functions for NWFSC
Non-linear time series
What the package does (short line)
Sensitivity analysis for Observational studies.
Visualisation of Oceanographic Data and Model Output
C++ ODE Solvers Compiled on-Demand
Sweave processing of Open Document Format (ODF) files
What the package does (short line)
Gillnet size selectivity analysis
Estimating oncogenetic trees
Class Unions, Matrix Operations, and Color Schemes for OOMPA
Data to Illustrate OOMPA Algorithms
Option Pricing and Estimation of Financial Models in R
Tools to analyse repertory grid data
R API to opentick databases
Additional operators and utilities for R
Analysing Phenotype Microarray and Growth Curve Data
OmniLog(R) Phenotype Microarray Example Data
Additional Functions for Analysing OmniLog(R) Phenotype Microarray Data
Tools for assisting the preparation and testing of objective functions for optimization.
EXPERIMENTAL: A GUI program to assist optimization problems in R
A Replacement and Extension of the 'optim' Function
Expanded Replacement and Extension of the 'optim' Function
A Replacement and Extension of the 'optim' Function
A Replacement and Extension of the 'optim' Function
Command line option parser.
A wrapper for optimization methods (function minimization with at most bounds and masks).
Trial package to replace optim() function with better codes
Loads the Gingival epithelial cell line ExpressionSet object
Order Restricted Clustering for Microarray Experiments
Generation of Artificial Ordinal and Binary Data
Orderbook visualization/Charting software
Consensus of canonical ordinations through the canonical redundancy analysis
Regression Models for Ordinal Data
Organic Mass Spectrometry
Fast Spatial Ancestry via Flexible Allele Frequency Surfaces
Rigorous - Aterial Spin Labelling
Rigorous - DICOM Input / Output
Rigorous - Diffusion Tensor Imaging
Rigorous - NIfTI+ANALYZE+AFNI Input / Output
Rigorous - Positron Emission Tomography
Orthogonal Bspline Basis Functions
OpenStreetMap and R
Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses
Ovarian Cancer TCGA Data
Plot 3d data and fitted surfaces
Convert values to/from raw vectors
Forward Selection with permutation (Canoco p.46)
classical pair trading based on cointegration in finance
Biodiversity Analyses in a Paleontological and Phylogenetic Context
A toolbox for writing Sweave or other LaTeX-based papers and reports
Parallel of Genome-Wide Association function
function to run parallel jobs in STRUCTURE
Parametric Frailty Models
Portfolio Allocation and Risk Management Applications
PARtial orders in Socio-EConomics
Detailed R source code parser
Partitioning Using Deletion, Substitution, and Addition Moves
A Laboratory for Recursive Partytioning
A Toolkit for Recursive Partytioning
What the package does (short line)
Collection of hot patches for R
Allele-specific Copy Number Analysis of whole genome data
Allele-specific Copy Number Analysis of CompleteGenomics Whole Genome data
Data for patchwork package.
Paternity tests using SNPs
a tool set for pathway based data integration and visualization
Testing Autocorrelation and Partial Autocorrelation Through Bootstrap and Surrogate Methods
Physical activity with accelerometers
Adding Progress Bar to '*apply' Functions
Methods for Graphical Models and Causal Inference
Finding the Number of Significant Principal Components
What the package does (short line)
Cloud and snow discrimination on AVHRR imagery
Panel Cointegration Tests
Principal curve analysis
Platform Design Info for NimbleGen 081229_hg18_promoter_medip_hx1
Platform Design Info for NimbleGen 2006-07-18_mm8_refseq_promoter
Platform Design Info for NimbleGen 2006-10-31_rn34_refseq_promoter
Platform Design Info for Affymetrix Atdschip_tiling
Platform Design Info for the example charmData dataset
Partial Discharge Clustering
panel data econometrics with R
Platform Design Info for the CHARM DNA methylation microarray
Platform Design Info for NimbleGen feinberg_mm8_me_hx1
PDF ultilities based on the PDF Clown Java library
Pedigree-based mixed-effects models
Tools for handling pedigrees
Peer performance analysis in R
Functions for removing outliers, with illustrations
tools for the analysis and visualisation of pems data
Portable Emissions (and Other Mobile) Measurement System Utilities
Person Fit
Econometric Tools for Performance and Risk Analysis
Exact P-values for Genome-Wide Association Analyses in Inbred Populations
Paired Functional Data Analysis
Pharmacokinetic/Pharmacodynamic Fisher Information Matrix
Quality speedy graphics compilation and caching with Sweave
Automated Processing of Webcam Images for Phenological Classification
Process Digital Images of a Vegetation Cover
Phylogeography using Approximate Likelihood
Panel Data Analysis with Heterogeneous Time Trends
An extension of some of the classes in phylobase. Tree objects now support subnodes on branches
Base package for phylogenetic structures and comparative data
Important and/or useful phylogenetic datasets
Examples of phylogenetic computations with Rcpp
PhysioBank R interface
Leveraging Genetic Evidence to Prioritise Drug Targets at the Gene, Pathway and Network Level
Networking Genetic Evidence to Prioritise Drug Targets at the Gene, Pathway and Network Level
Estimating the proportion of true null hypotheses for FDR
R tools for integrating phylogenies and ecology
DNA CNV analysis tools based on fused lasso type of model
Probabilistic Index Models
Probabilistic Index Models
Functions implementing pivotal Monte Carlo methods
Package development utilities
Utilities for Creating R Packages
Examples of PK/PD analysis.
Examples of PK/PD analysis for one subject using R, SAAM2
Analysis and visualization of data from plant breeding and genetics experiments
Representing and exploring data through sound
Linear Models for Panel Data
Plotting Multi-Dimensional Data
Plotting Multi-Dimensional Data - Using 'rgl'
Plot Spatial or Spatio-Temporal Data Over Google Maps
Tools for plotting with style
PLS Analyses for Genomics
Plug-in Kernel Density Estimation
Tools for plotting with style
Poor Man's GUI
Various Utilities for knitr and inla
Partial Moments
Profit and Loss calculation for financial instruments and portfolio's.
Local Polynomial Non Parametric Regression
Analysis of Political Networks.
Calculate Political Representation Scores
Qualitative Palettes with Many Colors
Polychoric and Polyserial Correlations
Simulate and test marker dosage for dominant markers in autopolyploids
Bayesian mixture models for marker dosage in autopolyploids
Statistical Inference for Partially Observed Markov Processes
Population Lab
Population-level moments
Generalized Pareto Distribution and Peaks Over Threshold
Phase plane plots of 2D nonlinear systems
Point Process Statistics
Predictive R-squared
Practical Numerical Math Functions
Assessment of risk prediction models
predIntervals
Paired Comparison Models for Preferences
prepRISA
Basic Functions for Pre-Processing Microarrays
Option Pricing with exponential MixedTS process
Modelling Primary production based on P-I curves
Handbook on Probability Distributions
Faste Gene Annotation in R
Process Data
Profile Dirichlet Process Mixtures
Tools for profiling inference functions for various model classes
Data to Illustrate the Tail-Rank Statistic
generalized probabilistic range ranker
Package for pseudo random number generation.
Non-Linear Mixed-Effects modelling using Stochastic Differential Equations.
Probabilistic Suffix Trees and Variable Length Markov Chains
Supplementary package "(Psycho-)Analysis of Benchmark Experiments"
Recursive Partitioning Based on Psychometric Models
Produce well-formatted tables for psychological research
Point-In-Polyhedron Test (2D and 3D)
Unit Roots in Panels of Time Series
Population Viability Analysis with Data Cloning
Power in a Group Sequential Design
Use Python from Within R
Quality Assurance and Quality Control Procedures for DICOM Data
Yet another package for Qualitative Comparative Analysis
Functions for quality control of RT-qPCR data
Tools for Quantitative Fitness Analysis (QFA) of Arrayed Microbial Cultures Growing on Solid Agar Surfaces
Tools for modelling the growth dynamics of arrays of large numbers of colonies and performing quantitative fitness analysis (QFA).
Quantmod Add-on
Quality Management: Examples from the concrete industry
Tools for Quantitative Risk Management
What the package does (short line)
Design of QTL experiments
Interactive software package for QTL visualization
Interface for Genotype Probabilities from Outbred Intercross
Utilities for Quantiles
QuACN: Quantitative Analysis of Complex Networks
Quadratic discrepancies
Quadratic programming modeling language
Qualtrics Survey Data Access
Quantitative Strategy Model Framework
Toolbox for quasi random number generation.
This packages provides an interface for a queue class along with providing a uni-process queue class.
ADMB to R interface functions
Estimate Structured Additive Regression Models with 'BayesX'
2d Rain Use Efficience model
HTML exportation for R objects
A GTK GUI for fitting and comparing GLM and GLMM in R
R code for Stock Synthesis
Manipulation of XML structures
Autoregressive Conditional Density Models
Radargrammetry
Retrieves altmerics data for any published paper from altmetric.com
ramPATH
True random numbers using random.org
Breiman and Cutler's random forests for classification and regression
Random Subspace
Toolbox for Pseudo and Quasi Random Number Generation and RNG Tests
Implementation of Random Variables
A platform for the study of macroecology of life history traits
Model-Based Clustering for Multivariate Partial Ranking Data
raster and external programs (FWtools, ArcGIS)
raster and FWtools
Visualization methods for the raster package
Raw-Means Plots for Experimental Designs
Methods to run batch jobs in R
BigQuery for R
Interactive course notes using R
rbrothers: multiple change-point recombination detection
Ancillary Functions for R Programming
set of ancillary functions
rcdklib - CDK libraries packaged for R
Reverse-Correlation Image-Classification Toolbox
R Commander
R Commander
R Commander
R Commander
R Commander
R Commander Plug-in for Fuzzy Clustering Methods (Fuzzy C-Means and Gustafson Kessel)
R Commander Miscellaneous Functions
'Rcmdr' Plug-in GUI for Biclustering
Title: 'Rcmdr' Plug-in GUI for Biclustering
Rcmdr EcoVirtual Plugin
Graphical User Interface for FactoMineR
R Commander Plug-in for Fuzzy Clustering Methods (Fuzzy C-Means and Gustafson Kessel)
Rcmdr Plug-in for Low Flow Analysis
R Commander Plug-In for statistics at NMBU
Graphical User Interface for SensoMineR
Efficiently search the R help pages
R Commander Plug-in for the 'survival' Package
Rcmdr Teaching Demos Plug-in
Graphical Integrated Text Mining Solution
UCA Rcmdr Plug-in
R Commander Plug-In for statistics at UMB
statistical inference and modeling of genealogies generated by epidemic and ecological processes
Tools for implementation and visualisation of Colony2 and its outputs.
Seamless R and C++ Integration
Rcpp integration for Armadillo templated linear algebra library
Rcpp bindings for the Boost Date_Time library
Deprecated 'classic' Rcpp API
Examples using RcppClassic to interface R and C++
Rcpp bindings for NumPy files
Global optimization by differential evolution in C++
Examples using Rcpp to interface R and C++
Rcpp integration for GNU GSL vectors and matrices
Classes for linear and generalized linear and nonlinear models
An interruptible progress bar with OpenMP support for c++ in R packages
Example use of the RcppProgress package
A R and Rcpp interface to the SIMD-oriented Fast Mersenne Twister (SFMT) Random Number Generator provided by http://www.agner.org/random Randomc.
Rcpp bindings for Sequential Monte Carlo
Interface the xts API via Rcpp
R interface to the CSDP semidefinite programming library
An S4 interface to the CSI UA API
RDEC -- regression with damped exponential correlation
An R extension library to use Peter Spelluci's DONLP2 from R.
Population size and degree distribution estimation in respondent driven sampling.
Improved Foreign Function Interface (FFI) and Dynamic Bindings to C Libraries (e.g. OpenGL)
Reactive Transport Modelling in 1d, 2d and 3d
Read qPCR data
Realized
Handling Bayesian networks
Finite Mixture Modeling, Clustering & Classification
Book-Crossing Dataset (BX) for recommenderlab
Jester Dataset for 'recommenderlab'
Developing and testing Recommender Algorithms using Apache Mahout and R
Using GRTS to sample along time
Data processing and plotting utilities of (half-)hourly eddy-covariance measurements
References for R
Wavelet-Domain Regression with Functional Data
Building regression models
Searching for footprints of selection using Haplotype Homozygosity based tests
Random Effects for the Identification of Differential Splicing
related: an R package for analyzing pairwise relatedness data based on codominant molecular markers
Functions for estimating parameters in software reliability models
RMI based REngine implementation
Remote Sensing
Entrez in R
Random effects ordination
R interface to the Encyclopedia of Life
GWAS for Multiple Observations on Related Individuals
Replication graph
Resource Selection (Probability) Functions for Use-Availability Data
Processing data from respiration chambers
RcmdrPlugin Easy Script Templates
Debugging with restore points
Random Forest Feature Contributions
Tools to analyse RFLP data
Forest Inventory and Analysis
R-Forge Build and Check Tools
R-Forge Build and Check Tools
Flexible GARCH modelling in R
Various R utility functions.
Create quizzes in GIFT Format
3D Visualization Using OpenGL
R/GNU Linear Programming Kit Interface
'rgl' in 'htmlwidgets' Framework
group method of data handling
Overlays on Static Maps
Interface to graph6 format for R
Interface Between GRASS 7 Geographical Information System and R
Functions to make R usage in social sciences easier (in french)
Data frame editor and dialog making wrapper for RGtk2
An R Implementation of Hybrid Algorithm for Non-Smooth Optimization (HANSO)
Package to estimate home ranges through a graphical user interface.
Heart Rate Variability Analysis of ECG Data
Robust Horvitz-Thompson Estimation
Classes and methods for hydrological modelling and analysis
Example data to demonstrate RHydro for WaSiM-ETH
Mapping rice area with time series of MODIS images
Computes and Compares Species Richnesses
Radiation data of Reiger et al (2004)
R bindings for ImageJ
An R Implementation of Implicit filtering algorithm
Access iNaturalist data through APIs
R package usage statistics
Computation of risk-based portfolios
Risk plots
Computation of Risk-Based Portfolios
River Research and Modelling
R Implementation of Java Extensible Markov Models
PDF ultilities based on the jPod Java library
R interface to Python via Jython
Analysis of Infectious Diseases using Stochastic Epidemic Models
LiDAR Data Processing and Visualization
Random parameters logit model
Interface to Lp_solve v. 5.5 to solve linear/integer programs
Interface to lp_solve v. 5.5
Identifying and describing chorotypes based on similarity between species distributions
Multivariate GARCH models
Mixture Composer
R interface to the Java Chinese word segmentation system of mmseg4j
Provides access to MonetDB through the JDBC interface
R MPFR - Multiple Precision Floating-Point Reliable
Raw-Means Plots for Experimental Designs
Multivariate random number generation
Some image data used in the RnavGraph package demos
XML-RPC Interface to NEOS
Interface to NetCDF Datasets
Provides an Interface to the Agent-Based Modelling Platform NetLogo
SFMT random number generator
Utility functions for working with Random Number Generators
Toolbox for WELL Random Number Generators
Well Equidistributed Long-period Linear modulo 2 random number generators by F. Panneton, P. L'Ecuyer, and M. Matsumoto.
An R extension library for constrained optimization with nlminb.
Tools for importing and manipulating NONMEM data.
An R Implementation of Hybrid Algorithm for Non-Smooth Optimization (HANSO)
Interpolation Grids for Packages of the 'RobASt' - Family of Packages
Optimally Robust Estimation for Extreme Value Distributions
Robust Kalman Filtering
Optimally robust influence curves for regression and scale
Store your observations: R-Package to the Observations Data Model from CUAHSI
Robust Time Series Analysis
Port of the S+ "Robust Library"
Basic Robust Statistics
Calculation of labeled molecular distances robust to certain model misspecification
eXtra / eXperimental Functionality for Robust Statistics
RODBC Extension
R Optimization Infrastructure
'ROI' Optimization Problems Based on 'NETLIB-LP'
ROI-Plugin ECOS
'ROI'-Plugin 'optimx'
R Optimization Modeling Language
ROML-Portfolio-Optimization
Roots of one-dimensional functions in R-only code
Nonlinear Root Finding, Equilibrium and Steady-State Analysis of Ordinary Differential Equations
Optimally Robust Estimation
Ross Ordering
Literate Programming in R
Workbook-style, web-based interface to R
R interface to the Java Chinese word segmentation system of paoding
PDF ultilities based on the PDF Clown Java library
R interface to the pepXML standard
Easy Interface to Advanced PostgreSQL Features
Interface to the geochemical modelling program PHREEQC
Use Python by Communicating Using a Pipe
R package usage statistics
R interface to the Agave and Foundation API
Point and Figure Package
Reads, Annotates, and Normalizes Reverse Phase Protein Array Data
Simple R/Processing Interface
Rproj4
Repeatability for Gaussian and non-Gaussian data
rpubchem - Interface to the PubChem Collection
rpubmed
R-based Qualitative Data Analysis
A package to bridge RQDA and tm
Regression Quantiles for Panel Data
An R extenstion library to use quadprog for portfolio Optimization
R interface to the QuantLib library
General univariate ARCH models simulation and estimation
Implementation of ReliaSoft Ranking Method
Little Helpers
Random Recursive Partitioning
Robust Small Area Estimation
Statistical Analysis of Financial Data in R
Simulation of ecological lake models
Basic Statistics and Data Analysis
recursive segmentation (rseg)
Robust Structural Equation Modeling with Missing Data and Auxiliary Variables
Shared environment across multiple independent R sessions
Siena - Simulation Investigation for Empirical Network Analysis
Siena - Simulation Investigation for Empirical Network Analysis
RSiteSearch
R interface to the Java Chinese word segmentation system of smartcn
Handling survey data in R. (official release)
Handling survey data in R. (beta version, not for use)
Network tools for the Rsocialdata package
An R extenstion library to use SOCP from R.
General Non-Linear Optimization
Non-linear Programming with non-linear Constraints
Multivariate Methods in Ecology with R: Simulating Communities
R package usage statistics
Interface to Snowball implementation of Porter's word stemming algorithm.
Subgroup Discovery and Analytics
Synchronious locking mechanisms
RTanalyze, reaction times storage and analysis.
A new tool for exporting TCGA Firehose data
unit and system testing for R
An Sweave Driver to Process Files with R Code and RTF Text
STK++ Core Library Integration to R using Rcpp
Utility function for modeling and simulation of (sub-second) response times in cognitive psychology
Truncated Newton Function Minimization with Bounds Constraints
Interpolation of Data with Variable Spatial Support
Raster Time Series Analysis
Convert Text into Speech
Convert Text into Speech (Voice Files in .mp3, .flv, and .wav Format)
Univariate GARCH models
Generating numeric sequence items for intelligence tests
Financial Modelling Framework extension for Russian stock market
A repository for a variety of useful functions.
Variable Metric Nonlinear Function Minimization
Variable metric nonlinear function minimization with bounds constraints - experimental
R interface to the Vowpal Wabbit
Time-Frequency analysis of 1-D signals
R wrapper around the Yahoo! Weather, Google Weather and NOAA APIs
An interface to the Weibo open platform
Performs a Random Walk on a Graph
Chinese word segmentation
Mapping global data, vector and raster.
Country boundaries at high resolution.
Get XKCD comic from R
Biclustering via Sparse Singular Value Decomposition Incorporating Stability Selection
SA Counterparty Credit Risk under Basel III
Safe Binary Regression
Sampling Surface Simulation for Areal Sampling Methods
Robust Covariance Matrix Estimators
Spectral Analysis for Physical Applications
Data sets from "SAS System for Mixed Models"
Scaling Analysis Toolkit
Semiparametric Bayesian Factor Analytic Copula Models
A collection of SBML Models with some experimental and simulated datasets.
Simplified Bayesian Sensitivity Analysis
Single-Case Data Analyses for Single and Multiple AB Designs
3D Scatter Plot
A package on the Schwartz two-factor commodity model
Spectrophotometry : CInetic ANalysis
Political Behaviour Analysis Tool
Collects and Reports Usage Data on R Packages
Proper Scoring Rules
Change Point Test for Spatio-Temporal Functional Data
Transcript-Based Unit Tests that are Easy to Create and Maintain
Sampling: Design and Analysis
Companion to Statistics and Data Analysis for Financial Engineering
Statistical Data Preparation Indicators
Simulation and Inference for Stochastic Differential Equations
Species Distribution Modelling
Species Distribution Modelling (old version)
Calculates parameters of the seawater carbonate system
Utility functions for reading and analyzing trends in common used sealevel archives.
Spatial Search Trees
Seasonal analysis of health data
Dispersal of seed routines
Annotation-aware segmentation via dynamic programing
A Fast Segmentation Algorithm
My First Collection of Functions
Regularization for Variable Selection in Model-Based Clustering and Discriminant Analysis
Structural Equation Models
Structural Equation Models
Structural equation modeling diagnostics
Structural Equation Modeling Using Partial Least Squares
Unified Specification of Structural Equation Models
Sensitivity Analysis
Principal Stratification Sensitivity Analysis Functions
Sensory data analysis with R
Scan Statistics for CNV Detection with CBS
Distance Between State Sequences
Biological Sequences Retrieval and Analysis
Analysis of nucleotide, sequence and quality content on fastq files.
Set (Normal) Random Number Generator and Seed
Segmentation of GE data
Sparse group lasso generic optimizer
Sparse group lasso optimizer
Functions for Plotting Graphical Shapes, Colors
A Soil Survey Toolkit
Models and Data Sets for the Study of Species-Area Relationships
Systematic Identification of Bimodally Expressed Genes Using RNAseq Data
Data Sets and Utility Functions for the 'SIGIL' Course
Calculate ANSI S3.5-1997 Speech Intelligibility Index
Simulating data in R
Shiny GUIs for the simdat.base data simulation package
Simulation of Ecological (and Other) Dynamic Systems
Model collection for the simecol package
Collection of Helper Utilities
Simulation of clustered multi-state data
Interface to use the modelling framework SIMPLACE
A collection of methods for time series analysis and signal detection.
Introduction to R: sintro
Functions for Calculating Daily Solar Radiation and Evapotranspiration
Multi electrode analysis
Densities and Sampling for the Skellam Distribution
The Skew Hyperbolic Student t-Distribution
Data Sets from Ramsey and Schafer's "Statistical Sleuth (2nd Ed)"
Data Sets from Ramsey and Schafer's "Statistical Sleuth (3rd Ed)"
Slide Designer GUI Package
Multidimensional Scaling
Sequential Monte Carlo samplers in S4
Sparse Multivariate Diffusions
Sparse Multivariate Differential Equations
SMfSB 2e: Stochastic Modelling for Systems Biology, second edition
Smooth models for interval-censored data with applications to survival and illness-death models
Combine Social Network Analysis and Text Mining
Single-observation NOn-Parametric Goodness Of Fit
Parallel Computing Toolset for Genome-Wide Association Studies (GWAS)
Computing the Sobol Indices
Computing the Sobol Sensitivity Indices
Satellite Observations for Fire Activity
Soft Classification Performance Measures
Training Multi-Layer Neural Network for Softmax Regression and Classification
Soil Database Interface
Models of Soil Organic Matter Decomposition
spatial soil data related functions
Soil Spectroscopy Tools and Reference Models
Solar Photovoltaic Systems
Estimating Abundance of Clones from DNA fragmentation data
sorvi - avoimen datan tyokalupakki
Search Contributed R Packages, Sort by Package
Spatial modelling
Sparse grid integration in R
Sparse Discriminant Analysis
Spatial Clustering using Fuzzy Geographically Weighted Clustering
Modelling Spatial Extremes
Nonparametric estimation of spatial segregation in a multivariate point process
R Functions for Working with Spatial Data
Model-Based Clustering of Spatio-Temporal Data
Copula Driven Spatio-Temporal Analysis
Semi Parametric Distribution
Spatial Dependence: Weighting Schemes, Statistics and Models
Exploratory space-time data analysis
Special Functions
Word Specificity
Mass Spectral Library Dolphin Blubber 2011
Example OrgMassSpecR Mass Spectral Library
Singular Spectrum Analysis (SSA) Tools for Time Series Analysis
Spectroscopy data analysis
A GUI based importing and filtering tool
Package containing the required libraries (jars) for speedR
speedR's table filter library
Spatial Stochastic Frontier Models
Interface between GRASS 7+ geographical information system and R
Interface between GRASS 7 Geographical Information System and R
Geographically Weighted Regression
Estimation of Spatial Autoregressive Models with and without Heteroskedastic Innovations
Species Identity and Evolution in R
Species Identity and Evolution in R--development
Sparse Generative Model and Its EM Algorithm
Spatial and Space-Time Point Pattern Analysis
Nonparametric bayesian survival analysis
SPecies' LImits by Threshold Statistics
Econometric Models for Spatial Panel Data
Supplemental S-PLUS functionality in R
Plotting (Social) Networks on Maps
Infrastructure for Sports Analytics
Fit the SPRING model
Profiling, timing and optimisation utilities
Spatial Simultaneous Equations and Spatial Sur Model
sqliteTools
analysis of very large complex survey samples (experimental)
subset quantile normalization
Squared extrapolation methods for accelerating fixed-point iterations
Subject Randomization System
Singular Spectrum Analysis
Sample Size Estimation
Stable Distribution Functions
Stability Assessment of Statistical Learning Methods
Fish Migration Monitoring (stacomiR)
ODBC Connection Class for Package stacomiR
Spike Train Analysis with R
R functions for working spatial/remote sensing data.
Datasets for Stat2
Statistical Complexity and Information Measures for Time Series Analysis
Functions to Plot a Structure-Time Diagram
Fast Functions for Stock Market Analysis
STructure Optimized Proximity Scaling
Stochastic Simulator for Reliability Modeling of Repairable Systems
Space-Time Point Pattern simulation, visualisation and analysis
Functions and data useful for social stratification research
Strategy Switch Model
Implementation of Frequent Pattern Mining for stream
Moving Generator
Fast implementation for tNN in stream
THE string processing package for R
This package provides functions to plot a structure-time diagram
Distributions for Historical Information
Obsoleted package - use rsubgroup!
Obsoleted package - use rsubgroup!
Subplex Optimization Algorithm
Summarize distributions in a concise way
Survival Analysis using Copula's
Generating Robust Biclusters from a Bicluster Set (Ensemble Biclustering)
RPPA Analysis Package
'SuperCurve' GUI Package
SuperCurve RPPA Sample Data
supraHex: a supra-hexagonal map for analysing tabular omics data
Functions for a stratified SURvey DESign
Evaluation of Failure Time Surrogate Endpoints in Individual Patient Data Meta-Analyses
Survival analysis with BART
Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic Phenomena
Analysis of Complex Survey Samples
What the package does (short line)
Simulation of Survival Studies with Microarray Data
Miscellaneous Functions for Survival Data
Analysis of longevity data.
Summaries of Variability of Irregularly Spaced Longitudinal Data
SWALE: Simultaneous Waveform Amplitude and Latency Estimation.
Multilevel Regression with Post-Stratification for Switzerland
Framework for the Analysis of Genomic Prediction Data using R
Boost mutex functionality for R.
Methods for computing spatial, temporal, and spatiotemporal statistics
Recombination detection using synonymous distances
Interface to The Synergizer service for translating between sets of biological identifiers.
Estimating Systems of Simultaneous Equations
Functions for Creating Summary Tables for Statistical Reports
Formula-Driven Table Generation
The Tail-Rank Statistic
The great Tao package
Tumor Abberation Prediction Suite
'Tcl/Tk' Utilities Package
Tool Box for Data Importation and Display
Demonstrations for Teaching and Learning
Zero-coupon Yield Curve Estimation
Infrastructure for ternary plots and ternary classifications (S3-classes)
test
Testing external pointers with finalization in R using C++
Threshold exceedences and multivariate extremes
Conversion of R Regression Output to LaTeX or HTML Tables
Time Frame Extensions (in Development)
Time Frame User Utilities
Time Frame Coding Kernel
Time Frame Coding Kernel Extensions
R API to TrueFX(tm)
TH's Data Archive
TH's private functions
Threshing and Reaping for Principal Components
Tides
R Graphics Output in LaTeX Format
timebart: Survival Analysis with BART
Rmetrics - Chronological and Calendar Objects
Rmetrics - Financial Time Series Objects
Date Calculations and Manipulation
Fitting Separable Nonlinear Models in Spectroscopy and Microscopy
QC Procedures for the GeneTitan platform
TK widget tools for rgl package
Various utility functions
Constructs homeranges and explores time use patterns from location data
Development package for tlocoh
Text Mining Package
A Text mining toolkit for international characters especially for Chinese.
R interface to CRF++ for conditional random fields
R interface to word2vec
Flow and Load Duration Curve plots for TMDL
Teaching Marketing Engineering with R
Text corpus sentiment analysis
Inference, Aggregation and Visualization for Top-K Ranked Lists
Implement tour methods in pure R code
Toy R package
Kinetic analysis for dynamic nuclear imaging: compartmental models
Store Objects on Disk Automatically
Trading System Modelling
Trades, Curves, Rating Tables, Add-on Tables, CSAs
classes and methods for trajectory data
Trajectory Miner: a Toolbox for Exploring and Rendering Sequences
TraMineR Extension
Functions for Travel Demand Modeling
Hotspot Detection using Classification Trees
Provides the standard distribution functions for the triangle distribution
Tree methods for classification of imbalanced data
Metropolis sampler and supporting functions for estimating animal movement from archival tags and satellite fixes
R API to TrueFX
Use Truncated Distribution functions
Time series Aggregation
'TSdbi' Database Comparison
Analysis of Count Time Series
Time Series Database Interface
'TSdbi' Extensions for Fame
'TSdbi' Extension to Import Time Series from Web Sources via JSON
Trimmed Spearman-Karber Method
'TSdbi' Extensions to Wrap Miscellaneous Data Sources
Additional 'TSdbi' Extensions to Wrap Miscellaneous Data Sources
'TSdbi' Extensions for 'MySQL'
'TSdbi' Extensions for 'PostgreSQL'
'TSdbi' Extension to Connect with 'SDMX'
Two-Stage Stochastic Programs
Generic SQL Helper Functions for 'TSdbi' SQL Plugins
Test Package 1
Test Package 2
TeX to HTML/MathML Translators TtH/TtM
Technical Trading Rules
Analysis of music and speech
Toolkit for Weighting and Analysis of Nonequivalent Groups
Cascading configuration files
parallel DEMC
Linear models for twin data
Utility functions of tw
tw 3D utility functions
Support for array based state variables in ODE.
Standard errors for basic nlme and gnls model predictions
The family of two piece distributions
Improves ease of use of IBrokers and FinancialInstrument
tw snowfall extension
General-purpose unconstrained non-linear optimization
Umpire Package
collection of useful R functions in the UncertWeb
Modelling multilayer anisotropic stacks
You didn't know you didn't know?
Unit Root and Cointegration Tests for Time Series Data
Unit Root Tests and Graphics for Seasonal Time Series
US Census 2000 Suite of R Packages
US Census 2000 Block Group Shapefiles and Additional Demographic Data
US Census 2000 Designated Places Shapefiles and Additional Demographic Data
US Census 2000 Tract Level Shapefiles and Additional Demographic Data
US Census 2010 Suite of R Packages
US Census 2010 Block Group Level Shapefiles and Additional Demographic Data
US Census 2010 Blockgroup Level Shapefiles and Additional Demographic Data
US Census 2010 County Level Shapefiles and Additional Demographic Data
US Census 2010 Tract Level Shapefiles and Additional Demographic Data
Uncertainty analysis for species distribution models
Documents Filed under the US Lobbying Disclosure Act
Importing, Exporting and Converting Between Datasets and LaTeX
Datasets and utility functions.
Variance Component Models
Variable Descriptions
The Variance Gamma Distribution
Variable Selection for Model-Based Clustering of Continuous, Count, Categorical or Mixed-Type Data Set with Missing Values
Time series decomposition with VBV (Verallgemeinertes Berliner Verfahren)
'vcd' Extensions and Additions
Tree-Based Varying Coefficient Regression for Generalized Linear and Ordinal Mixed Models
Variance dispersion graphs and Fraction of design space plots for response surface designs
Modified Statistical Tools
Community Ecology Package
Classes and Methods for Phytosociology
Venn and Euler area-proportional diagrams
Variance Heterogeneity Genome-Wide Association Study
Virtual tables for RSQLite
Assembling virtual plant communities
R package for training and evaluating visual count estimates
Variant Pattern Analyzer for next-generation sequencing study
Vector Symbol Architectures for AI & CogSci
Mining Austrian administrative court rulings
Mapping evapo-transpiration from satellite images.
A Wavelet-based Method for ChIP-Seq peak calling
Basic Wavelet Routines for One-, Two- and Three-dimensional Signal Processing
Wavelet-Based Models for Tiling Array Transcriptome Analysis
waveTiling Example Data
Weather data manipulation
obtain daily weather data
Create HTML Web maps
Clustering of Weighted Data
Weighted mean of species attributes
WaterInfo Data Ripper
Iteratively Re-Weighted Least Squares
GUI implementing Bayesian working memory models
Wavelet Methods for Time Series Analysis
Finding Word Alignment Using IBM model 1 for a Given Parallel Corpus and Its Evaluation
Word Clouds
Distributional Semantic Models in R
Cross-platform Perl based R function to create Excel 2003 (XLS) files
A package of R.R. Wilcox' robust statistics functions
A Collection of Robust Statistical Methods
Non-parametric Jonckheere-Terpstra trend test on weighted data
Datasets and scripts for WWGbook.
Exploring Genomic Relations for Enhanced Interpretation Through Enrichment, Similarity, Network and Annotation Analysis
Access Apple Xgrid using R
Plotting ggplot2 graphics in a XKCD style
X-METRIC Multi-Echelon Techniques for Replaceable Inventory Control
Remote Procedure Call (RPC) via XML in R
Tools for reading XML Schema within R
Support for xterm256 escape sequences
Time Series Factor Analysis Extra Functions
eXtensible Time Series
Supplementary Functionality for xts
Calculates Credit Risk Valuation Adjustments
Yet Another GEE Solver
Nearest Neighbor Observation Imputation and Evaluation Tools
Data exploration tools from Yale University.
Microarray GDS1887 DATA
Yet another package of misc functions
Extensible Framework for R Reporting
Yet Another Self Organising Map Implementation
Modelling and estimation of the yield curve
Plant architectural analysis with Yplant and QuasiMC.
The YUIMA Project Package for SDEs
A Graphical User Interface for the 'yuima' Package
Data sets from Biostatistical Analysis
Zigzag Expanded Navigation Plots
Hierarchical Clustering Based on Log-Likelihood Ratio for Zero-Inflated Data
Statistical models for word frequency distributions
S3 Infrastructure for Regular and Irregular Time Series (Z's Ordered Observations)
Supplementary Functionality for zoo Time Series

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