a4Core

Automated Affymetrix Array Analysis Core Package

Found **1902** packages.

a4Core

Automated Affymetrix Array Analysis Core Package

a4Reporting

Automated Affymetrix Array Analysis Reporting Package

abd

The Analysis of Biological Data

abind

Combine Multidimensional Arrays

abmi

Data Processing and Analysis for the Alberta Biodiversity Monitoring Institute

abmiOld

Data Processing and Analysis for the Alberta Biodiversity Monitoring Institute

abrem

Abernethy Reliability Methods

abremDebias

Maximum Likelihood Estimation Models with Bias Adjustment Options for Reliability Analysis

abremout

Output functions for the Abernethy Reliability Methods package (abrem), including plotting.

abremPivotals

Linear Rank Regression Models with Pivotal Monte Carlo Methods for Reliability Analysis

accelerometry

Functions for Processing Minute-to-Minute Accelerometer Data

AcceptABEL

A package for controlling false positives rate in GWAS by estimating local inflation factor

ACEt

Estimating Dynamic Heritability and Twin Model Comparison

acnr

Annotated Copy-Number Regions

adagio

Discrete and Global Optimization Routines

ade4

Analysis of Ecological Data : Exploratory and Euclidean Methods in Environmental Sciences

ade4TkGUI

'ade4' Tcl/Tk Graphical User Interface

adegraphics

An S4 Lattice-Based Package for the Representation of Multivariate Data

adephylo

adephylo: exploratory analyses for the phylogenetic comparative method.

adespatial

Multivariate Multiscale Spatial Analysis

ADGofTest

Anderson-Darling GoF test

admbsecr

SECR models with supplementary location information

advclust

Object Oriented Advanced Clustering

advfclust

Fuzzy Clustering (Ensembling and Optimization)

AEM

Tools to construct Asymmetric eigenvector maps (AEM) spatial variables

afe

Analysis of Factorial Experiments

afex

Analysis of Factorial Experiments

AFLP

Analysis of AFLP data

agrmt

Calculate Agreement or Consensus in Ordered Rating Scales

ALA

Data sets and examples for the book "Applied Longitudinal Analysis"

alabama

Constrained nonlinear optimization

alfa

Apache Log File Analysis

alpha

Robust Cronbach's alpha with missing and non-normal data

alplot

Plot array lists

alr

alternating logistic regression

alr3

Data to accompany Applied Linear Regression 3rd edition

alr4

Data to accompany Applied Linear Regression 4th edition

ambur

Analyzing Moving Boundaries Using R

amburhva

AMBUR-HVA

anacor

Simple and Canonical Correspondence Analysis

Animal

Analyze time-coded animal behavior data

ANN

Feedforward Artificial Neural Network optimized by Genetic Algorithm

ant

Version of ant specific to R

apicultuR

A wrapper to the apicultuR set of APIs for NLP in Spanish

AppliedPredictiveModeling

Functions and Data Sets for 'Applied Predictive Modeling'

APR

Applied Psychometrics With R

aqp

Algorithms for Quantitative Pedology

aqr

Interface methods to use with an ActiveQuant Master Server

AquaEnv

Integrated Development Toolbox for Aquatic Chemical Model Generation

archetypes

Archetypal Analysis

arf3DS4

Activated Region Fitting, fMRI data analysis (3D).

arfS4

Activated Region Fitting, fMRI data analysis.

arm

Data Analysis Using Regression and Multilevel/Hierarchical Models

aroma.apd

A probe-level data file format used by aroma.affymetrix [DEPRECATED]

aroma.tcga

Methods for accessing online The Cancer Genome Atlas (TCGA) data

array

Array factor for 2D periodic arrays

arrayhelpers

Convenience Functions for Arrays

arulesNBMiner

Mining NB-Frequent Itemsets and NB-Precise Rules

arulesViz

Visualizing Association Rules and Frequent Itemsets

arulesVizOld

arulesViz - Visualizing Association Rules and Frequent Itemsets

ASAtable

Model-output formatter for sociological research.

aspect

A General Framework for Multivariate Analysis with Optimal Scaling

ASSET

An R package for subset-based association analysis of heterogeneous traits and subtypes

asuR

Advanced statistics using R

AtelieR

A GTK GUI for teaching basic concepts in statistical inference, and doing elementary bayesian tests.

atmosphere

weather and climate analysis

Atools

Atools

audited

Automatic Tracing and Display of Changes to Row Count

aurelhy

Hydrometeorological interpolation

austin

A package for doing things with words

autocorr

Testing Autocorrelation through bootstrap and surrogate methods

background

This packages allow users to ``background'' computations.

BADGER

A package for identifying sample mixups in combined expression and genotyping studies.

bamlss

Bayesian Additive Models for Location Scale and Shape (and Beyond)

BAPC

Projection of cancer incidence and mortality data using Bayesian APC models fitted with INLA

barcode

Barcode distribution plots

barebone

Multivariate Methods in Ecology with R: Basic Algorithms

base64

Base 64 encoder/decoder

basefun

Infrastructure for Computing with Basis Functions

batman

Bayesian AuTomated Metabolite Analyser for NMR spectra

baybi

Bayesian Biclustering with Subject and Variable Importance

bayesdnamix

Procedure for evaluate marginal likelihood for quantitative STR DNA mixture bayesian models

BayesFactor

Computation of Bayes factors for common designs

BayesFactors.gibi

Compute Bayes factors using the GIBI interface

BayesR

Bayesian Regression in R

BayesSingleSub

Computation of Bayes factors for interrupted time-series designs

BayesXdev

R Package Distribution of the BayesX C++ Development Sources

BB

Solving and Optimizing Large-Scale Nonlinear Systems

bbmle

Tools for general maximum likelihood estimation

BcDiag

Diagnostics Plots for Bicluster Data

BCE

Bayesian composition estimator: estimating sample (taxonomic) composition from biomarker data

bclust

Bayesian Hierarchical Clustering Using Spike and Slab Models

bdlp

A Package for Transparent Artificial Data Generation

BDR

Big Data Ready

bdsmatrix

Routines for Block Diagonal Symmetric matrices

bertin

Bertin matrix display

Bessel

Bessel Functions Computations and Approximations

betapart

Partitioning Beta Diversity into Turnover and Nestedness Components

betareg

Beta Regression

bfa

Bayesian Factor Analysis

bfast

Breaks For Additive Season and Trend

bfp

Bayesian Fractional Polynomials

BGLR

Bayesian Generalized Linear Regression

BGLRutils

Utilities for Bayesian Generalized Linear Regression

BH

The Boost C++ Libraries

bibtex

bibtex parser

biclust

BiCluster Algorithms

biclustRank

Ranking of biclusters using another data source

bigalgebra

BLAS routines for native R matrices and big.matrix objects.

biganalytics

A library of utilities for big.matrix objects of package bigmemory.

biglme

Procedure for doing inference of one-way Linear Mixed Effects models.

bigmemory

Manage massive matrices with shared memory and memory-mapped files

bigmemory.sri

A shared resource interface for Bigmemory Project packages

bigmlogit

Estimation of models with limited dependent variables

bigRR

Generalized Ridge Regression (with special advantage for p >> n cases)

BimodalIndex

The Bimodality Index

binom

Binomial Confidence Intervals For Several Parameterizations

binomTools

Performing diagnostics on binomial regression models

BioCalc

Bioclim Variables Calculator

BioCro

Simulation of Biomass Crops

BIOMOD

Ensemble platform for species distribution modeling

biomod2

Ensemble Platform for Species Distribution Modeling

biostatUZH

Misc Tools of the Department of Biostatistics, EBPI, University of Zurich

BiplotGUI

Interactive Biplots in R

bit

A Class for Vectors of 1-Bit Booleans

bit64

A S3 Class for Vectors of 64bit Integers

biVar

Bias-Variance Analysis of the Misclassification Rate

biwavelet

Conduct univariate and bivariate wavelet analyses

BLCOP

Black-Litterman and copula-opinion pooling frameworks

blmr

Broken Line Model Regression

blockDemac

parallel DEMC with several parameter blocks

blockmodeling

An R package for generalized and classical blockmodeling of valued networks

blockra

Block Rearrangement Algorithm

blockrand

Randomization for block random clinical trials

blotter

Tools for Transaction-Oriented Trading Systems Development

BLR

Bayesian Linear Regression

blupsurv

Recurrent events with BLUPs

bmem

Mediation analysis with missing data using bootstrap

BMRV

Bayesian Models for Rare Variant Association Analysis

boilerpipeR

Interface to the boilerpipe Java library by Christian Kohlschutter (http://code.google.com/p/boilerpipe/)

bomDataRipper

BOM data getter

BoostHeaders

The Boost C++ Libraries

bootBCa

Function to find nonparametric BCa intervals

bootfs

Derive Robust Feature Sets for Two or Multiclass Classification Problems

BOS

Model-based clustering of multivariate ordinal data relying on a stochastic binary search algorithm

bounds

Bounds for causal and sufficient-cause interactions

bpkde

Back-Projected Kernel Density Estimation

bpm

Basic functions for panel data analysis

bptwin

Cumulative incidence models for twin data

breakpointError

Breakpoint detection error

brew

Templating Framework for Report Generation

brglm

Bias reduction in binomial-response generalized linear models.

bride

Brier score decomposition of probabilistic forecasts for binary events

btergm

Temporal Exponential Random Graph Models by Bootstrapped Pseudolikelihood

btutils

Utilities for Simple Back Testing of Trading Strategies

BUGSExamples

Collection of BUGS examples

bvpSolve

Solvers for Boundary Value Problems of Differential Equations

bvsflex

Integrative Bayesian variable selection with flexible priors

c060

Extended Inference for Lasso and Elastic-Net Regularized Cox and Generalized Linear Models

c3net

Infering large-scale gene networks with C3NET

C50

C5.0 Decision Trees and Rule-Based Models

ca

Simple, Multiple and Joint Correspondence Analysis

CALIBERcodelists

Generate ICD10, Read and OPCS codelists

CALIBERdatamanage

Data Management Tools for CALIBER Datasets

CALIBERdrugdose

Extract drug dose from unstructured dosage text

CALIBERfma

R interface to the Freetext Matching Algorithm

CALIBERrfimpute

Multiple imputation using MICE and Random Forest

calibFit

Statistical models and tools for assay calibration

CAMAN

Finite Mixture Models and Meta-Analysis Tools - Based on C.A.MAN

CandidateBacon

Provides a measure of the average connectedness among as set of candidate genes and a network-specific distribution of the connectedness of random gene pairs for an arbitrary network of pair wise interactions.

candisc

Visualizing Generalized Canonical Discriminant and Canonical Correlation Analysis

candlesticks

Candlestick Pattern Recognition

CANS.works

Import, manipulate and analyze data from the Massachusetts CANS tool

car

Companion to Applied Regression

cardidates

Identification of Cardinal Dates in Ecological Time Series

caret

Classification and Regression Training

caretLaTeX

LaTeX Classes for the caret Package

caspr

Cellular Automata for Spatial Pressure in R

catlearn

Formal Modeling for Psychology

cbmisc

Claudia's collection of miscellaneous functions

cbmodels

Collection of "combined" models: PCA-LDA, PLS-LDA, etc.

cccp

Cone Constrained Convex Problems

ccgarch2

Conditional Correlation GARCH Models

cdb

Reading and Writing Constant DataBases

cdtRefficient

cdtRefficient

cdtRggplot2

cdtRggplot2

cdtRintroduction

cdtRintroduction

cdtRmodelling

cdtRmodelling

cdtRprogramming

cdtRprogramming

censReg

Censored Regression (Tobit) Models

CENTIPEDE

CENTIPEDE learns a DNaseI footprint of a transcription factor and predicts its binding sites

cfa

Analysis of Configural Frequencies (CFA)

cffdrs

Canadian Forest Fire Danger Rating System

CFL

Compensatory Fuzzy Logic

cgenpp

Parallel genomic evaluations

cghseg

Segmentation methods for array CGH analysis

cgmisc

Various functions useful in computational genetics, e.g. GWAS.

CHAID

CHi-squared Automated Interaction Detection

charmData

An example dataset for use with the charm package

CHNOSZ

Chemical Thermodynamics and Activity Diagrams

chromatosimul

What the package does (short line)

cinf

Basic tools for chemoinformatics

circular

Circular Statistics

CITAN

CITation ANalysis toolpack

CItools

Computation, comparison and sensitivity analysis of composite indicators of performance

CLAG

An unsupervised non hierarchical clustering algorithm handling biological data

clamix

Clustering modal multi valued symbolic data

ClassComparison

Classes and Methods for "Class Comparison" Problems on Microarrays

ClassDiscovery

Classes and Methods for "Class Discovery" with Microarrays or Proteomics

classInt

Choose Univariate Class Intervals

ClassPrediction

Classes and Methods for "Class Prediction" with Microarrays or Proteomics

classSNitch

Classifies RNA Structure Change in Chemical Mapping Data

ClimMob

Crowdsourcing climate-smart agriculture

climstats

R functions for working with station and gridded climate data.

climtrends

Statistical Methods for Climate Sciences

clustDDist

Clustering Discrete Distributions

Clustericat

This package performs clustering for categorical dataset.

clusterpathRcpp

Fast agglomerative convex clustering, original Rcpp implementation

cmaes

Covariance Matrix Adapting Evolutionary Strategy

cMonkey

cMonkey integrated biclustering algorithm

cmprskWeb

Multistage Competing Risks Analysis for Web data

CMRCT

Fit Capture-Mark-Recapture models in continuous time.

cnagIO

Methods for reading CNAG files

cnf2freq

same Chromosome N-loci F2 frequencies

cnf2freqibdtracer

same Chromosome N-loci F2 frequencies, with IBD tracing

coalesceR

A pedagogical tool to teach the basics of coalescent theory

cobs

Constrained B-Splines (Sparse Matrix Based)

cobs99

Constrained B-splines -- outdated 1999 version

cocorresp

Co-correspondence analysis methods

codebooks

Management of Survey Data

coefficientalpha

Robust Cronbach's alpha with missing and non-normal data

cofclust

Consensus Optimization Fuzzy Clustering

COGARCH

Simulation and inferenc for COGARCH(1,1) processes

COGARCH.rm

Portfolio selection with Multivariate COGARCH(p,q) models

coin

Conditional Inference Procedures in a Permutation Test Framework

colorscience

Color Science Methods and Data

colorspace

Color Space Manipulation

colourschemes

Data-driven colour scheme mappers

commandr

Command pattern in R

CommEcol

Community Ecology Analyses

CommonJavaJars

Useful libraries for building a Java based GUI under R

CoModes

This package performs clustering for categorical dataset by using a conditional modes mixture model

CompRandFld

Composite-Likelihood Based Analysis of Random Fields

conformal

Conformal mapping from a polygon to a disk

conicfit

Algorithms for Fitting Circles, Ellipses and Conics Based on the Work by Prof. Nikolai Chernov

constants

Defines some physical constants and functions commonly used in optics, plasmonics.

contrast

A collection of contrast methods

convoi

Convex Optimization in R

copula

Multivariate Dependence with Copulas

Corbi

Collection of Rudimentary Bioinformatics Tools

cordillera

OPTICS Cordillera

corHMM

Analysis of binary character evolution

corpora

Statistics and Data Sets for Corpus Frequency Data

CorrBin

Nonparametrics with Clustered Binary and Multinomial Data

CoSeg

Cosegregation Analysis and Pedigree Simulation

coseq

Co-Expression Analysis of Sequencing Data

countreg

Count Data Regression

CoxFlexBoost

Boosting Flexible Cox Models (with Time-Varying Effects)

cRacker

R-script suite for automated processing of proteomic peptide lists

cremo

cremo: Comparative REndering of Model Outputs

CRF

Conditional Random Fields

crop

Graphics Cropping Tool

cropData

Modelling crop trial data

cropr

simulate crop growth

CrossVal

Classes and methods for cross validation of "class prediction" with microarrays or proteomics

CrossValidate

Classes and Methods for Cross Validation of "Class Prediction" with Microarrays or Proteomics

crules

Classification Rules

CSFA

Connectivity Scores with Factor Analysis

cshapes

CShapes Dataset and Utilities

csn

Closed Skew-Normal Distribution

csound

Accessing Csound functionality through R

csSAM

csSAM - cell-specific Significance Analysis of Microarrays

ctglm

ctglm

cthmm

Latent Continuous Time Markov Chains

ctm

Conditional Transformation Models

ctmcmove

Modeling Animal Movement with Continuous-Time Discrete-Space Markov Chains

ctmcMove

Modeling Animal Movement with Continuous-Time Discrete-Space Markov Chains

ctmDevel

Conditional Transformation Models

ctv

CRAN Task Views

Cubist

Rule- and Instance-Based Regression Modeling

CulturalAnalytics

Functions for statistical analysis and plotting of image properties

curve

Dynamic Systems Estimation - Curvature Extensions

cusp

Cusp-Catastrophe Model Fitting Using Maximum Likelihood

CVD

Color Vision Deficiencies

cvGWAS

Genome-wide association analysis based on predictive ability

cvm.test

Discrete Cramer von Mises Goodness-of-Fit Tests

cvrcalc

Cardiovascular Risk Calculator

daewr

Design and Analysis of Experiments with R

dagitty

Graphical Analysis of Structural Causal Models

dairy

Functions and models related to dairy production

DAMisc

Dave Armstrong's Miscellaneous Functions

DanteR

Proteomics data analysis tool

Dataset

Handling survey data in R. (official release)

data.table

Extension of data.frame

date

Functions for handling dates

DCchoice

Analyzing Dichotomous Choice Contingent Valuation Data

dcemri

A Package for Medical Image Analysis

dcemriS4

A Package for Medical Image Analysis (S4 implementation)

dcGOR

Analysis of Ontologies and Protein Domain Annotations

dChipIO

Methods for reading dChip files

dclone

Data Cloning and MCMC Tools for Maximum Likelihood Methods

DCluster

Functions for the Detection of Spatial Clusters of Diseases

DClusterm

Model-based detection of disease clusters

ddepn

Dynamic Deterministic Effects Propagation Networks: Infer signalling networks for timecourse RPPA data.

DDIwR

DDI with R

DeadCanMove

Assess how spatial roadkill patterns change with temporal sampling scheme

debias

Functions implementing MLE,its bias reduction for small samples and related issues

debug

printf-style debugging

decomp

Various functions to quantify and decompose health inequalities

DeconWK

Deconvolution by Weighted Kernels

decUpdate

Update of matrix decompositions

DeducerAlpha

Tools for aggregating scale items

DeducerANOVA

Factorial ANOVA for Deducer

DeducerPlugInScaling

Reliability and factor analysis plugin

DeducerPSY220

PSY220 Deducer Plug-In

DeducerReshape

Converts data frames from wide to long and long to wide formats

DeducerRichOutput

Rich Output Display for Deducer

DeducerSpatial

Deducer for spatial data analysis

DeducerText

Deducer GUI for Text Data

DeepCNV

Exploiting Normal Contamination to Infer Copy Number from Deep Sequencing

deepnlp

Deep Learning Neural Network Models (RNN, CNN, etc) in NLP

DEFFbinary

Compute the design effect for correlated binary data

delftfews

delftfews R extensions

DeMix

Deconvolution Models for Mixed Transcriptomes from Heterogeneous Tumor Samples

DeMixSampleData

'DeMix' Sample Data

demoniche

demoniche - spatial population dynamics

Dendrometry

Decipher Barr & Stroud FP-15 from STX Files

DengueParmEst

Parameter estimates (and real-time prediction) of a single dengue outbreak

DengueRT

Parameter Estimates and Real-Time Prediction of a Single Dengue Outbreak

DEoptimR

Differential Evolution Optimization in Pure R

depmix

Dependent Mixture Models

depmixS4

Dependent Mixture Models - Hidden Markov Models of GLMs and Other Distributions in S4

depthproc

depthproc

DepthProc

Statistical Depth Functions for Multivariate Analysis

desirability

Desirabiliy Function Optimization and Ranking

desire

Desirability functions

deSolve

Solvers for Initial Value Problems of Differential Equations ('ODE', 'DAE', 'DDE')

detect

Analyzing Wildlife Data with Detection Error

deTestSet

Test Set for Differential Equations

DetSel

A computer program to detect markers responding to selection

dfdb

Access Data Tables in a SQLite Data Base as Pseudo-Dataframes

dfdb.RODBC

Access Data Tables in an RODBC Data Base as Pseudo-Dataframes

dfoptim

Derivative-free Optimization

dgof

Discrete Goodness-of-Fit Tests

DiagnosisMed

Diagnostic test accuracy evaluation for health professionals

diagram

Functions for Visualising Simple Graphs (Networks), Plotting Flow Diagrams

dichromat

Color Schemes for Dichromats

DICOM

Import medical imaging data using the DICOM Standard

DierckxSpline

R companion to "Curve and Surface Fitting with Splines"

diffEq

Functions from the book Solving Differential Equations in R

digest

Create cryptographic hash digests of R objects

digitize

digitize : a plot digitizer in R

directlabels

Direct labels for multicolor plots in lattice or ggplot2

dirichlet

Dirichlet and Generalized Dirichlet Distribution functions

dirt

soil science related functions

diseasemapping

Modelling Spatial Variation in Disease Risk for Areal Data

diseasemappingDevel

Functions to compliment diseasemapping

dismo

Species Distribution Modeling

distr

Object Oriented Implementation of Distributions

distrDoc

Documentation for 'distr' Family of R Packages

distrEllipse

S4 Classes for Elliptically Contoured Distributions

distrEx

Extensions of Package 'distr'

DistributionUtils

Distribution Utilities

distrMod

Object Oriented Implementation of Probability Models

distrRmetrics

Distribution Classes for Distributions from Rmetrics

distrSim

Simulation Classes Based on Package 'distr'

distrTeach

Extensions of Package 'distr' for Teaching Stochastics/Statistics in Secondary School

distrTEst

Estimation and Testing Classes Based on Package 'distr'

disttree

Trees and Forests for Distributional Regression

diveMove

Dive analysis and calibration

dlm

Bayesian and Likelihood Analysis of Dynamic Linear Models

dlrm

Dynamic Linear Regression Model

dmt

Dependency Modeling Toolkit

dnamatch

A procedure for large scale contamination search

dnet

Integrative Analysis of Omics Data in Terms of Network, Evolution and Ontology

documair

Automatic Documentation for R packages

doMC

Foreach Parallel Adaptor for 'parallel'

doParallel

Foreach Parallel Adaptor for the 'parallel' Package

doRNG

Generic Reproducible Parallel Backend for foreach Loops

doSMP

Foreach parallel adaptor for the revoIPC package

doSNOW

Foreach Parallel Adaptor for the 'snow' Package

Dowd

Functions Ported from 'MMR2' Toolbox Offered in Kevin Dowd's Book Measuring Market Risk

downscale

Downscaling Species Occupancy

dpeaqms

Differential Protein Expression Analysis using Quantitative Mass Spectrometry Data (dpeaqms)

dplR

Dendrochronology Program Library in R

dpmixsim

Dirichlet Process Mixture model simulation for clustering and image segmentation

dpqrcox

The `dpqrcox' package provides d/p/q/r functions of Coxian distributions.

dr

Methods for Dimension Reduction for Regression

drawExpression

Visualising R syntax through graphics

dream

DiffeRential Evolution Adaptive Metropolis

drought

Tools for Drought Modeling and Assessment

dsample

Discretization-Based Direct Random Sample Generation

dse

Dynamic Systems Estimation (Time Series Package)

dse1

DSE (unbundled transition package).

dse2

DSE (unbundled transition package).

dsinr

Functions and datasets for the book "Data Science in R"

DSL

Distributed Storage and List

dtw

Dynamic time warping algorithms

dummy

A dummy package to ask R-Forge to install packages that I need

DWD

DWD implementation based on A IPM SOCP solver

DynTxRegime

Methods for Estimating Dynamic Treatment Regimes

e1071

Misc Functions of the Department of Statistics, Probability Theory Group (Formerly: E1071), TU Wien

earlywarnings

Early Warning Signals Toolbox for Detecting Critical Transitions in Timeseries

earthmovdist

Wrapper to the Emd-L1 library by Haibin Ling and Kazunori Okada

EasyABC

Efficient Approximate Bayesian Computation Sampling Schemes

easydb

Generic S3 Classes for Simple Database Interfaces

easyrodbcaccess

Simple Database Interface for SQLite, MySQL and MS Access

easyrodbcexcel

Simple database interface for RODBC Excel.

easyrodbcmysql

Simple Database Interface for MySQL

eat

eat

eatData

eatData

eatDesign

eatDesign

eatDev

eatDev

eatGet

eatGet

eatModel

eatModel

eatPrep

Prepare Data for IRT Analyses

eatRep

eatRep

eatRest

eatRest

eatTools

eatTools

eatTrend

Estimate National Trends in International Large-Scale Assessments

EBImage

DUMMY DUMMY DUMMY

ebimetagenomics

EBI Metagenomics Portal

EBS

Exact Bayesian Segmentation

Ecdat

Data Sets for Econometrics

Ecfun

Functions for Ecdat

ecolMod

"A Practical Guide to Ecological Modelling - Using R as a Simulation Platform"

ecomodtools

Ecological Modelling Toolbox

ecoPD

Ecologically-informed phylodiversity metrics

ecotoxicology

Methods for Ecotoxicology

ECPaysage

A set of R resources to teach landscape ecology, landscape analysis and spatial statistics

edd

expression density diagnostics

edpcr

Performs Extended Digital PCR Analysis

eefAnalytics

Analytical Package for Analysing Education Trials

eefMLM

Analytical Package for Analysing Education Trials

effects

Effect Displays for Linear, Generalized Linear, and Other Models

efflog

The causal effects for a causal loglinear model

eiwild

Ecological Inference with individual and aggregate data

electricity

Electricity market models

electronics

Electronics

elsa

Entropy-based Local indicator of Spatial Association

emissions

What the package does (short line)

EMLasso

Fit (logistic) LASSO when there is missing data in the predictors

emon

Tools for Environmental and Ecological Survey Design

ems

Epimed Solutions collection for data editing, analysis, and bechmarking of health units

EngrExpt

Data sets from "Introductory Statistics for Engineering Experimentation"

EnQuireR

A package dedicated to questionnaires

ensbiascoR

Resampling bias correction for large initial condition ensembles

Epi

A Package for Statistical Analysis in Epidemiology

epiG

DNA methylation and SNP calling for bisulfite sequencing data

epinetics

EpiNetics

epineticseq

EpiNeticSeq

EPISbigRR

Generalized Ridge Regression for Analysis of Interaction Effects

EpitopePrediction

Predict Binding Between Peptides and MHC Molecules

EricksenLeslie

numerical solution of Ericsken-Leslie equations for 1D liquid crystal cells

eRm

Extended Rasch Modeling

erpR

Event-related potentials (ERP) analysis, graphics and utility functions

ESM

Ecological Specificity Measures

espa.tools

Wrappers for the Geospatial Data Abstraction Library (GDAL) Utilities

estimate

Estimate of Stromal and Immune Cells in Malignant Tumor Tissues from Expression Data

etanalysis

Analysis of Eye-tracker data

euroformix

Package for intepretation of quantitative DNA mixtures

euroMix

Calculations for DNA mixtures

euroMixR

Calculations for DNA mixtures, only R code

events

Store and manipulate event data

EventTree

Event Trees for Hazard and Risk Analysis

evir

Extreme Values in R

evtree

Evolutionary Learning of Globally Optimal Trees

ewc

Edge-Weighted Closeness

ExactSampling

ExactSampling: risk evaluation using exact resampling methods for the k Nearest Neighbor algorithm.

exams

Automatic Generation of Exams in R

exec

Execute scripts in exec directory of packages

ExLiebeRes

Exact Liebermann/Reshnikov and Bruhn-Suhr/Krumbholz plans

ExpectedReturns

Computation of implied expected returns

expectile

Modelling of expectiles

expm

Matrix Exponential, Log, 'etc'

extendedForest

Breiman and Cutler's random forests for classification and regression

ExtremalDep

Extremal Dependence Models

EZ2

Modeling Human Response Times and Accuracy using the EZ/EZ2 Diffusion Model

fACD

Autoregressive Conditional Duration Models in R

factorAnalytics

Factor Analytics

FactorAnalytics

Functions for performing factor analysis on financial time series

factorplot

factorplot

fakeplace

Generate fake geographies

fArma

Rmetrics - Modelling ARMA Time Series Processes

fAsianOptions

Rmetrics - EBM and Asian Option Valuation

fAssets

Rmetrics - Analysing and Modelling Financial Assets

fassoc

VARIANCE COMPONENT BASED MULTI-MARKER ASSOCIATION TEST USING FAMILY AND UNRELATED DATA

fastR

Data sets and utilities for Foundations and Applications of Statistics by R Pruim

FaultTree

Fault Trees for Risk and Reliability Analysis

FaultTree.SCRAM

Interaction between FaultTree on R and SCRAM

fBasics

Rmetrics - Markets and Basic Statistics

fBonds

Rmetrics - Pricing and Evaluating Bonds

fCertificates

fCertificates - Basics of Certificates and Structured Products Valuation

fCopulae

Rmetrics - Bivariate Dependence Structures with Copulae

FD

Measuring functional diversity (FD) from multiple traits, and other tools for functional ecology

fda

Functional Data Analysis

FDboost

Boosting Functional Regression Models

fdnonpar

Methods for Multivariate or Functional Data

fEcofin

Economic and Financial Data Sets

fExoticOptions

Rmetrics - Pricing and Evaluating Exotic Option

fExpressCertificates

fExpressCertificates - Structured Products Valuation for ExpressCertificates/Autocallables

fExtremes

Rmetrics - Modelling Extreme Events in Finance

FFD

Freedom from Disease

fftrees

Fast- and Frugal Tree Analysis

fGarch

Rmetrics - Modelling Autoregressive Conditional Heteroskedasticity

FGM

Floating Grid Method

fgpt

Floating Grid Permutation Technique

fImport

Rmetrics - Importing Economic and Financial Data

FinancialInstrument

Financial Instrument Model Infrastructure for R

fincov

Methods for estimating covariance matrices

fingerprint

Functions to operate on binary fingerprint data

FinTS

Companion to Tsay (2005) Analysis of Financial Time Series

FIRMAGene

FIRMAGene - differential splicing for Affymetrix Gene 1.0 ST

fisheyeR

Fisheye and Hyperbolic-space-alike Interactive Visualization Tools in R

fishkirkko2015

Dataset of Measurements of Fish Species at Kirkkojarvi Lake, Finland

fitdistrplus

Help to Fit of a Parametric Distribution to Non-Censored or Censored Data

fitmixst4

Fitting mixture of skew t distribution

fit.models

fit.models

fitob

General solvers for the general Black-Scholes (Fokker Planck) partial differential equation (PDE) in a multi-dimensional setting with main application in finance (option pricing).

FKF

Fast Kalman Filter

FLAssess

Generic classes and methods for stock assessment models

FLBEIA

Bio-Economic Impact Assessment of Management strategies using FLR

FLCore

Core package of FLR, fisheries modelling in R.

FLEDA

Exploratory Data Analysis for FLR

FLExamples

Example datasets for FLR manuals and tutorials

FlexBayes

Flexible Bayesian Inference

flexsurv

Flexible parametric survival models

flightcallr

Classify Night Flight Calls Based on Acoustic Measurements

flock

Process Synchronization Using File Locks

FLXSA

eXtended Survivor Analysis for FLR

fMarkovSwitching

R Package for Estimation, Simulation and Forecasting of a Univariate Markov Switching Model

FME

A Flexible Modelling Environment for Inverse Modelling, Sensitivity, Identifiability and Monte Carlo Analysis

fMultivar

Rmetrics - Analysing and Modeling Multivariate Financial Return Distributions

fNonlinear

Rmetrics - Nonlinear and Chaotic Time Series Modelling

foodweb

Generating food webs

fOptions

Rmetrics - Pricing and Evaluating Basic Options

ForAI

Forecasting with Artificial Intelligence

foreach

Provides Foreach Looping Construct for R

ForensicDocument

Quantification and evaluation tools for forensic document examiners

forensim

Statistical tools for the interpretation of forensic DNA mixtures

forestFloor

Visualizes Random Forests with Feature Contributions

forestFloorStable

(Legacy version 1.5)Visualizes Random Forests with Feature Contributions

Formula

Extended Model Formulas

formulr

Miscelaneous tools to handle formulas.

fortunes

R Fortunes

fpop

Segmentation using Optimal Partitioning and Function Pruning

fPortfolio

Rmetrics - Portfolio Selection and Optimization

fPortfolioBacktest

Rmetrics - Portfolio Backtesting

fractal

Fractal Time Series Modeling and Analysis

FRAPO

Financial Risk Modelling and Portfolio Optimisation with R

freesortphi

Cramer's Phi Analysis of Freesort Data

fRegression

Rmetrics - Regression Based Decision and Prediction

freqdom

Frequency Domain Analysis for Multivariate Time Series

frontier

Stochastic Frontier Analysis

FRSstats

FRS Statistics Group R Library

FSelector

Selecting attributes

FSim

A package to search functionally similar genes

fTrading

Rmetrics - Trading and Rebalancing Financial Instruments

ftree

Fault Trees and Event Trees for Risk and Reliability Analysis

fullexampledata

Activated Region Fitting, fMRI data analysis (3D), additional dataset.

fun

Use R for Fun

funcheck

OBSOLETE: Run tests, where possible, on named optimization problem file.

Funclustering

A package for functional data clustering.

funcreg

Functional Regression Estimation

functional

Curry, Compose, and other higher-order functions

fUnitRoots

Rmetrics - Modelling Trends and Unit Roots

funphylocom

Functional traits, phylogenies, communities, simulations

fuse

Framework for Understanding Structural Errors (FUSE)

FuseBox

Combining Classifiers

fusedanova

Fused-ANOVA

fusedanova2

Fused-ANOVA

FUtils

Felix's favorite functions

FuzzyNumbers

Tools to deal with fuzzy numbers in R

fuzzySim

Fuzzy similarity in species distributions

fwi.fbp

Fire Weather Index System and Fire Behaviour Prediction System Calculations

fxregime

Exchange Rate Regime Analysis

G2Sd

Grain-size Statistics and Description of Sediment

g4n

graph for networks

gada

Genome Alteration Detection Algorithm (GADA)

gamboostLSS

Boosting Methods for GAMLSS

gamesNws

Playing games using a NWS Server

gamlss.cens

Fitting an interval response variable using gamlss.family distributions

gamlss.data

GAMLSS Data.

gamlss.demo

Demos for GAMLSS

gamlss.dist

Distributions to be used for GAMLSS modelling.

gamlss.mx

A GAMLSS add on package for fitting mixture distributions

gamlss.nl

Fitting non linear parametric GAMLSS models

gamlss.tr

Generating and fitting truncated (gamlss.family) distributions

gammadnamix

Package for intepretation of quantitative DNA mixtures

GARPFRM

Global Association of Risk Professionals: Financial Risk Manager

gazepath

Parse Eye-Tracking Data into Fixations

gcensus

Census populations and polygons

GCHC

Genetic Correlation Heterogeneity for Causality (GCHC)

gcmdiag

Growth curve modeling diagnostics

gdalUtils

Wrappers for the Geospatial Data Abstraction Library (GDAL) Utilities

gdata

Various R Programming Tools for Data Manipulation

gdistance

Distances and Routes on Geographical Grids

gdm

Create Generalised Dissimilarity Models

Gdm01

Create Generalised Dissimilarity Models

GDS

Genome-Wide Differential Splicing Detection

gdsfmt

R Interface to CoreArray Genomic Data Structure (GDS) files

geeni

gee in bounded memory, data from disk etc.

GenABEL.data

Data Used by the GenABEL Examples and Test Functions

GenAlgo

Classes and Methods to Use Genetic Algorithms for Feature Selection

geneNetBP

Belief Propagation in Genotype-Phenotype Networks

GeneralizedHyperbolic

The Generalized Hyperbolic Distribution

GeneralizedLambda

The Generalized Lambda Distribution

genoPlotR

Plot Publication-Grade Gene and Genome Maps

genutils

IRRI Geography Lab - General Utilities

geo

Draw and Annotate Maps, Especially Charts of the North Atlantic

GeoConst

Datasets and helper functions for commonly required values in geochemistry.

geoCount

Analysis and Modeling for Geostatistical Count Data

geoextras

Extras for the 'geo' package

geometry

Mesh Generation and Surface Tesselation

geonames

Interface to www.geonames.org web service

geoRExtended

An extension of the geoR package.

GeoRiskR

Data and functions for Geotechnical Risk Assessment

georob

Robust Geostatistical Analysis of Spatial Data

geosphere

Spherical Trigonometry

geospt

Geostatistical Analysis and Design of Optimal Spatial Sampling Networks

geostatsp

Geostatistical Modelling with Likelihood and Bayes

geovec

Manipulation of geographic vector (points, lines, polygons) data

getMODIS

Utility package for creating or updating a local user-defined subsets of the global MODIS grid data online archive. Pre-processing functionalities for MODIS grid data using MODIS Reporjection Tool (MRT)

getopt

C-like getopt behavior.

ggene

Semivariogram and Exploratory Spatial Analysis of Genetic Data

ggplotFL

Using ggplot2 in FLR

ghyp

A package on the generalized hyperbolic distribution and its special cases

Gibi

What the package does (short line)

Gifi

Gifi Methods for Categorical Multivariate Analysis

glba

General Linear Ballistic Accumulator Models

gldist

An Asymmetry-Steepness Parameterization of the Generalized Lambda Distribution.

glmBfp

Bayesian Fractional Polynomials for GLMs

glmertree

Generalized Linear Mixed Model Trees

glmmADMB

Generalized Linear Mixed Models using 'AD Model Builder'

glmmBUGS

Generalised Linear Mixed Models with BUGS and JAGS

glmmixedlasso

Generalized Linear Mixed Models with Lasso

glmx

Generalized Linear Models Extended

globalboosttest

Testing the additional predictive value of high-dimensional data

glogis

Fitting and Testing Generalized Logistic Distributions

GLoMo

Naive General Location Model

gloptim

Global Optimization Wrapper to Call a Variety of Solvers

glucpack

glucpack

gMCP

Graph Based Multiple Comparison Procedures

gmkin

Graphical User Interface for Fitting Kinetic Models to Chemical Degradation Data

gmm

Generalized Method of Moments and Generalized Empirical Likelihood

gmpm

Generalized Multilevel Permutation Models

gnmf

Generalized Non-Negative Matrix Factorization Based on Renyi Divergence

gof

Model-diagnostics based on cumulative residuals

gogarch

Generalized Orthogonal GARCH (GO-GARCH) models

gpairs

gpairs: The Generalized Pairs Plot

GPArotation

GPA Factor Rotation

gplots

Various R Programming Tools for Plotting Data

Gqr

Determine knots and weights for Gaussian quadrature rules

gr2

Graphical R$^2$

gradientForest

Random Forest functions for the Census of Marine Life synthesis project.

grainscape

Grains of connectivity and minimum planar graph modelling of landscape connectivity (Windows only)

graphicsQC

Quality Control for Graphics in R

gRaviopt

What the package does (short line)

gravy

Gradient Analysis of Vegetation

gRbase

A package for graphical modelling in R

gRc

Inference in Graphical Gaussian Models with Edge and Vertex Symmetries

gRchain

Fitting Chain Graph Models

greenbrown

Land Surface Phenology and Trend Analysis

gregmisc

Greg's Miscellaneous Functions

Grho

Grho parameters for asymptotic regression

gridDebug

Debugging 'grid' Graphics

gridExtra

functions in Grid graphics

gridgame

A game framework for R

gridGraphviz

Drawing Graphs with 'grid'

gridSVG

Export 'grid' Graphics as SVG

grImport

Importing Vector Graphics

grndata

Synthetic Expression Data for Gene Regulatory Network Inference

GRTS

Spatially balanced sampling based on GRTS

gsDesign

Group Sequential Design

GSEArot

GSEA rotation

GSIF

Global Soil Information Facilities

gslcca

Generalized Semi-Linear Canonical Correlation Analysis

gsmoothr

Smoothing tools

gsod

obtain daily weather data

gstat

Spatial and Spatio-Temporal Geostatistical Modelling, Prediction and Simulation

gsymbols

Grid-based symbols

Guerry

Maps, data and methods related to Guerry (1833) "Moral Statistics of France"

GUTS

Fast Calculation of the Likelihood of a Stochastic Survival Model

GVAR

Vector Error Correction Model (VECM), VECM with exogenous I(1) variables, Global VAR (GVAR)

GWAtoolbox

GWAS Quality Control

gWidgets

gWidgets API for building toolkit-independent, interactive GUIs

gWidgetsManipulate

port of RStudio's manipulate package using gWidgets

gWidgetsrJava

Toolkit implementation of gWidgets for rJava

gWidgetstcltk

Toolkit implementation of gWidgets for tcltk package

gWidgetsWWW

Toolkit implementation of the gWidgets API for use with web pages

gWidgetsWWW2

Toolkit implementation of the gWidgets API for use with web pages

HaarSeg

HaarSeg

HadoopStreaming

Utilities for using R scripts in Hadoop streaming

hafroAssmt

Hafro Assessment Toolbox

HaploSurvival

Modelling of haplo-effects for survival data, including competing risks. Effect of haplomatch for BMT studies.

hawkes

Hawkes process simulation and calibration toolkit

Hawkes

Hawkes

hbiclust

Hierarchical Biclustering

HCgglasso

Group-Lasso with Hierarchical Clustering

hdi

High-Dimensional Inference

hdlm

Fitting High Dimensional Linear Models

hdm

High-Dimensional Metrics

HDPenReg

High-Dimensional Penalized Regression

HDR

Processing of hyperspectral reflectance data

helloJavaWorld

Hello Java World

hepi

Functions for estimating hedonic elementary price indices

heplots

Visualizing Hypothesis Tests in Multivariate Linear Models

herblabel

Making Labels for Herbarium Specimens in RTF and More

hgam

High-dimensional Additive Modelling

hglm

Hierarchical Generalized Linear Models

hglm.data

Data for The hglm Package

HIBAG

HIBAG -- HLA Genotype Imputation with Attribute Bagging

highfrequency

Tools for Highfrequency Data Analysis

highlight

Syntax highlighter

highriskzone

Determining and Evaluating High-Risk Zones

hisemi

Hierarchical Semiparametric Regression of Test Statistics

HistData

Data Sets from the History of Statistics and Data Visualization

HistogramTools

Utility Functions for R Histograms

HITXML

Planning tools for ion beam therapy

hive

Hadoop InteractiVE

h.likelihood

Statistical Modeling and Inference via Hierarchical Likelihood

hmmr

Data and examples package accompanying the book 'HMMs with R'

HMSC

Hierarchical modelling of species community

Holidays

Holiday and Half-Day Data, for Use with the 'TimeWarp' Package

hpcwld

High Performance Cluster Models Based on Kiefer-Wolfowitz Recursion

HTDA

HTDA (High Throughput Data Analysis)

htmltools

R Tools for Producing HTML (Base64 Coding and R Interface to the tth/ttm TeX to HTML Translator)

HTSCluster

Clustering High-Throughput Transcriptome Sequencing (HTS) Data

HTSDiff

Differential Analysis of RNA-Seq Data with Poisson Mixture Models

hubbell

Functions for Hubbell's Grand Unified Theory

hwriter5

hwriter5: Writing HTML5 from R

HybridMC

Implementation of the Hybrid Monte Carlo and Multipoint Hybrid Monte Carlo sampling techniques

hydroEFS

Hydrological Event Finding and Summarising (hydroEFS).

hydroMet

Meteorological Data for Hydrological Modeling

HyperbolicDist

The hyperbolic distribution

hypergsplines

Bayesian model selection with penalised splines and hyper-g prior

hyperSpec

Work with Hyperspectral Data, i.e. Spectra + Meta Information (Spatial, Time, Concentration, ...)

hyperSpecGUI

Graphical interface for hyperSpec package, includes interactive plots

IBData

IB Real-time Data package

IBDhaploRtools

Functions for the Analysis of IBD Haplo Output.

IBDlabels

Convert between different IBD-state labelling schemes

IBDLabels

Convert Between Different IBD-State Labelling Schemes.

ibmpm

Individual-based metapopulation model

ica4fts

ica4fts package

icav

IC-ac

ICC

Functions facilitating the estimation of the Intraclass Correlation Coefficient

icpsrmsda

Optimal Linearizing Transformations for Multivariate Data

idbg

R debugger

ifctools

Italian fiscal code miscellaneous utilities

ifrogs

Finance routines developed by the IGIDR Finance Research Group.

ifs

Iterated Function Systems

ifultools

Insightful Research Tools

IGIR

Integrative network Graphic Engine Interface for R

IHA

This package implements The Nature Conservancy's Indicators of Hydrologic Alteration software in R.

imad

Iteratively Re-weighted Multivariate Alteration Detection (iMAD)

imagemap

Create html imagemaps

imguR

Share plots using the imgur.com image hosting service

immunoassay

Functions for working with immunoassay data.

INBOtheme

Themes for ggplot2

infeR

A pedagogical tool to teach the basics of inference in population genetics

inference

Functions to extract inferential values of a fitted model object

INLABMA

Bayesian Model Averaging with INLA

inlaDevel

Development files for INLA

inlinedocs

Convert inline comments to documentation

inspectr

Storing, manipulating and analysis spectroscopy and associated data in R.

int64

64 bit integer types

IntClust

Integrated Data Analysis via Clustering

integIRTy

Integrating Multiple Modalities of High Throughput Assays Using Item Response Theory

IntegratedJM

Joint Modelling of the Gene-Expression and Bioassay Data, Taking Care of the Effect Due to a Fingerprint Feature

intergraph

Coercion routines for network data objects in R

intervals

Tools for working with points and intervals

intReg

Interval Regression

IntroCompFinR

Introduction to Computational Finance in R

inum

Interval and Enum-Type Representation of Vectors

ipeds

Integrated Postsecondary Education Data System (IPEDS) Access

ipeglim

Imprecise Inferential Framework on Statistical Reasoning

IPMpack

Builds and analyses Integral Projection Models (IPMs).

ipred

Improved Predictors

IPSUR

Introduction to Probability and Statistics Using R

irt

irt. Spady's Item Response Model

IsoGene

Order-Restricted Inference for Microarray Experiments

IsoGeneGUI

A graphical user interface to conduct a dose-response analysis of microarray data

IsolationForest

Isolation Forest

isotone

Active Set and Generalized PAVA for Isotone Optimization

issb

R code associated with the book chapter "Simulation of stochastic kinetic models"

isuR

Introducing statistics using R

iterators

Provides Iterator Construct for R

itertools

Iterator Tools

ithir

Functions and Algorithms Specific to Pedometrics

jacobi

Jacobi Rotations

JBTools

Misc Small Tools and Helper Functions for Other Code of J. Buttlar

JDEoptim

j-Differential Evolution Optimization

jjplot

The jjplot plotting library for making beautiful plots fast and simple.

jobqueue

Generic Asynchronous Job Queue

jointseg

Joint segmentation of multivariate (copy number) signals

jss

Journal of Statistical Software Utilities

khb

KHB: Comparing nonlinear regression models

kimisc

Kirill's miscellaneous functions

kinfit

Routines for Fitting Kinetic Models to Chemical Degradation Data

klaR

Classification and visualization

klausuR

Multiple Choice Test Evaluation

kmeansstep

stepwise k-means cluster model selection

Kmer

Computes a matrix of K-mer counts.

kmndirs

k-Mean-Directions Algorithm

knapsack

Knapsack Routines

KnockKnockJokes

Knock-Knock Jokes

ks.test

Proposed Revision to stats::ks.test()

labeling

Axis Labeling

labeltodendro

Convert labels or tables to a dendrogram

labstatR

Libreria Del Laboratorio Di Statistica Con R

Lahman

Sean Lahman's Baseball Database

lassogrp

Lasso Regression including group lasso and adaptive lasso

lattice

Trellis Graphics for R

latticeExtra

Extra Graphical Utilities Based on Lattice

lava

Latent Variable Models

lava.mixture

Mixtures of Linear Latent Variable Models

lava.tobit

LVM with censored and binary outcomes

LazyMLVA

LazyMLVA

lbiassurv

Length-biased correction to survival curve estimation.

lcmix

Layered and chained mixture models

LDExplorer

Efficient Whole-Genome LD Based Haplotpe Block Recognition

LDOD

Finding Locally D-optimal optimal designs for some nonlinear and generalized linear models.

LeerFotos

Extrae la informacion de los metadatos de imagenes .jpg

lethal

Compute lethal doses (LD) with confidence intervals

lfstat

Calculation of Low Flow Statistics for Daily Stream Flow Data

libamtrack

Computational Routines for Proton and Ion Radiotherapy

libcoin

Linear Test Statistics for Permutation Inference

LIM

Linear Inverse Model examples and solution methods

limSolve

Solving Linear Inverse Models

linLIR

linear Likelihood-based Imprecise Regression

linprog

Linear Programming / Optimization

lisp

List-processing Ã la SRFI-1

lm.br

Linear Model with Breakpoint

lmeSplines

Add smoothing spline modelling capability to nlme.

lmodel2

Model II Regression

lmsqreg

LMS (Cole-Green Stat in Med 1992 quantile regression)

lmSubsets

Exact linear subset regression

lnar

Inference for stochastic kinetic genetic networks.

LncDM

The Different Methylation Sites, Elements and Regions of lncRNA

loa

Lattice Options and Add-Ins

localEM

Nonparametric Modelling of Spatial Risk for Areal Disease Data

locClass

Collection of Local Classification Methods

locClassData

Collection of Artificial Classification Problems

Lock5Data

Datasets for "Statistics: UnLocking the Power of Data"

log10

Decimal log plotting in two and three dimensions

logging

R logging package

logistic4p

Logistic Regression with Misclassification in Dependent Variables

logisticDx

Diagnostic tests for logistic regression models

LogisticDx

Diagnostic Tests for Models with a Binomial Response

logitnorm

Functions for the Logitnormal Distribution

loglognorm

Double log normal distribution functions

logopt

Log optimal (universal) portfolios

lokern

Kernel Regression Smoothing with Local or Global Plug-in Bandwidth

loret

Logistic Regression Trees for Multinomial and Ordinal Responses

lpridge

Local Polynomial (Ridge) Regression

lpSolveAPI

R Interface to 'lp_solve' Version 5.5.2.0

lqmm

Linear Quantile Mixed Models

lshorth

The Length of the Shorth

lsmeans

Calculates the lsmeans and their variances for lm, gls,lme,mer,lmer and glmer models

LSPM

The Leverage Space Portfolio Modeler

luck

Generalized iLUCK models

mada

Meta-Analysis of Diagnostic Accuracy

MADAM

This package provides some basic methods for meta-analysis

MAMI

Model Averaging and Model Selection after Multiple Imputation

mapmisc

Utilities for Producing Maps

mapoland

Maps of Poland for data visualization and graphics

maptools

Tools for Reading and Handling Spatial Objects

march

Markov Chains

marelac

Tools for Aquatic Sciences

marelacTeaching

Datasets and tutorials for use in aquatic sciences

mas1343

MAS1343: Introduction to statistical computing

mas2316

MAS2316: Introduction to regression and modelling

mas3321

Bayes normal linear model and basic MCMC

MassAtChance

Implementation of the Mass at Chance models for subliminal priming accuracy data

mastermix

Procedure for deconvolving, weight-evidence and database search using STR DNA mixtures

MatchImage

likelihood-based image id code

matchingMarkets

Analysis of Stable Matchings

maticce

Mapping Transitions in Continuous Character Evolution

Matrix

Sparse and Dense Matrix Classes and Methods

MatrixModels

Modelling With Sparse and Dense Matrices

matrixStats

Methods that apply to rows and columns of a matrix

maxLik

Maximum Likelihood Estimation and Related Tools

mc2d

Tools for Two-Dimensional Monte-Carlo Simulations

MCIBD

Monte Carlo Identity-By-Descent Matrix Estimation

mclogit

Mixed Conditional Logit Models

mco

Multi criteria optimization algorithms and related functions

mcplR

Multiple Cue Probability Learning in R

mcp.project

Applies different False Discovery Rate controlling procedures

mcsSubset

MCS: Variable Subset Selection in Linear Regression

MDP

Markov Decision Processes (MDPs) in R

MDSGUI

A GUI for interactive MDS in R

MeDiChI

MeDiChI ChIP-chip deconvolution library

MEET

MEET: Motif Elements Estimation Toolkit

mefa

Multivariate Data Handling in Ecology and Biogeography

mefa4

Multivariate Data Handling with S4 Classes and Sparse Matrices

MELON

Methylation Enriched LOci Normalization (MELON) for genome-wide DNA methylation experiments

memgene

Spatial pattern detection in genetic distance data

memisc

Tools for Management of Survey Data and the Presentation of Analysis Results

MEMSS

Data sets from Mixed-effects Models in S

messageQueue

Allow R to communicate with message queues

meta4diag

Meta-Analysis for Diagnostic Test Studies

MetABEL

Meta-analysis of genome-wide SNP association results

metapop

Metapopulations and Incidence Functions

metaRNASeq

Meta-analysis of RNA-seq data

metatest

Fit and test metaregression models

meteo

Spatio-Temporal Analysis and Mapping of Meteorological Observations

MethComp

Analysis of Method Comparison studies

metlab

The Metrics Laboratory

metRology

Support for Metrological Applications

metrumrg

Pharmacometric Tools for Data Preparation, Modeling, Simulation, and Reporting

mets

Analysis of Multivariate Event Times

MFTSR

Modelling Financial Time Series with R

mGSZ

Gene set analysis based on GSZ-scoring function and asymptotic p-value

MHTrajectoryR

Bayesian Model Selection in Logistic Regression for the Detection of Adverse Drug Reactions

mhurdle

Multiple Hurdle Tobit Models

mi

Missing Data Imputation and Model Checking

micEcon

Microeconomic Analysis and Modelling

micEconAids

Demand Analysis with the Almost Ideal Demand System (AIDS)

micEconCES

Analysis with the Constant Elasticity of Substitution (CES) function

micEconDist

Microeconomic Production Analysis with Distance Functions

micEconNP

Microeconomic Analysis with Non-Parametric Methods

micEconSNQP

Symmetric Normalized Quadratic Profit Function

mif2

MIF2 algorithm development package

migui

Graphical User Interface of the mi Package

minqa

Derivative-free optimization algorithms by quadratic approximation

miRtest

Combined miRNA- and mRNA-Testing

miscTools

Miscellaneous Tools and Utilities

missMDA

Handling missing values with/in multivariate data analysis (principal component methods)

mitools

Tools for multiple imputation of missing data

MixAll

Clustering using Mixture Models

MixCluster

MixCluster performs the clustering of mixed-type data sets (data sets with different natures of variables) with missing values.

MixedTS

Mixed Tempered Stable Distribution

mixexp

Design and Analysis of Mixture Experiments

MixGHD

Model Based Clustering, Classification and Discriminant Analysis Using the Mixture of Generalized Hyperbolic Distributions

mixlm

Mixed model ANOVA for lm and lmer

mixPHM

Mixtures of proportional hazard models.

mixstock

functions for mixed stock analysis

MixtureDistribution

Mixture Distribution

mixvarselect

Mixture of expert modelling with variable selection using penalization

mkin

Kinetic Evaluation of Chemical Degradation Data

mlearning

Machine learning algorithms with unified interface and confusion matrices

mlfm

Semiparametric multilevel frailty models, estimated via EMPL method

MLGL

Multi-Layer Goup-Lasso

mlmRev

Examples from Multilevel Modelling Software Review

mlogit

multinomial logit model

mlt

Most Likely Transformations

mmap

Map Pages of Memory

MmgraphR

Graphing for Markov Models and Hidden Markov Models

mmSAR

mmSAR is an R package for the modelling of the Species-Area Relationship (SAR).

mnbem

Matrix Normal Block EM

ModelDataComp

Model-Data Comparison

Modeler

Classes and Methods for Training and Using Binary Prediction Models

modelfree

Model-free estimation of a psychometric function

ModelGood

Validation of risk prediction models

modelObj

A Model Object Framework for Regression Analysis

modEvA

Model Evaluation and Analysis

modi

Multivariate outlier detection and imputation for incomplete survey data

MODIS

MODIS Acquisition and Processing

modiscloud

R tools for processing Level 2 Cloud Mask products from MODIS

modisws

Interface to the web processing service for MODIS data

mombf

Moment and Inverse Moment Bayes Factors

MonetDB.R

Connect MonetDB to R

mosaicManip

Project MOSAIC (mosaic-web.org) manipulate examples.

MotilityLab

Quantitative Analysis of Motion

motmot

Models of Trait Macroevolution on Trees

move

Visualizing and Analyzing Animal Track Data

MPAgenomics

Multi-Patient Analysis of Genomic Markers

MPAlars

lars algorithm

mpc

MPC - Multiple Precision Complex Library

mpcbs

Multi-sample and Multiplatform CNV.

MPDiR

Data sets and scripts for Modeling Psychophysical Data in R.

mpia

Meaningful Purposive Interaction Analysis

mpifarm

Farm out a sequence of jobs to a cluster of slaves using MPI.

MplusAutomation

Automating Mplus Model Estimation and Interpretation

mpm

Multivariate Projection Methods

mpmi

Mixed-pair mutual information estimators

mpmm

Marginal Product Mixture Model for Relational Event Data

MPsychoR

Modern Psychometrics with R

MPTinR

Analyze Multinomial Processing Tree Models

MPTinR2

Analyze Multinomial Processing Tree Models

mqext

M-quantile extension of the mixed linear model

mqqc

Quality control of LCMS derived proteomic data

mrpdata

Data for Multilevel Regression and Poststratification

MRPP

Multiresponse permutation procedure and its variable importance and variable selection methods.

MrPzurich2013

MrP functions for MA class Zurich 2013

msap

Statistical analysis for Methylation-sensitive Amplification Polymorphism data

MSDI

Multivariate Standardized Drought Index (MSDI)

msim

This package implements the method of simulated moments for the GLMM logit mixed model as described in Jiang's (1998) article, Consistent Estimators in Generalized Linear Mixed Models.

msimul

Utilities for Simulation in Monte Carlo Experiments

mskf

Markov Switching Kalman Filter

msm

Multi-State Markov and Hidden Markov Models in Continuous Time

MSToolkit

The MSToolkit library for clinical trial design

mtcreator

Creating MAGE-TAB files using mtcreator

multcomp

Simultaneous Inference in General Parametric Models

MultiABEL

Multi-Trait Genome-Wide Association Analyses

multiCA

Multinomial Cochran-Armitage Trend Test

multiplier

Multiplier Analysis for SAM and FSAM

multxpert

Common Multiple Testing Procedures and Gatekeeping Procedures

MuMIn

Multi-Model Inference

munfold

Metric Unfolding

munsellinterpol

Interpolate Munsell Renotation Data from Hue/Chroma to CIE/sRGB

mutils

Basic Utilities for Data Management, Graphics, and Simulation

mutoss

Unified multiple testing procedures

mvabund

Statistical Methods for Analysing Multivariate Abundance Data

MvBinary

Modelling Multivariate Binary Data with Blocks of Specific One-Factor Distribution

mvinfluence

Influence Measures and Diagnostic Plots for Multivariate Linear Models

mvProbit

Multivariate Probit Models

mvtnorm

Multivariate Normal and t Distributions

myFuncs

Colins Usefull functions

myplotrix

Various plotting functions

mzmatch.Data

Orbitrap Mass Spectrometry raw data example files

mzmatch.R

mzmatch and PeakML integration for XCMS.

nacopula

Nested Archimedean Copulas

nacopulaNew

Nested Archimedean Copulas

nadiv

Functions to construct non-additive genetic relatedness matrices

NameNeedle

NameNeedle package

namespace

Provide namespace managment functions not (yet) present in base R

nbpMatching

Functions for Optimal Non-Bipartite Matching

nccMLE

MLE for nested case cohort and case-cohort designs

ncdf.tools

Easier 'NetCDF' File Handling

nclbayes

Functions, Demos and Examples of Bayesian Analysis and Basic MCMC

nclRadvanced

nclRadvanced

nclRcourses

Functions for R courses at Newcastle University

nclRefficient

nclRefficient

nclRggplot2

nclRggplot2

nclRintroduction

A nclRintroduction

nclRintroductionB

nclRintroductionB

nclRmodelling

nclRmodelling

nclRpackage

A package for the Newcastle University R courses.

nclRprogramming

nclRprogramming

nclRprogrammingB

nclRprogrammingB

ndvits

NDVI Time series extraction and analysis

nea

Network Enrichment Analysis

neaGUI

A user friendly R package to perform the network enrichment analysis (NEA).

needleman.wunsch

Needleman Wunsch computation

neotoma

A Package to access the Neotoma Paleoecological Database using an API.

nephro

Biostatistics utilities for nephrology

netbenchmark

Benchmarking of several gene network inference methods

NetIndices

Estimating network indices, including trophic structure of foodwebs in R

netmes

Exploratory Analysis of Gene Networks with Netmes, An R package for network-based measures

NetSim

A Social Networks Simulation Tool in R

network

Classes for Relational Data

newboost

New boosting algorithms

NewmanOmics

Extending the Newman Studentized Range Statistic to Transcriptomics

nhanesaccel

Process Accelerometer Data from NHANES 2003-2006

nhanesdata

Contains data from continuous NHANES (years 1999-2012).

nicholsonppp

Evolution simulation and classification

NiLeDAM

Monazite Datation for the NiLeDAM team

NISTO

Nonlinear least squares and function minimization examples from NIST

NISTopt

Nonlinear least squares examples from NIST in form of functions for optim() and optimx()

NISTunits

Fundamental Physical Constants and Unit Conversions from NIST

nlcv

Nested Loop Cross Validation

nlme2test

Testing pdKroneckeR class in nlme package.

nlmeU

Datasets and utility functions enhancing functionality of nlme package.

nlmeUpdK

New pdMat class: pdKronecker (prototype version described in Galecki, Burzykowski (2013) book)

nlmrt

Functions for Nonlinear Least Squares Solutions

nloptwrap

Wraps solvers in Package nloptr

nlraa

Non-linear regression for agricultural applications

nlsr

Functions for Nonlinear Least Squares Solutions

nlstools

Tools for nonlinear regression diagnostics

NlsyLinks

Utilities and kinship information for research with the NLSY

NMOF

Numerical Methods and Optimization in Finance

nnetpredint

Prediction Intervals of Multi-Layer Neural Networks

NonDecompGraph

NonDecomposable Graph

nonlinearAnalysis

R package for nonlinear time series analysis

nopp

Nash Optimal Party Positions

nor1mix

Normal (1-d) Mixture Models (S3 Classes and Methods)

nordklimdata1

Dataset for Climate Analysis with Data from the Nordic Region

norm

Analysis of multivariate normal datasets with missing values

NormalLaplace

The Normal Laplace Distribution

npde

Normalised prediction distribution errors for nonlinear mixed-effect models

npFrontier

Non-Parametric and Semi-Parametric Stochastic Frontier Analysis

NRAIA

Data sets from "Nonlinear Regression Analysis and Its Applications"

NSA

Post-normalization of total copy numbers

nspack

Utility functions only useful on computers accessible to Nick Sabbe

nucim

Nucleus imaging

numbers

Number-Theoretic Functions

numDeriv

Accurate Numerical Derivatives

NumDfr

Provide a performant alternative to data.frame wrt factors

numericalecon

Numerical Methods for Economists

nwfscAgeingError

Ageing error

nwfscDeltaGLM

Bayesian delta-GLM package for constructing indices of CPUE data

nwfscMapping

Mapping functions for NWFSC

nwfscNLTS

Non-linear time series

nwfscSurveyCode

What the package does (short line)

obsSens

Sensitivity analysis for Observational studies.

OceanView

Visualisation of Oceanographic Data and Model Output

odeintr

C++ ODE Solvers Compiled on-Demand

odfWeave

Sweave processing of Open Document Format (ODF) files

OMBRE

What the package does (short line)

omnr.gillnet

Gillnet size selectivity analysis

Oncotree

Estimating oncogenetic trees

oompaBase

Class Unions, Matrix Operations, and Color Schemes for OOMPA

oompaData

Data to Illustrate OOMPA Algorithms

opefimor

Option Pricing and Estimation of Financial Models in R

OpenRepGrid

Tools to analyse repertory grid data

opentick

R API to opentick databases

operators

Additional operators and utilities for R

opm

Analysing Phenotype Microarray and Growth Curve Data

opmdata

OmniLog(R) Phenotype Microarray Example Data

opmextra

Additional Functions for Analysing OmniLog(R) Phenotype Microarray Data

optfntools

Tools for assisting the preparation and testing of objective functions for optimization.

optimgui

EXPERIMENTAL: A GUI program to assist optimization problems in R

optimr

A Replacement and Extension of the 'optim' Function

optimrx

Expanded Replacement and Extension of the 'optim' Function

optimx

A Replacement and Extension of the 'optim' Function

optimz

A Replacement and Extension of the 'optim' Function

optparse

Command line option parser.

optplus

A wrapper for optimization methods (function minimization with at most bounds and masks).

optreplace

Trial package to replace optim() function with better codes

OralHygiene

Loads the Gingival epithelial cell line ExpressionSet object

ORCME

Order Restricted Clustering for Microarray Experiments

orddata

Generation of Artificial Ordinal and Binary Data

orderbook

Orderbook visualization/Charting software

ordiconsensus

Consensus of canonical ordinations through the canonical redundancy analysis

ordinal

Regression Models for Ordinal Data

OrgMassSpecR

Organic Mass Spectrometry

OriGen

Fast Spatial Ancestry via Flexible Allele Frequency Surfaces

oro.asl

Rigorous - Aterial Spin Labelling

oro.dicom

Rigorous - DICOM Input / Output

oro.dti

Rigorous - Diffusion Tensor Imaging

oro.nifti

Rigorous - NIfTI+ANALYZE+AFNI Input / Output

oro.pet

Rigorous - Positron Emission Tomography

orthogonalsplinebasis

Orthogonal Bspline Basis Functions

osmar

OpenStreetMap and R

ouch

Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses

OvarianData

Ovarian Cancer TCGA Data

p3d

Plot 3d data and fitted surfaces

pack

Convert values to/from raw vectors

packfor

Forward Selection with permutation (Canoco p.46)

PairTrading

classical pair trading based on cointegration in finance

paleoPhylo

Biodiversity Analyses in a Paleontological and Phylogenetic Context

papeR

A toolbox for writing Sweave or other LaTeX-based papers and reports

ParallABEL

Parallel of Genome-Wide Association function

ParallelStructure

function to run parallel jobs in STRUCTURE

parfm

Parametric Frailty Models

parma

Portfolio Allocation and Risk Management Applications

parsec

PARtial orders in Socio-EConomics

parser

Detailed R source code parser

partDSA

Partitioning Using Deletion, Substitution, and Addition Moves

party

A Laboratory for Recursive Partytioning

partykit

A Toolkit for Recursive Partytioning

pasmae

What the package does (short line)

patches

Collection of hot patches for R

patchwork

Allele-specific Copy Number Analysis of whole genome data

patchworkCG

Allele-specific Copy Number Analysis of CompleteGenomics Whole Genome data

patchworkData

Data for patchwork package.

paternity

Paternity tests using SNPs

pathview

a tool set for pathway based data integration and visualization

pautocorr

Testing Autocorrelation and Partial Autocorrelation Through Bootstrap and Surrogate Methods

pawacc

Physical activity with accelerometers

pbapply

Adding Progress Bar to '*apply' Functions

pcalg

Methods for Graphical Models and Causal Inference

PCDimension

Finding the Number of Significant Principal Components

PCLRLib

What the package does (short line)

PCM

Cloud and snow discrimination on AVHRR imagery

pco

Panel Cointegration Tests

pcurve

Principal curve analysis

pd.081229.hg18.promoter.medip.hx1

Platform Design Info for NimbleGen 081229_hg18_promoter_medip_hx1

pd.2006.07.18.mm8.refseq.promoter

Platform Design Info for NimbleGen 2006-07-18_mm8_refseq_promoter

pd.2006.10.31.rn34.refseq.promoter

Platform Design Info for NimbleGen 2006-10-31_rn34_refseq_promoter

pd.atdschip.tiling

Platform Design Info for Affymetrix Atdschip_tiling

pd.charm.hg18.example

Platform Design Info for the example charmData dataset

pdCluster

Partial Discharge Clustering

pder

panel data econometrics with R

pd.feinberg.hg18.me.hx1

Platform Design Info for the CHARM DNA methylation microarray

pd.feinberg.mm8.me.hx1

Platform Design Info for NimbleGen feinberg_mm8_me_hx1

pdfutils

PDF ultilities based on the PDF Clown Java library

pedigreemm

Pedigree-based mixed-effects models

pedigreeTools

Tools for handling pedigrees

PeerPerformance

Peer performance analysis in R

Peirce

Functions for removing outliers, with illustrations

pems

tools for the analysis and visualisation of pems data

pems.utils

Portable Emissions (and Other Mobile) Measurement System Utilities

PerFit

Person Fit

PerformanceAnalytics

Econometric Tools for Performance and Risk Analysis

p.exact

Exact P-values for Genome-Wide Association Analyses in Inbred Populations

pfda

Paired Functional Data Analysis

PFIM

Pharmacokinetic/Pharmacodynamic Fisher Information Matrix

pgfSweave

Quality speedy graphics compilation and caching with Sweave

phenofun

Automated Processing of Webcam Images for Phenological Classification

phenopix

Process Digital Images of a Vegetation Cover

phrapl

Phylogeography using Approximate Likelihood

phtt

Panel Data Analysis with Heterogeneous Time Trends

phyext

An extension of some of the classes in phylobase. Tree objects now support subnodes on branches

phylobase

Base package for phylogenetic structures and comparative data

PhyloOrchard

Important and/or useful phylogenetic datasets

phyloRcppExamples

Examples of phylogenetic computations with Rcpp

PhysioBankR

PhysioBank R interface

Pi

Leveraging Genetic Evidence to Prioritise Drug Targets at the Gene, Pathway and Network Level

PI

Networking Genetic Evidence to Prioritise Drug Targets at the Gene, Pathway and Network Level

pi0

Estimating the proportion of true null hypotheses for FDR

picante

R tools for integrating phylogenies and ecology

Piet

DNA CNV analysis tools based on fused lasso type of model

pimdevel

Probabilistic Index Models

pimold

Probabilistic Index Models

pivotals

Functions implementing pivotal Monte Carlo methods

pkgmaker

Package development utilities

pkgutils

Utilities for Creating R Packages

PKPDa

Examples of PK/PD analysis.

PKPDx

Examples of PK/PD analysis for one subject using R, SAAM2

plantbreeding

Analysis and visualization of data from plant breeding and genetics experiments

playitbyr

Representing and exploring data through sound

plm

Linear Models for Panel Data

plot3D

Plotting Multi-Dimensional Data

plot3Drgl

Plotting Multi-Dimensional Data - Using 'rgl'

plotGoogleMaps

Plot Spatial or Spatio-Temporal Data Over Google Maps

plottools

Tools for plotting with style

plsgenomics

PLS Analyses for Genomics

plugdensity

Plug-in Kernel Density Estimation

plutils

Tools for plotting with style

pmg

Poor Man's GUI

Pmisc

Various Utilities for knitr and inla

pmoments

Partial Moments

pnl

Profit and Loss calculation for financial instruments and portfolio's.

Policount

Local Polynomial Non Parametric Regression

polnet

Analysis of Political Networks.

polrep

Calculate Political Representation Scores

Polychrome

Qualitative Palettes with Many Colors

polycor

Polychoric and Polyserial Correlations

polySegratio

Simulate and test marker dosage for dominant markers in autopolyploids

polySegratioMM

Bayesian mixture models for marker dosage in autopolyploids

pomp

Statistical Inference for Partially Observed Markov Processes

poplab

Population Lab

popmoments

Population-level moments

POT

Generalized Pareto Distribution and Peaks Over Threshold

pplane

Phase plane plots of 2D nonlinear systems

ppstat

Point Process Statistics

pr2

Predictive R-squared

pracma

Practical Numerical Math Functions

PredictABEL

Assessment of risk prediction models

predIntervals

predIntervals

prefmod2

Paired Comparison Models for Preferences

prepRISA

prepRISA

PreProcess

Basic Functions for Pre-Processing Microarrays

PricingMixedTS

Option Pricing with exponential MixedTS process

primprod

Modelling Primary production based on P-I curves

prob

Elementary Probability on Finite Sample Spaces

probdistr

Handbook on Probability Distributions

ProbeAnnotator

Faste Gene Annotation in R

processdata

Process Data

profdpm

Profile Dirichlet Process Mixtures

profileModel

Tools for profiling inference functions for various model classes

ProstateData

Data to Illustrate the Tail-Rank Statistic

prr

generalized probabilistic range ranker

pseudoRNG

Package for pseudo random number generation.

PSM

Non-Linear Mixed-Effects modelling using Stochastic Differential Equations.

PST

Probabilistic Suffix Trees and Variable Length Markov Chains

psychobench

Supplementary package "(Psycho-)Analysis of Benchmark Experiments"

psychotree

Recursive Partitioning Based on Psychometric Models

psytabs

Produce well-formatted tables for psychological research

ptinpoly

Point-In-Polyhedron Test (2D and 3D)

punitroots

Unit Roots in Panels of Time Series

PVAClone

Population Viability Analysis with Data Cloning

PwrGSD

Power in a Group Sequential Design

PythonInR

Use Python from Within R

qaqc

Quality Assurance and Quality Control Procedures for DICOM Data

QCA3

Yet another package for Qualitative Comparative Analysis

QCqPCR

Functions for quality control of RT-qPCR data

qfa

Tools for Quantitative Fitness Analysis (QFA) of Arrayed Microbial Cultures Growing on Solid Agar Surfaces

qfaBayes

Tools for modelling the growth dynamics of arrays of large numbers of colonies and performing quantitative fitness analysis (QFA).

qmao

Quantmod Add-on

qmrobust

Quality Management: Examples from the concrete industry

qrmtools

Tools for Quantitative Risk Management

qRNASeq

What the package does (short line)

qtlDesign

Design of QTL experiments

QTLNetworkR

Interactive software package for QTL visualization

qtl.outbred

Interface for Genotype Probabilities from Outbred Intercross

Qtools

Utilities for Quantiles

QuACN

QuACN: Quantitative Analysis of Complex Networks

quaddisc

Quadratic discrepancies

quadmod

Quadratic programming modeling language

qualtrics

Qualtrics Survey Data Access

quantstrat

Quantitative Strategy Model Framework

quasiRNG

Toolbox for quasi random number generation.

queue

This packages provides an interface for a queue class along with providing a uni-process queue class.

R2admb

ADMB to R interface functions

R2BayesX

Estimate Structured Additive Regression Models with 'BayesX'

r2dRue

2d Rain Use Efficience model

R2HTML

HTML exportation for R objects

R2STATS

A GTK GUI for fitting and comparing GLM and GLMM in R

r4ss

R code for Stock Synthesis

R4X

Manipulation of XML structures

racd

Autoregressive Conditional Density Models

ragram

Radargrammetry

rAltmetric

Retrieves altmerics data for any published paper from altmetric.com

ramPATH

ramPATH

random

True random numbers using random.org

randomForest

Breiman and Cutler's random forests for classification and regression

randomSubspace

Random Subspace

randtoolbox

Toolbox for Pseudo and Quasi Random Number Generation and RNG Tests

RandVar

Implementation of Random Variables

rangeMapper

A platform for the study of macroecology of life history traits

Rankcluster

Model-Based Clustering for Multivariate Partial Ranking Data

rasterExt

raster and external programs (FWtools, ArcGIS)

rasterFW

raster and FWtools

rasterVis

Visualization methods for the raster package

raw.means.plot

Raw-Means Plots for Experimental Designs

R.batch

Methods to run batch jobs in R

RBigQuery

BigQuery for R

Rbooks

Interactive course notes using R

rbrothers

rbrothers: multiple change-point recombination detection

rbsa

Ancillary Functions for R Programming

rbsb

set of ancillary functions

rcdklibs

rcdklib - CDK libraries packaged for R

rcicr

Reverse-Correlation Image-Classification Toolbox

Rcmdr

R Commander

Rcmdr1

R Commander

Rcmdr2

R Commander

Rcmdr205

R Commander

RcmdrDevel

R Commander

rcmdrfuzzyclust

R Commander Plug-in for Fuzzy Clustering Methods (Fuzzy C-Means and Gustafson Kessel)

RcmdrMisc

R Commander Miscellaneous Functions

RcmdrPlugin.BiclustGUI

'Rcmdr' Plug-in GUI for Biclustering

RcmdrPlugin.BiclustGUI.Extra

Title: 'Rcmdr' Plug-in GUI for Biclustering

RcmdrPlugin.EcoVirtual

Rcmdr EcoVirtual Plugin

RcmdrPlugin.FactoMineR

Graphical User Interface for FactoMineR

RcmdrPlugin.FuzzyClust

R Commander Plug-in for Fuzzy Clustering Methods (Fuzzy C-Means and Gustafson Kessel)

RcmdrPlugin.lfstat

Rcmdr Plug-in for Low Flow Analysis

RcmdrPlugin.NMBU

R Commander Plug-In for statistics at NMBU

RcmdrPlugin.SensoMineR

Graphical User Interface for SensoMineR

RcmdrPlugin.sos

Efficiently search the R help pages

RcmdrPlugin.survival

R Commander Plug-in for the 'survival' Package

RcmdrPlugin.TeachingDemos

Rcmdr Teaching Demos Plug-in

RcmdrPlugin.temis

Graphical Integrated Text Mining Solution

RcmdrPlugin.UCA

UCA Rcmdr Plug-in

RcmdrPlugin.UMB

R Commander Plug-In for statistics at UMB

rcolgem

statistical inference and modeling of genealogies generated by epidemic and ecological processes

rcolony

Tools for implementation and visualisation of Colony2 and its outputs.

Rcpp

Seamless R and C++ Integration

RcppArmadillo

Rcpp integration for Armadillo templated linear algebra library

RcppBDT

Rcpp bindings for the Boost Date_Time library

RcppClassic

Deprecated 'classic' Rcpp API

RcppClassicExamples

Examples using RcppClassic to interface R and C++

RcppCNPy

Rcpp bindings for NumPy files

RcppDE

Global optimization by differential evolution in C++

RcppExamples

Examples using Rcpp to interface R and C++

RcppGSL

Rcpp integration for GNU GSL vectors and matrices

RcppModels

Classes for linear and generalized linear and nonlinear models

RcppProgress

An interruptible progress bar with OpenMP support for c++ in R packages

RcppProgressExample

Example use of the RcppProgress package

RcppRandomSFMT

A R and Rcpp interface to the SIMD-oriented Fast Mersenne Twister (SFMT) Random Number Generator provided by http://www.agner.org/random Randomc.

RcppSMC

Rcpp bindings for Sequential Monte Carlo

RcppXts

Interface the xts API via Rcpp

Rcsdp

R interface to the CSDP semidefinite programming library

RCSI

An S4 interface to the CSI UA API

RDEC

RDEC -- regression with damped exponential correlation

Rdonlp2

An R extension library to use Peter Spelluci's DONLP2 from R.

rds2

Population size and degree distribution estimation in respondent driven sampling.

rdyncall

Improved Foreign Function Interface (FFI) and Dynamic Bindings to C Libraries (e.g. OpenGL)

ReacTran

Reactive Transport Modelling in 1d, 2d and 3d

ReadqPCR

Read qPCR data

realized

Realized

rebastaba

Handling Bayesian networks

rebmix

Finite Mixture Modeling, Clustering & Classification

recommenderlabBX

Book-Crossing Dataset (BX) for recommenderlab

recommenderlabJester

Jester Dataset for 'recommenderlab'

recommenderlabMahout

Developing and testing Recommender Algorithms using Apache Mahout and R

RecSelect

Using GRTS to sample along time

REddyProc

Data processing and plotting utilities of (half-)hourly eddy-covariance measurements

ref

References for R

refund.wave

Wavelet-Domain Regression with Functional Data

regr0

Building regression models

rehh

Searching for footprints of selection using Haplotype Homozygosity based tests

REIDS

Random Effects for the Identification of Differential Splicing

related

related: an R package for analyzing pairwise relatedness data based on codominant molecular markers

Reliability

Functions for estimating parameters in software reliability models

RemoteREngine

RMI based REngine implementation

RemoteSensing

Remote Sensing

rentrez

Entrez in R

reo

Random effects ordination

Reol

R interface to the Encyclopedia of Life

RepeatABEL

GWAS for Multiple Observations on Related Individuals

replicationgraph

Replication graph

ResourceSelection

Resource Selection (Probability) Functions for Use-Availability Data

RespChamberProc

Processing data from respiration chambers

REST

RcmdrPlugin Easy Script Templates

restorepoint

Debugging with restore points

rfFC

Random Forest Feature Contributions

RFLPtools

Tools to analyse RFLP data

rForest

Forest Inventory and Analysis

RForgeTools

R-Forge Build and Check Tools

rfTools

R-Forge Build and Check Tools

rgarch

Flexible GARCH modelling in R

Rgears

Various R utility functions.

RGIFT

Create quizzes in GIFT Format

rgl

3D Visualization Using OpenGL

Rglpk

R/GNU Linear Programming Kit Interface

rglwidget

'rgl' in 'htmlwidgets' Framework

rgmdh

group method of data handling

RgoogleMaps

Overlays on Static Maps

rgraph6

Interface to graph6 format for R

rgrass7

Interface Between GRASS 7 Geographical Information System and R

rgrs

Functions to make R usage in social sciences easier (in french)

RGtk2Extras

Data frame editor and dialog making wrapper for RGtk2

rHanso

An R Implementation of Hybrid Algorithm for Non-Smooth Optimization (HANSO)

rhr

Package to estimate home ranges through a graphical user interface.

RHRV

Heart Rate Variability Analysis of ECG Data

rhte

Robust Horvitz-Thompson Estimation

RHydro

Classes and methods for hydrological modelling and analysis

RHydroWasimData

Example data to demonstrate RHydro for WaSiM-ETH

RiceMap

Mapping rice area with time series of MODIS images

rich

Computes and Compares Species Richnesses

rieger

Radiation data of Reiger et al (2004)

RImageJ

R bindings for ImageJ

rImfil

An R Implementation of Implicit filtering algorithm

rinat

Access iNaturalist data through APIs

Rinfo

R package usage statistics

RiskBasedPortfolios

Computation of risk-based portfolios

riskPlots

Risk plots

RiskPortfolios

Computation of Risk-Based Portfolios

RiverSurvey

River Research and Modelling

RJEMM

R Implementation of Java Extensible Markov Models

rjpod

PDF ultilities based on the jPod Java library

rJython

R interface to Python via Jython

RLadyBug

Analysis of Infectious Diseases using Stochastic Epidemic Models

rLiDAR

LiDAR Data Processing and Visualization

rlogit

Random parameters logit model

RlpSolve

Interface to Lp_solve v. 5.5 to solve linear/integer programs

RlpSolveAPI

Interface to lp_solve v. 5.5

RMacoqui

Identifying and describing chorotypes based on similarity between species distributions

rmgarch

Multivariate GARCH models

RMixtComp

Mixture Composer

rmmseg4j

R interface to the Java Chinese word segmentation system of mmseg4j

RMonetDB

Provides access to MonetDB through the JDBC interface

Rmpfr

R MPFR - Multiple Precision Floating-Point Reliable

rm.plot

Raw-Means Plots for Experimental Designs

rmv

Multivariate random number generation

RnavGraphImageData

Some image data used in the RnavGraph package demos

rneos

XML-RPC Interface to NEOS

RNetCDF

Interface to NetCDF Datasets

RNetLogo

Provides an Interface to the Agent-Based Modelling Platform 'NetLogo'

rngSFMT2

SFMT random number generator

rngtools

Utility functions for working with Random Number Generators

rngWELL

Toolbox for WELL Random Number Generators

rngWELLOriginal

Well Equidistributed Long-period Linear modulo 2 random number generators by F. Panneton, P. L'Ecuyer, and M. Matsumoto.

Rnlminb2

An R extension library for constrained optimization with nlminb.

RNMImport

Tools for importing and manipulating NONMEM data.

rnso

An R Implementation of Hybrid Algorithm for Non-Smooth Optimization (HANSO)

RobAStRDA

Interpolation Grids for Packages of the 'RobASt' - Family of Packages

RobExtremes

Optimally Robust Estimation for Extreme Value Distributions

robKalman

Robust Kalman Filtering

RobRex

Optimally robust influence curves for regression and scale

RObsDat

Store your observations: R-Package to the Observations Data Model from CUAHSI

robts

Robust Time Series Analysis

robust

Port of the S+ "Robust Library"

robustbase

Basic Robust Statistics

robustDist

Calculation of labeled molecular distances robust to certain model misspecification

robustX

eXtra / eXperimental Functionality for Robust Statistics

rodbcExt

RODBC Extension

ROI

R Optimization Infrastructure

ROI.models.netlib

'ROI' Optimization Problems Based on 'NETLIB-LP'

ROI.plugin.ecos

ROI-Plugin ECOS

ROI.plugin.lpsolve

'lp_solve' Plugin for the 'R' Optimization Interface

ROI.plugin.optimx

'ROI'-Plugin 'optimx'

ROML

R Optimization Modeling Language

ROML.portfolio

ROML-Portfolio-Optimization

rootoned

Roots of one-dimensional functions in R-only code

rootSolve

Nonlinear Root Finding, Equilibrium and Steady-State Analysis of Ordinary Differential Equations

ROptEst

Optimally Robust Estimation

Ross

Ross Ordering

roxygen

Literate Programming in R

Rpad

Workbook-style, web-based interface to R

rpaoding

R interface to the Java Chinese word segmentation system of paoding

rpdfclown

PDF ultilities based on the PDF Clown Java library

RpepXML

R interface to the pepXML standard

rpg

Easy Interface to Advanced PostgreSQL Features

Rphree

Interface to the geochemical modelling program PHREEQC

rPithon

Use Python by Communicating Using a Pipe

rpkgstats

R package usage statistics

rPlant

R interface to the Agave and Foundation API

rpnf

Point and Figure Package

RPPanalyzer

Reads, Annotates, and Normalizes Reverse Phase Protein Array Data

rProcessing

Simple R/Processing Interface

Rproj4

Rproj4

rptR

Repeatability for Gaussian and non-Gaussian data

rpubchem

rpubchem - Interface to the PubChem Collection

rpubmed

rpubmed

RQDA

R-based Qualitative Data Analysis

RQDAtm

A package to bridge RQDA and tm

rqpd

Regression Quantiles for Panel Data

Rquadprog

An R extenstion library to use quadprog for portfolio Optimization

RQuantLib

R interface to the QuantLib library

RRegArch

General univariate ARCH models simulation and estimation

RRM

Implementation of ReliaSoft Ranking Method

rrMisc

Little Helpers

rrp

Random Recursive Partitioning

rsae

Robust Small Area Estimation

Rsafd

Statistical Analysis of Financial Data in R

rSALMO

Simulation of ecological lake models

rsap

Basic Statistics and Data Analysis

rseg

recursive segmentation (rseg)

rsem

Robust Structural Equation Modeling with Missing Data and Auxiliary Variables

Rshare

Shared environment across multiple independent R sessions

RSiena

Siena - Simulation Investigation for Empirical Network Analysis

RSienaTest

Siena - Simulation Investigation for Empirical Network Analysis

RSiteSearch

RSiteSearch

rsmartcn

R interface to the Java Chinese word segmentation system of smartcn

Rsocialdata

Handling survey data in R. (official release)

Rsocialdata0

Handling survey data in R. (beta version, not for use)

Rsocialdata.network

Network tools for the Rsocialdata package

Rsocp

An R extenstion library to use SOCP from R.

Rsolnp

General Non-Linear Optimization

Rsolnp2

Non-linear Programming with non-linear Constraints

rspecies

Multivariate Methods in Ecology with R: Simulating Communities

rstats

R package usage statistics

Rstem

Interface to Snowball implementation of Porter's word stemming algorithm.

rsubgroup

Subgroup Discovery and Analytics

R.synchronize

Synchronious locking mechanisms

rtanalyze

RTanalyze, reaction times storage and analysis.

RTCGAToolbox

A new tool for exporting TCGA Firehose data

rtest

unit and system testing for R

rtfSweave

An Sweave Driver to Process Files with R Code and RTF Text

rtkore

STK++ Core Library Integration to R using Rcpp

RTmodels

Utility function for modeling and simulation of (sub-second) response times in cognitive psychology

Rtnmin

Truncated Newton Function Minimization with Bounds Constraints

rtop

Interpolation of Data with Variable Spatial Support

rts

Raster Time Series Analysis

Rtts

Convert Text into Speech

RttsDevelop

Convert Text into Speech (Voice Files in .mp3, .flv, and .wav Format)

rugarch

Univariate GARCH models

ruleR

Generating numeric sequence items for intelligence tests

rusquant

Financial Modelling Framework extension for Russian stock market

russmisc

A repository for a variety of useful functions.

Rvmmin

Variable Metric Nonlinear Function Minimization

Rvmminx

Variable metric nonlinear function minimization with bounds constraints - experimental

RVowpalWabbit

R interface to the Vowpal Wabbit

Rwave

Time-Frequency analysis of 1-D signals

RWeather

R wrapper around the Yahoo! Weather, Google Weather and NOAA APIs

Rweibo

An interface to the Weibo open platform

RWOAG

Performs a Random Walk on a Graph

Rwordseg

Chinese word segmentation

rworldmap

Mapping global data, vector and raster.

rworldxtra

Country boundaries at high resolution.

RXKCD

Get XKCD comic from R

s4vd

Biclustering via Sparse Singular Value Decomposition Incorporating Stability Selection

SACCR

SA Counterparty Credit Risk under Basel III

safeBinaryRegression

Safe Binary Regression

sampSurf

Sampling Surface Simulation for Areal Sampling Methods

sandwich

Robust Covariance Matrix Estimators

sapa

Spectral Analysis for Physical Applications

SASmixed

Data sets from "SAS System for Mixed Models"

SATK

Scaling Analysis Toolkit

sbfac

Semiparametric Bayesian Factor Analytic Copula Models

SBMLModels

A collection of SBML Models with some experimental and simulated datasets.

SBSA

Simplified Bayesian Sensitivity Analysis

scan

Single-Case Data Analyses for Single and Multiple AB Designs

scatterplot3d

3D Scatter Plot

schwartz97

A package on the Schwartz two-factor commodity model

SCiAn

Spectrophotometry : CInetic ANalysis

SciencePo

Political Behaviour Analysis Tool

scimapClient

Collects and Reports Usage Data on R Packages

scoring

Proper Scoring Rules

scpt

Change Point Test for Spatio-Temporal Functional Data

scriptests

Transcript-Based Unit Tests that are Easy to Create and Maintain

SDaA

Sampling: Design and Analysis

sdafe

Companion to Statistics and Data Analysis for Financial Engineering

sdap

Statistical Data Preparation Indicators

sde

Simulation and Inference for Stochastic Differential Equations

sdm

Species Distribution Modelling

sdmo

Species Distribution Modelling (old version)

seacarb

Calculates parameters of the seawater carbonate system

sealevel

Utility functions for reading and analyzing trends in common used sealevel archives.

SearchTrees

Spatial Search Trees

season

Seasonal analysis of health data

seedDisp

Dispersal of seed routines

SegAnnot

Annotation-aware segmentation via dynamic programing

Segmentor3IsBack

A Fast Segmentation Algorithm

selectivity

My First Collection of Functions

SelvarMix

Regularization for Variable Selection in Model-Based Clustering and Discriminant Analysis

sem1

Structural Equation Models

sem3

Structural Equation Models

semdiag

Structural equation modeling diagnostics

semPLSModelSelection

Structural Equation Modeling Using Partial Least Squares

semspec

Unified Specification of Structural Equation Models

sensitivity

Sensitivity Analysis

sensitivityPStrat

Principal Stratification Sensitivity Analysis Functions

SensoMineR

Sensory data analysis with R

SeqCNVCBS

Scan Statistics for CNV Detection with CBS

seqdist2

Distance Between State Sequences

seqinr

Biological Sequences Retrieval and Analysis

seqTools

Analysis of nucleotide, sequence and quality content on fastq files.

setRNG

Set (Normal) Random Number Generator and Seed

sGE

Segmentation of GE data

sglOptim

Sparse group lasso generic optimizer

SglOptimizer

Sparse group lasso optimizer

shape

Functions for Plotting Graphical Shapes, Colors

sharpshootR

A Soil Survey Toolkit

sharx

Models and Data Sets for the Study of Species-Area Relationships

SIBER

Systematic Identification of Bimodally Expressed Genes Using RNAseq Data

SIGIL

Data Sets and Utility Functions for the 'SIGIL' Course

SII

Calculate ANSI S3.5-1997 Speech Intelligibility Index

simdat.base

Simulating data in R

simdat.gui

Shiny GUIs for the simdat.base data simulation package

simecol

Simulation of Ecological (and Other) Dynamic Systems

simecolModels

Model collection for the simecol package

simecolUtil

Collection of Helper Utilities

simfms

Simulation of clustered multi-state data

simplace

Interface to use the modelling framework SIMPLACE

simsalabim

A collection of methods for time series analysis and signal detection.

sintro

Introduction to R: sintro

sirad

Functions for Calculating Daily Solar Radiation and Evapotranspiration

sjemea

Multi electrode analysis

skellam

Densities and Sampling for the Skellam Distribution

SkewHyperbolic

The Skew Hyperbolic Student t-Distribution

Sleuth2

Data Sets from Ramsey and Schafer's "Statistical Sleuth (2nd Ed)"

Sleuth3

Data Sets from Ramsey and Schafer's "Statistical Sleuth (3rd Ed)"

SlideDesignerGUI

Slide Designer GUI Package

smacof

Multidimensional Scaling

SMCS4

Sequential Monte Carlo samplers in S4

smd

Sparse Multivariate Diffusions

smde

Sparse Multivariate Differential Equations

smfsb

SMfSB 2e: Stochastic Modelling for Systems Biology, second edition

SmoothHazard

Smooth models for interval-censored data with applications to survival and illness-death models

snatm

Combine Social Network Analysis and Text Mining

snopgof

Single-observation NOn-Parametric Goodness Of Fit

SNPRelate

Parallel Computing Toolset for Genome-Wide Association Studies (GWAS)

SobolIndices

Computing the Sobol Indices

SobolSensitivity

Computing the Sobol Sensitivity Indices

SOfireA

Satellite Observations for Fire Activity

softclassval

Soft Classification Performance Measures

softmaxreg

Training Multi-Layer Neural Network for Softmax Regression and Classification

soilDB

Soil Database Interface

SoilR

Models of Soil Organic Matter Decomposition

soils

spatial soil data related functions

soil.spec

Soil Spectroscopy Tools and Reference Models

solaR

Solar Photovoltaic Systems

sonicLength

Estimating Abundance of Clones from DNA fragmentation data

sorvi

sorvi - avoimen datan tyokalupakki

sos

Search Contributed R Packages, Sort by Package

spacemakeR

Spatial modelling

SparseGrid

Sparse grid integration in R

sparseLDA

Sparse Discriminant Analysis

spatialClust

Spatial Clustering using Fuzzy Geographically Weighted Clustering

SpatialExtremes

Modelling Spatial Extremes

spatialkernel

Nonparametric estimation of spatial segregation in a multivariate point process

spatial.tools

R Functions for Working with Spatial Data

SpaTimeClus

Model-Based Clustering of Spatio-Temporal Data

spcopula

Copula Driven Analysis - Multivariate, Spatial, Spatio-Temporal

spd

Semi Parametric Distribution

spdep

Spatial Dependence: Weighting Schemes, Statistics and Models

spdyn

Exploratory space-time data analysis

specfun

Special Functions

specif

Word Specificity

SpecLibDolphin2011

Mass Spectral Library Dolphin Blubber 2011

SpecLibExample

Example OrgMassSpecR Mass Spectral Library

spectral.methods

Singular Spectrum Analysis (SSA) Tools for Time Series Analysis

spectro

Spectroscopy data analysis

speedR

A GUI based importing and filtering tool

speedRlibs

Package containing the required libraries (jars) for speedR

speedRlibTF

speedR's table filter library

spfrontier

Spatial Stochastic Frontier Models

spgrass

Interface between GRASS 7+ geographical information system and R

spgrass7

Interface between GRASS 7 Geographical Information System and R

spgwr

Geographically Weighted Regression

sphet

Estimation of Spatial Autoregressive Models with and without Heteroskedastic Innovations

spider

Species Identity and Evolution in R

spiderDev

Species Identity and Evolution in R--development

spinyReg

Sparse Generative Model and Its EM Algorithm

splancs

Spatial and Space-Time Point Pattern Analysis

splinesurv

Nonparametric bayesian survival analysis

splits

SPecies' LImits by Threshold Statistics

splm

Econometric Models for Spatial Panel Data

splus2R

Supplemental S-PLUS functionality in R

spnet

Plotting (Social) Networks on Maps

SportsAnalytics

Infrastructure for Sports Analytics

spring

Fit the SPRING model

sprof

Profiling, timing and optimisation utilities

spse

Spatial Simultaneous Equations and Spatial Sur Model

sqliteTools

sqliteTools

sqlsurvey

analysis of very large complex survey samples (experimental)

SQN

subset quantile normalization

SQUAREM

Squared extrapolation methods for accelerating fixed-point iterations

SRS

Subject Randomization System

ssa

Singular Spectrum Analysis

sse

Sample Size Estimation

stabledist

Stable Distribution Functions

stablelearner

Stability Assessment of Statistical Learning Methods

stacomiR

Fish Migration Monitoring (stacomiR)

stacomirtools

ODBC Connection Class for Package stacomiR

STAR

Spike Train Analysis with R

STARStools

R functions for working spatial/remote sensing data.

Stat2Data

Datasets for Stat2

statcomp

Statistical Complexity and Information Measures for Time Series Analysis

STdiag

Functions to Plot a Structure-Time Diagram

stocks

Fast Functions for Stock Market Analysis

stops

STructure Optimized Proximity Scaling

stosim

Stochastic Simulator for Reliability Modeling of Repairable Systems

stpp

Space-Time Point Pattern simulation, visualisation and analysis

strat

Functions and data useful for social stratification research

StrategySwitch

Strategy Switch Model

streamFPM

Implementation of Frequent Pattern Mining for stream

streamMovingGenerator

Moving Generator

streamtNNfast

Fast implementation for tNN in stream

stringi

THE string processing package for R

StructureTimeDiagram

This package provides functions to plot a structure-time diagram

StudyPrior

Distributions for Historical Information

subgroup

Obsoleted package - use rsubgroup!

subgroup.discovery

Obsoleted package - use rsubgroup!

subplex

Subplex Optimization Algorithm

summarize

Summarize distributions in a concise way

Sunclarco

Survival Analysis using Copula's

superbiclust

Generating Robust Biclusters from a Bicluster Set (Ensemble Biclustering)

SuperCurve

RPPA Analysis Package

SuperCurveGUI

'SuperCurve' GUI Package

SuperCurveSampleData

SuperCurve RPPA Sample Data

supraHex

supraHex: a supra-hexagonal map for analysing tabular omics data

SURDES

Functions for a stratified SURvey DESign

surrosurv

Evaluation of Failure Time Surrogate Endpoints in Individual Patient Data Meta-Analyses

survbart

Survival analysis with BART

surveillance

Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic Phenomena

survey

Analysis of Complex Survey Samples

SurveyCode

What the package does (short line)

survGenesInterim

Simulation of Survival Studies with Microarray Data

survMisc

Miscellaneous Functions for Survival Data

Survomatic

Analysis of longevity data.

SVILD

Summaries of Variability of Irregularly Spaced Longitudinal Data

swale

SWALE: Simultaneous Waveform Amplitude and Latency Estimation.

swissMrP

Multilevel Regression with Post-Stratification for Switzerland

synbreed

Framework for the Analysis of Genomic Prediction Data using R

synchronicity

Boost mutex functionality for R.

synchrony

Methods for computing spatial, temporal, and spatiotemporal statistics

synDss

Recombination detection using synonymous distances

SynergizeR

Interface to The Synergizer service for translating between sets of biological identifiers.

systemfit

Estimating Systems of Simultaneous Equations

tab

Functions for Creating Summary Tables for Statistical Reports

tables

Formula-Driven Table Generation

TailRank

The Tail-Rank Statistic

tao

The great Tao package

TAPS

Tumor Abberation Prediction Suite

tclish

'Tcl/Tk' Utilities Package

tdisplay

Tool Box for Data Importation and Display

TeachingDemos

Demonstrations for Teaching and Learning

termstrc

Zero-coupon Yield Curve Estimation

ternaryplot

Infrastructure for ternary plots and ternary classifications (S3-classes)

test

test

testcpp

Testing external pointers with finalization in R using C++

texmex

Threshold exceedences and multivariate extremes

texreg

Conversion of R Regression Output to LaTeX or HTML Tables

tfMiscDevel

Time Frame Extensions (in Development)

tfplot

Time Frame User Utilities

tframe

Time Frame Coding Kernel

tframePlus

Time Frame Coding Kernel Extensions

TFX

R API to TrueFX(tm)

TH.data

TH's Data Archive

TH.priv

TH's private functions

Thresher

Threshing and Reaping for Principal Components

Tides

Tides

tikzDevice

R Graphics Output in LaTeX Format

timebart

timebart: Survival Analysis with BART

timeDate

Rmetrics - Chronological and Calendar Objects

timeSeries

Rmetrics - Financial Time Series Objects

TimeWarp

Date Calculations and Manipulation

TIMP

Fitting Separable Nonlinear Models in Spectroscopy and Microscopy

titanQC

QC Procedures for the GeneTitan platform

tkrgl

TK widget tools for rgl package

tldutils

Various utility functions

tlocoh

Constructs homeranges and explores time use patterns from location data

tlocoh.dev

Development package for tlocoh

tm

Text Mining Package

tmcn

A Text mining toolkit for international characters especially for Chinese.

tmcn.crfpp

R interface to CRF++ for conditional random fields

tmcn.word2vec

R interface to word2vec

tmdl

Flow and Load Duration Curve plots for TMDL

tme

Teaching Marketing Engineering with R

tm.plugin.sentiment

Text corpus sentiment analysis

TopKLists

Inference, Aggregation and Visualization for Top-K Ranked Lists

tourr

Implement tour methods in pure R code

toyRpkg

Toy R package

traceRkinetic

Kinetic analysis for dynamic nuclear imaging: compartmental models

track

Store Objects on Disk Automatically

tradesys

Trading System Modelling

Trading

Trades, Curves, Rating Tables, Add-on Tables, CSAs

trajectories

classes and methods for trajectory data

TraMineR

Trajectory Miner: a Toolbox for Exploring and Rendering Sequences

TraMineRextras

TraMineR Extension

travelr

Functions for Travel Demand Modeling

TreeHotspots

Hotspot Detection using Classification Trees

triangle

Provides the standard distribution functions for the triangle distribution

trim

Tree methods for classification of imbalanced data

tripEstimation

Metropolis sampler and supporting functions for estimating animal movement from archival tags and satellite fixes

TrueFX

R API to TrueFX

TruncatedDistributions

Use Truncated Distribution functions

TSAgg

Time series Aggregation

TScompare

'TSdbi' Database Comparison

tscount

Analysis of Count Time Series

TSdbi

Time Series Database Interface

TSfame

'TSdbi' Extensions for Fame

TSjson

'TSdbi' Extension to Import Time Series from Web Sources via JSON

tsk

Trimmed Spearman-Karber Method

TSmisc

'TSdbi' Extensions to Wrap Miscellaneous Data Sources

TSmisc2

Additional 'TSdbi' Extensions to Wrap Miscellaneous Data Sources

TSMySQL

'TSdbi' Extensions for 'MySQL'

TSPostgreSQL

'TSdbi' Extensions for 'PostgreSQL'

TSsdmx

'TSdbi' Extension to Connect with 'SDMX'

TSSP

Two-Stage Stochastic Programs

TSsql

Generic SQL Helper Functions for 'TSdbi' SQL Plugins

tstPkg1

Test Package 1

tstPkg2

Test Package 2

tth

TeX to HTML/MathML Translators TtH/TtM

TTR

Technical Trading Rules

tuneR

Analysis of music and speech

twang

Toolkit for Weighting and Analysis of Nonequivalent Groups

twConfig

Cascading configuration files

twDEMC

parallel DEMC

twinlm

Linear models for twin data

twMisc

Utility functions of tw

twMiscRgl

tw 3D utility functions

twModMeta

Support for array based state variables in ODE.

twNlme

Standard errors for basic nlme and gnls model predictions

twopiece

The family of two piece distributions

twsInstrument

Improves ease of use of IBrokers and FinancialInstrument

twSnowfall

tw snowfall extension

ucminf

General-purpose unconstrained non-linear optimization

Umpire

Umpire Package

UncertWebRTools

collection of useful R functions in the UncertWeb

uniaxialOptics

Modelling multilayer anisotropic stacks

unknownR

You didn't know you didn't know?

urca

Unit Root and Cointegration Tests for Time Series Data

uroot

Unit Root Tests and Graphics for Seasonal Time Series

UScensus2000

US Census 2000 Suite of R Packages

UScensus2000blkgrp

US Census 2000 Block Group Shapefiles and Additional Demographic Data

UScensus2000cdp

US Census 2000 Designated Places Shapefiles and Additional Demographic Data

UScensus2000tract

US Census 2000 Tract Level Shapefiles and Additional Demographic Data

UScensus2010

US Census 2010 Suite of R Packages

UScensus2010blkgrp

US Census 2010 Block Group Level Shapefiles and Additional Demographic Data

UScensus2010cdp

US Census 2010 Blockgroup Level Shapefiles and Additional Demographic Data

UScensus2010county

US Census 2010 County Level Shapefiles and Additional Demographic Data

UScensus2010tract

US Census 2010 Tract Level Shapefiles and Additional Demographic Data

usdm

Uncertainty analysis for species distribution models

USlobbying

Documents Filed under the US Lobbying Disclosure Act

utf8latex

Importing, Exporting and Converting Between Datasets and LaTeX

utilsag

Datasets and utility functions.

varComp

Variance Component Models

variables

Variable Descriptions

VarianceGamma

The Variance Gamma Distribution

VarSelLCM

Variable Selection for Model-Based Clustering of Continuous, Count, Categorical or Mixed-Type Data Set with Missing Values

vbv

Time series decomposition with VBV (Verallgemeinertes Berliner Verfahren)

vcdExtra

'vcd' Extensions and Additions

vcrpart

Tree-Based Varying Coefficient Regression for Generalized Linear and Ordinal Mixed Models

Vdgraph

Variance dispersion graphs and Fraction of design space plots for response surface designs

vectis

Modified Statistical Tools

vegan

Community Ecology Package

vegsoup

Classes and Methods for Phytosociology

Vennerable

Venn and Euler area-proportional diagrams

vGWAS

Variance Heterogeneity Genome-Wide Association Study

virta

Virtual tables for RSQLite

VirtualCom

Assembling virtual plant communities

VisCount

R package for training and evaluating visual count estimates

VPA

Variant Pattern Analyzer for next-generation sequencing study

vsa

Vector Symbol Architectures for AI & CogSci

VwGHat

Mining Austrian administrative court rulings

WaterMap

Mapping evapo-transpiration from satellite images.

WaveSeqR

A Wavelet-based Method for ChIP-Seq peak calling

waveslim

Basic Wavelet Routines for One-, Two- and Three-dimensional Signal Processing

waveTiling

Wavelet-Based Models for Tiling Array Transcriptome Analysis

waveTilingData

waveTiling Example Data

weather

Weather data manipulation

weatherData

obtain daily weather data

webmaps

Create HTML Web maps

WeightedCluster

Clustering of Weighted Data

weimea

Weighted mean of species attributes

WIDataRipper

WaterInfo Data Ripper

wls

Iteratively Re-Weighted Least Squares

WMCapacity

GUI implementing Bayesian working memory models

wmtsa

Wavelet Methods for Time Series Analysis

word.alignment

Finding Word Alignment Using IBM model 1 for a Given Parallel Corpus and Its Evaluation

wordcloud

Word Clouds

wordspace

Distributional Semantic Models in R

WriteXLS

Cross-platform Perl based R function to create Excel 2003 (XLS) files

WRS

A package of R.R. Wilcox' robust statistics functions

WRS2

A Collection of Robust Statistical Methods

wtJonckheere

Non-parametric Jonckheere-Terpstra trend test on weighted data

WWGbook

Datasets and scripts for WWGbook.

XGR

Exploring Genomic Relations for Enhanced Interpretation Through Enrichment, Similarity, Network and Annotation Analysis

xgrid

Access Apple Xgrid using R

xkcd

Plotting ggplot2 graphics in a XKCD style

xmetric

X-METRIC Multi-Echelon Techniques for Replaceable Inventory Control

XMLRPC

Remote Procedure Call (RPC) via XML in R

xmlschemaHelper

Tools for reading XML Schema within R

xterm256

Support for xterm256 escape sequences

Xtratsfa

Time Series Factor Analysis Extra Functions

xts

eXtensible Time Series

xtsExtra

Supplementary Functionality for xts

xVA

Calculates Credit Risk Valuation Adjustments

yags

Yet Another GEE Solver

yaImpute

Nearest Neighbor Observation Imputation and Evaluation Tools

YaleToolkit

Data exploration tools from Yale University.

yang

Microarray GDS1887 DATA

yapomif

Yet another package of misc functions

yarr

Extensible Framework for R Reporting

yasomi

Yet Another Self Organising Map Implementation

YieldCurve

Modelling and estimation of the yield curve

YplantQMC

Plant architectural analysis with Yplant and QuasiMC.

yuima

The YUIMA Project Package for SDEs

yuimaGUI

A Graphical User Interface for the 'yuima' Package

Zar5

Data sets from Biostatistical Analysis

zenplots

Zigzag Expanded Navigation Plots

ziLRhClust

Hierarchical Clustering Based on Log-Likelihood Ratio for Zero-Inflated Data

zipfR

Statistical models for word frequency distributions

zoo

S3 Infrastructure for Regular and Irregular Time Series (Z's Ordered Observations)

zooExtra

Supplementary Functionality for zoo Time Series

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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