All R packages

A3
Accurate, Adaptable, and Accessible Error Metrics for Predictive Models
abbyyR
Access to Abbyy Optical Character Recognition (OCR) API
abc
Tools for Approximate Bayesian Computation (ABC)
ABCanalysis
Computed ABC Analysis
abc.data
Data Only: Tools for Approximate Bayesian Computation (ABC)
abcdeFBA
ABCDE_FBA: A-Biologist-Can-Do-Everything of Flux Balance Analysis with this package.
ABCoptim
Implementation of Artificial Bee Colony (ABC) Optimization
ABCp2
Approximate Bayesian Computational Model for Estimating P2
ABC.RAP
Array Based CpG Region Analysis Pipeline
abcrf
Approximate Bayesian Computation via Random Forests
abctools
Tools for ABC Analyses
abd
The Analysis of Biological Data
abf2
Load Gap-Free Axon ABF2 Files
ABHgenotypeR
Easy Visualization of ABH Genotypes
abind
Combine Multidimensional Arrays
abn
Modelling Multivariate Data with Additive Bayesian Networks
abodOutlier
Angle-Based Outlier Detection
AbsFilterGSEA
Improved False Positive Control of Gene-Permuting GSEA with Absolute Filtering
abundant
Abundant regression and high-dimensional principal fitted components
ACA
Abrupt Change-Point or Aberration Detection in Point Series
acc
Functions for Processing and Analyzing Accelerometer Data
accelerometry
Functions for Processing Minute-to-Minute Accelerometer Data
accelmissing
Missing Value Imputation for Accelerometer Data
AcceptanceSampling
Creation and Evaluation of Acceptance Sampling Plans
ACCLMA
ACC & LMA Graph Plotting
accrual
Bayesian Accrual Prediction
accrued
Data Quality Visualization Tools for Partially Accruing Data
ACD
Categorical data analysis with complete or missing responses
ACDm
Tools for Autoregressive Conditional Duration Models
acebayes
Optimal Bayesian Experimental Design using the ACE Algorithm
acepack
ACE and AVAS for Selecting Multiple Regression Transformations
ACEt
Estimating Dynamic Heritability and Twin Model Comparison
acid
Analysing Conditional Income Distributions
acm4r
Align-and-Count Method comparisons of RFLP data
acmeR
Implements ACME Estimator of Bird and Bat Mortality by Wind Turbines
ACNE
Affymetrix SNP Probe-Summarization using Non-Negative Matrix Factorization
acnr
Annotated Copy-Number Regions
acopula
Modelling dependence with multivariate Archimax (or any user-defined continuous) copulas.
acp
Autoregressive Conditional Poisson
aCRM
Convenience functions for analytical Customer Relationship Management
AcrossTic
A Cost-Minimal Regular Spanning Subgraph with TreeClust
acs
Download, Manipulate, and Present American Community Survey and Decennial Data from the US Census
ACSNMineR
Gene Enrichment Analysis from ACSN Maps or GMT Files
acss
Algorithmic Complexity for Short Strings
acss.data
Data Only: Algorithmic Complexity of Short Strings (Computed via Coding Theorem Method)
ACSWR
A Companion Package for the Book "A Course in Statistics with R"
ACTCD
Asymptotic Classification Theory for Cognitive Diagnosis
Actigraphy
Actigraphy Data Analysis
activity
Animal Activity Statistics
activpalProcessing
Process activPAL Events Files
actuar
Actuarial Functions and Heavy Tailed Distributions
ActuDistns
Functions for actuarial scientists
ada
The R Package Ada for Stochastic Boosting
adabag
Applies Multiclass AdaBoost.M1, SAMME and Bagging
adagio
Discrete and Global Optimization Routines
AdapEnetClass
A Class of Adaptive Elastic Net Methods for Censored Data
adapr
Implementation of an Accountable Data Analysis Process
adaptDA
Adaptive Mixture Discriminant Analysis
AdaptFit
Adaptive Semiparametic Regression
AdaptFitOS
Adaptive Semiparametric Regression with Simultaneous Confidence Bands
AdaptGauss
Gaussian Mixture Models (GMM)
AdaptiveSparsity
Adaptive Sparsity Models
adaptivetau
Tau-Leaping Stochastic Simulation
adaptMCMC
Implementation of a generic adaptive Monte Carlo Markov Chain sampler
adaptsmoFMRI
Adaptive Smoothing of FMRI Data
adaptTest
Adaptive two-stage tests
ADCT
Adaptive Design in Clinical Trials
addhaz
Binomial and Multinomial Additive Hazards Models
addhazard
Fit Additive Hazards Models for Survival Analysis
addinslist
Discover and Install Useful RStudio Addins
additivityTests
Additivity Tests in the Two Way Anova with Single Sub-class Numbers
addreg
Additive Regression for Discrete Data
ADDT
Analysis of Accelerated Destructive Degradation Test Data
ade4
Analysis of Ecological Data : Exploratory and Euclidean Methods in Environmental Sciences
ade4TkGUI
'ade4' Tcl/Tk Graphical User Interface
adegenet
Exploratory Analysis of Genetic and Genomic Data
adegraphics
An S4 Lattice-Based Package for the Representation of Multivariate Data
adehabitat
Analysis of Habitat Selection by Animals
adehabitatHR
Home Range Estimation
adehabitatHS
Analysis of Habitat Selection by Animals
adehabitatLT
Analysis of Animal Movements
adehabitatMA
Tools to Deal with Raster Maps
adephylo
adephylo: exploratory analyses for the phylogenetic comparative method.
AdequacyModel
Adequacy of Probabilistic Models and General Purpose Optimization
adespatial
Multivariate Multiscale Spatial Analysis
ADGofTest
Anderson-Darling GoF test
adhoc
calculate ad hoc distance thresholds for DNA barcoding identification
adimpro
Adaptive Smoothing of Digital Images
AdjBQR
Adjusted Bayesian Quantile Regression Inference
adlift
An adaptive lifting scheme algorithm
ADM3
An Interpretation of the ADM method - automated detection algorithm.
AdMit
Adaptive Mixture of Student-t distributions
admixturegraph
Admixture Graph Manipulation and Fitting
ADMMnet
Regularized Model with Selecting the Number of Non-Zeros
ADPclust
Fast Clustering Using Adaptive Density Peak Detection
ads
Spatial point patterns analysis
AdvBinomApps
Upper Clopper-Pearson Confidence Limits for Burn-in Studies under Additional Available Information
advclust
Object Oriented Advanced Clustering
adwave
Wavelet Analysis of Genomic Data from Admixed Populations
AEDForecasting
Change Point Analysis in ARIMA Forecasting
aemo
Download and Process AEMO Price and Demand Data
AER
Applied Econometrics with R
AF
Model-Based Estimation of Confounder-Adjusted Attributable Fractions
afex
Analysis of Factorial Experiments
AFLPsim
Hybrid Simulation and Genome Scan for Dominant Markers
AFM
Atomic Force Microscope Image Analysis
after
Run Code in the Background
aftgee
Accelerated Failure Time Model with Generalized Estimating Equations
AGD
Analysis of Growth Data
AggregateR
Aggregate Numeric, Date and Categorical Variables by an ID
agop
Aggregation Operators and Preordered Sets
agRee
Various Methods for Measuring Agreement
Agreement
Statistical Tools for Measuring Agreement
agricolae
Statistical Procedures for Agricultural Research
agridat
Agricultural Datasets
agrmt
Calculate Agreement or Consensus in Ordered Rating Scales
AGSDest
Estimation in Adaptive Group Sequential Trials
agsemisc
Miscellaneous plotting and utility functions
ahaz
Regularization for semiparametric additive hazards regression
AhoCorasickTrie
Fast Searching for Multiple Keywords in Multiple Texts
ahp
Analytic Hierarchy Process
AHR
Estimation and Testing of Average Hazard Ratios
AICcmodavg
Model Selection and Multimodel Inference Based on (Q)AIC(c)
AID
Estimation of Box-Cox Power Transformation Parameter
aidar
Tools for reading AIDA (http://aida.freehep.org/) files into R
AIM
AIM: adaptive index model
aimPlot
Create Pie Like Plot for Completeness
Ake
Associated Kernel Estimations
akima
Interpolation of Irregularly and Regularly Spaced Data
akmeans
Adaptive Kmeans algorithm based on threshold
ALA4R
Atlas of Living Australia (ALA) Data and Resources in R
alabama
Constrained Nonlinear Optimization
alakazam
Immunoglobulin Clonal Lineage and Diversity Analysis
ald
The Asymmetric Laplace Distribution
ALDqr
Quantile Regression Using Asymmetric Laplace Distribution
aLFQ
Estimating Absolute Protein Quantities from Label-Free LC-MS/MS Proteomics Data
AlgDesign
Algorithmic Experimental Design
AlgebraicHaploPackage
Haplotype Two Snips Out of a Paired Group of Patients
algorithmia
Allows you to Easily Interact with the Algorithmia Platform
algstat
Algebraic statistics in R
AlignStat
Comparison of Alternative Multiple Sequence Alignments
alineR
Alignment of Phonetic Sequences Using the 'ALINE' Algorithm
ALKr
Generate Age-Length Keys for fish populations
allan
Automated Large Linear Analysis Node
allanvar
Allan Variance Analysis
alleHap
Allele Imputation and Haplotype Reconstruction from Pedigree Databases
allelematch
Identifying unique multilocus genotypes where genotyping error and missing data may be present
AlleleRetain
Allele Retention, Inbreeding, and Demography
allelic
A fast, unbiased and exact allelic exact test
AllPossibleSpellings
Computes all of a word's possible spellings.
alluvial
Alluvial Diagrams
alm
R Client for the Lagotto Altmetrics Platform
alphahull
Generalization of the Convex Hull of a Sample of Points in the Plane
alphaOutlier
Obtain Alpha-Outlier Regions for Well-Known Probability Distributions
alphashape3d
Implementation of the 3D Alpha-Shape for the Reconstruction of 3D Sets from a Point Cloud
alr3
Data to accompany Applied Linear Regression 3rd edition
alr4
Data to accompany Applied Linear Regression 4rd edition
ALS
Multivariate Curve Resolution Alternating Least Squares (MCR-ALS)
ALSCPC
Accelerated line search algorithm for simultaneous orthogonal transformation of several positive definite symmetric matrices to nearly diagonal form.
ALSM
Companion to Applied Linear Statistical Models
altmeta
Alternative Meta-Analysis Methods
ALTopt
Optimal Experimental Designs for Accelerated Life Testing
amap
Another Multidimensional Analysis Package
AMAP.Seq
Compare Gene Expressions from 2-Treatment RNA-Seq Experiments
AMCP
A Multiple Comparison Perspective
ameco
European Commission Annual Macro-Economic (AMECO) Database
amei
Adaptive Management of Epidemiological Interventions
Amelia
A Program for Missing Data
amen
Additive and Multiplicative Effects Models for Networks and Relational Data
AmericanCallOpt
This package includes pricing function for selected American call options with underlying assets that generate payouts.
AMGET
Post-processing tool for ADAPT 5
aml
Adaptive Mixed LASSO
AMModels
Adaptive Management Model Manager
AMOEBA
A Multidirectional Optimum Ecotope-Based Algorithm
AMORE
A MORE flexible neural network package
AmostraBrasil
Generates Samples or Complete List of Brazilian IBGE (Instituto Brasileiro De Geografia e Estatistica) Census Households, Geocoding it by Google Maps
ampd
An Algorithm for Automatic Peak Detection in Noisy Periodic and Quasi- Periodic Signals
AmpliconDuo
Statistical Analysis of Amplicon Data of the Same Sample to Identify Artefacts
AmyloGram
Prediction of Amyloid Proteins
anacor
Simple and Canonical Correspondence Analysis
analogsea
Interface to 'Digital Ocean'
analogue
Analogue and Weighted Averaging Methods for Palaeoecology
analogueExtra
Additional Functions for Use with the Analogue Package
analyz
Model Layer for Automatic Data Analysis via CSV File Interpretation
AnalyzeFMRI
Functions for analysis of fMRI datasets stored in the ANALYZE or NIFTI format.
AnalyzeTS
Analyze Fuzzy Time Series
anametrix
Bidirectional Connector to Anametrix API
anapuce
Tools for microarray data analysis
AncestryMapper
Assigning Ancestry Based on Population References
anchors
Statistical analysis of surveys with anchoring vignettes
AnDE
An extended Bayesian Learning Technique developed by Dr. Geoff Webb
andrews
Andrews curves
anesrake
ANES Raking Implementation
anfis
Adaptive Neuro Fuzzy Inference System in R
AnglerCreelSurveySimulation
Simulate a Bus Route Creel Survey of Anglers
animalTrack
Animal track reconstruction for high frequency 2-dimensional (2D) or 3-dimensional (3D) movement data.
animation
A Gallery of Animations in Statistics and Utilities to Create Animations
anim.plots
Simple Animated Plots For R
ANLP
Build Text Prediction Model
AnnotLists
AnnotLists: A tool to annotate multiple lists from a specific annotation file.
anoint
Analysis of Interactions
ANOM
Analysis of Means
anominate
alpha-NOMINATE Ideal Point Estimator
anonymizer
Anonymize Data Containing Personally Identifiable Information
AntAngioCOOL
Anti-Angiogenic Peptide Prediction
AnthropMMD
A GUI for Mean Measures of Divergence
Anthropometry
Statistical Methods for Anthropometric Data
antitrust
Tools for Antitrust Practitioners
AntWeb
programmatic interface to the AntWeb
anytime
Anything to 'POSIXct' or 'Date' Converter
aod
Analysis of Overdispersed Data
aods3
Analysis of Overdispersed Data using S3 methods
aoos
Another Object Orientation System
aop
Adverse Outcome Pathway Analysis
aoristic
aoristic analysis with spatial output (kml)
apa
Format Outputs of Statistical Tests According to APA Guidelines
ApacheLogProcessor
Process the Apache Web Server Access Log Files
apaStyle
Generate APA Tables for MS Word
apaTables
Create American Psychological Association (APA) Style Tables
apc
Age-Period-Cohort Analysis
apcluster
Affinity Propagation Clustering
apdesign
An Implementation of the Additive Polynomial Design Matrix
ape
Analyses of Phylogenetics and Evolution
apex
Phylogenetic Methods for Multiple Gene Data
aplore3
Datasets from Hosmer, Lemeshow and Sturdivant, "Applied Logistic Regression" (3rd Ed., 2013)
aplpack
Another Plot PACKage: stem.leaf, bagplot, faces, spin3R, plotsummary, plothulls, and some slider functions
apmsWAPP
Pre- and Postprocessing for AP-MS data analysis based on spectral counts
appell
Compute Appell's F1 hypergeometric function
apple
Approximate Path for Penalized Likelihood Estimators
AppliedPredictiveModeling
Functions and Data Sets for 'Applied Predictive Modeling'
appnn
Amyloid Propensity Prediction Neural Network
approximator
Bayesian prediction of complex computer codes
aprean3
Datasets from Draper and Smith "Applied Regression Analysis" (3rd Ed., 1998)
apricom
Tools for the a Priori Comparison of Regression Modelling Strategies
aprof
Amdahl's Profiler, Directed Optimization Made Easy
APSIM
General Utility Functions for the 'Agricultural Production Systems Simulator'
APSIMBatch
Analysis the output of Apsim software
apsimr
Edit, Run and Evaluate APSIM Simulations Easily Using R
apsrtable
apsrtable model-output formatter for social science
apt
Asymmetric Price Transmission
APtools
Average Positive Predictive Values (AP) for Binary Outcomes and Censored Event Times
apTreeshape
Analyses of Phylogenetic Treeshape
aqfig
Functions to help display air quality model output and monitoring data
aqp
Algorithms for Quantitative Pedology
aqr
Interface methods to use with an ActiveQuant Master Server
AquaEnv
Integrated Development Toolbox for Aquatic Chemical Model Generation
AR1seg
Segmentation of an autoregressive Gaussian process of order 1
arabicStemR
Arabic Stemmer for Text Analysis
ArArRedux
Rigorous Data Reduction and Error Propagation of Ar40 / Ar39 Data
arc
Association Rule Classification
ARCensReg
Fitting Univariate Censored Linear Regression Model with Autoregressive Errors
archdata
Example Datasets from Archaeological Research
archetypes
Archetypal Analysis
archiDART
Plant Root System Architecture Analysis Using DART and RSML Files
archivist
Tools for Storing, Restoring and Searching for R Objects
archivist.github
Tools for Archiving, Managing and Sharing R Objects via GitHub
ArDec
Time series autoregressive-based decomposition
arf3DS4
Activated Region Fitting, fMRI data analysis (3D).
arfima
Fractional ARIMA (and Other Long Memory) Time Series Modeling
ArfimaMLM
Arfima-MLM Estimation For Repeated Cross-Sectional Data
argosfilter
Argos locations filter
argparse
Command Line Optional and Positional Argument Parser
argparser
Command-Line Argument Parser
ArgumentCheck
Improved Communication to Users with Respect to Problems in Function Arguments
arm
Data Analysis Using Regression and Multilevel/Hierarchical Models
arnie
"Arnie" box office records 1982-2014
aroma.affymetrix
Analysis of Large Affymetrix Microarray Data Sets
aroma.apd
A Probe-Level Data File Format Used by 'aroma.affymetrix' [deprecated]
aroma.cn
Copy-Number Analysis of Large Microarray Data Sets
aroma.core
Core Methods and Classes Used by 'aroma.*' Packages Part of the Aroma Framework
ARPobservation
Tools for Simulating Direct Behavioral Observation Recording Procedures Based on Alternating Renewal Processes
aRpsDCA
Arps Decline Curve Analysis in R
arrApply
Apply a Function to a Margin of an Array
ArrayBin
Binarization of numeric data arrays
arrayhelpers
Convenience Functions for Arrays
ars
Adaptive Rejection Sampling
ART
Aligned Rank Transform for Nonparametric Factorial Analysis
artfima
ARTFIMA Model Estimation
ARTIVA
Time-Varying DBN Inference with the ARTIVA (Auto Regressive TIme VArying) Model
ARTool
Aligned Rank Transform
ARTP
Gene and Pathway p-values computed using the Adaptive Rank Truncated Product
ARTP2
Pathway and Gene-Level Association Test
arules
Mining Association Rules and Frequent Itemsets
arulesCBA
Classification Based on Association Rules
arulesNBMiner
Mining NB-Frequent Itemsets and NB-Precise Rules
arulesSequences
Mining Frequent Sequences
arulesViz
Visualizing Association Rules and Frequent Itemsets
aRxiv
Interface to the arXiv API
asaur
Data Sets for "Applied Survival Analysis Using R""
asbio
A Collection of Statistical Tools for Biologists
ascii
Export R objects to several markup languages
as.color
Assign Random Colors to Unique Items in a Vector
asd
Simulations for Adaptive Seamless Designs
asdreader
Reading ASD Binary Files in R
ash
David Scott's ASH Routines
asht
Applied Statistical Hypothesis Tests
AsioHeaders
'Asio' C++ Header Files
aslib
Interface to the Algorithm Selection Benchmark Library
ASMap
Linkage Map Construction using the MSTmap Algorithm
asnipe
Animal Social Network Inference and Permutations for Ecologists
aspace
A collection of functions for estimating centrographic statistics and computational geometries for spatial point patterns
ASPBay
Bayesian Inference on Causal Genetic Variants using Affected Sib-Pairs Data
aspect
A General Framework for Multivariate Analysis with Optimal Scaling
aspi
Analysis of Symmetry of Parasitic Infections
aSPU
Adaptive Sum of Powered Score Test
asremlPlus
Augments the Use of 'ASReml-R' in Fitting Mixed Models
assertive
Readable Check Functions to Ensure Code Integrity
assertive.base
A Lightweight Core of the 'assertive' Package
assertive.code
Assertions to Check Properties of Code
assertive.data
Assertions to Check Properties of Data
assertive.data.uk
Assertions to Check Properties of Strings
assertive.data.us
Assertions to Check Properties of Strings
assertive.datetimes
Assertions to Check Properties of Dates and Times
assertive.files
Assertions to Check Properties of Files
assertive.matrices
Assertions to Check Properties of Matrices
assertive.models
Assertions to Check Properties of Models
assertive.numbers
Assertions to Check Properties of Numbers
assertive.properties
Assertions to Check Properties of Variables
assertive.reflection
Assertions for Checking the State of R
assertive.sets
Assertions to Check Properties of Sets
assertive.strings
Assertions to Check Properties of Strings
assertive.types
Assertions to Check Types of Variables
assertr
Assertive Programming for R Analysis Pipelines
assertthat
Easy pre and post assertions.
AssetPricing
Optimal pricing of assets with fixed expiry date.
assist
A Suite of R Functions Implementing Spline Smoothing Techniques
ASSISTant
Adaptive Subgroup Selection in Group Sequential Trials
AssocTests
Genetic Association Studies
assortnet
Calculate the Assortativity Coefficient of Weighted and Binary Networks
AssotesteR
Statistical Tests for Genetic Association Studies
aster
Aster Models
aster2
Aster Models
astro
Astronomy Functions, Tools and Routines
astrochron
A Computational Tool for Astrochronology
astrodatR
Astronomical Data
astroFns
Astronomy: time and position functions, misc. utilities
astrolibR
Astronomy Users Library
astsa
Applied Statistical Time Series Analysis
asVPC
Average Shifted Visual Predictive Checks
asymLD
Asymmetric Linkage Disequilibrium (ALD) for Polymorphic Genetic Data
asymmetry
Visualizing Asymmetric Data
asympTest
Asymptotic statistic
AsynchLong
Regression Analysis of Sparse Asynchronous Longitudinal Data
asypow
Calculate Power Utilizing Asymptotic Likelihood Ratio Methods
ATE
Inference for Average Treatment Effects using Covariate Balancing
AtelieR
A GTK GUI for teaching basic concepts in statistical inference, and doing elementary bayesian tests.
atmcmc
Automatically Tuned Markov Chain Monte Carlo
ATmet
Advanced Tools for Metrology
AtmRay
Acoustic Traveltime Calculations for 1-D Atmospheric Models
aTSA
Alternative Time Series Analysis
atsd
Support Querying Axibase Time-Series Database
attribrisk
Population Attributable Risk
AUC
Threshold independent performance measures for probabilistic classifiers.
aucm
AUC Maximization
AUCRF
Variable Selection with Random Forest and the Area Under the Curve
audio
Audio Interface for R
audiolyzR
audiolyzR: Give your data a listen
audit
Bounds for Accounting Populations
auRoc
Various Methods to Estimate the AUC
AUtests
Approximate Unconditional and Permutation Tests
AutoDeskR
An Interface to the 'AutoDesk' 'API'
autoencoder
Sparse Autoencoder for Automatic Learning of Representative Features from Unlabeled Data
autoimage
Display Multiple Images with Scaled Colors
automap
Automatic interpolation package
AutoModel
Automated Hierarchical Multiple Regression with Assumptions Checking
automultinomial
Autologistic and Automultinomial Spatial Regression and Variable Selection
autopls
Partial Least Squares Regression with Backward Selection of Predictors
AutoregressionMDE
Minimum Distance Estimation in Autoregressive Model
AutoSEARCH
General-to-Specific (GETS) Modelling
autoSEM
Performs Specification Search in Structural Equation Models
autovarCore
Automated Vector Autoregression Models and Networks
averisk
Calculation of Average Population Attributable Fractions and Confidence Intervals
aVirtualTwins
Adaptation of Virtual Twins Method from Jared Foster
aws
Adaptive Weights Smoothing
aws.alexa
Client for the Amazon Alexa Web Information Services API
awsMethods
Class and Methods Definitions for Packages 'aws', 'adimpro', 'fmri', 'dwi'
aws.signature
Amazon Web Services Request Signatures
aylmer
A generalization of Fisher's exact test
AzureML
Interface with Azure Machine Learning Datasets, Experiments and Web Services
B2Z
Bayesian Two-Zone Model
b6e6rl
Adaptive differential evolution, b6e6rl variant
babar
Bayesian Bacterial Growth Curve Analysis in R
babel
Ribosome Profiling Data Analysis
BaBooN
Bayesian Bootstrap Predictive Mean Matching - Multiple and Single Imputation for Discrete Data
babynames
US Baby Names 1880-2014
BACA
Bubble Chart to Compare Biological Annotations by using DAVID
BacArena
Modeling Framework for Cellular Communities in their Environments
BACCO
Bayesian Analysis of Computer Code Output (BACCO)
BACCT
Bayesian Augmented Control for Clinical Trials
backblazer
Bindings to the Backblaze B2 API
backpipe
Backward Pipe Operator
backports
Reimplementations of Functions Introduced Since R-3.0.0
backShift
Learning Causal Cyclic Graphs from Unknown Shift Interventions
backtest
Exploring Portfolio-Based Conjectures About Financial Instruments
backtestGraphics
Interactive Graphics for Portfolio Data
BACprior
Choice of the Hyperparameter Omega in the Bayesian Adjustment for Confounding (BAC) Algorithm
bacr
Bayesian Adjustment for Confounding
badgecreatr
Create Badges for 'Travis', 'Repostatus' 'Codecov.io' Etc in Github Readme
BAEssd
Bayesian Average Error approach to Sample Size Determination
Bagidis
BAses GIving DIStances
bagRboostR
Ensemble bagging and boosting classifiers
BalanceCheck
Balance Check for Multiple Covariates in Matched Observational Studies
BalancedSampling
Balanced and Spatially Balanced Sampling
BaM
Functions and Datasets for Books by Jeff Gill
bamdit
Bayesian Meta-Analysis of Diagnostic Test Data
BAMMtools
Analysis and Visualization of Macroevolutionary Dynamics on Phylogenetic Trees
bandit
Functions for simple A/B split test and multi-armed bandit analysis
BANFF
Bayesian Network Feature Finder
BANOVA
Hierarchical Bayesian ANOVA Models
banxicoR
Download Data from the Bank of Mexico
bapred
Batch Effect Removal and Addon Normalization (in Phenotype Prediction using Gene Data)
BaPreStoPro
Bayesian Prediction of Stochastic Processes
barcode
Barcode distribution plots
BarcodingR
Species Identification using DNA Barcodes
Barnard
Barnard's Unconditional Test
bartMachine
Bayesian Additive Regression Trees
bartMachineJARs
bartMachine JARs
Barycenter
Wasserstein Barycenter
BAS
Bayesian Model Averaging using Bayesian Adaptive Sampling
base64
Base64 Encoder and Decoder
base64enc
Tools for base64 encoding
base64url
Fast and URL-Safe Base64 Encoder and Decoder
basefun
Infrastructure for Computing with Basis Functions
baseline
Baseline Correction of Spectra
basicspace
Recovering a Basic Space from Issue Scales
BASIX
BASIX: An efficient C/C++ toolset for R.
BaSTA
Age-Specific Survival Analysis from Incomplete Capture-Recapture/Recovery Data
bastah
Big Data Statistical Analysis for High-Dimensional Models
BAT
Biodiversity Assessment Tools
batade
HTML reports and so on
batch
Batching Routines in Parallel and Passing Command-Line Arguments to R
BatchExperiments
Statistical Experiments on Batch Computing Clusters
BatchGetSymbols
Downloads and Organizes Financial Data for Multiple Tickers
BatchJobs
Batch Computing with R
batchmeans
Consistent Batch Means Estimation of Monte Carlo Standard Errors
batchtools
Tools for Computation on Batch Systems
batman
Convert Categorical Representations of Logicals to Actual Logicals
batteryreduction
An R Package for Data Reduction by Battery Reduction
BayClone2
Bayesian Feature Allocation Model for Tumor Heterogeneity
bayesAB
Fast Bayesian Methods for AB Testing
BayesBD
Bayesian Inference for Image Boundaries
BayesBinMix
Bayesian Estimation of Mixtures of Multivariate Bernoulli Distributions
bayesbio
Miscellaneous Functions for Bioinformatics and Bayesian Statistics
bayesboot
An Implementation of Rubin's (1981) Bayesian Bootstrap
BayesBridge
Bridge Regression
BayesComm
Bayesian Community Ecology Analysis
bayescount
Power Calculations and Bayesian Analysis of Count Distributions and FECRT Data using MCMC
BayesCR
Bayesian Analysis of Censored Regression Models Under Scale Mixture of Skew Normal Distributions
BayesDA
Functions and Datasets for the book "Bayesian Data Analysis"
bayesDccGarch
The Bayesian Dynamic Conditional Correlation GARCH Model
bayesDem
Graphical User Interface for bayesTFR, bayesLife and bayesPop
BayesFactor
Computation of Bayes Factors for Common Designs
BayesFM
Bayesian Inference for Factor Modeling
bayesGARCH
Bayesian Estimation of the GARCH(1,1) Model with Student-t Innovations
bayesGDS
Scalable Rejection Sampling for Bayesian Hierarchical Models
BayesGESM
Bayesian Analysis of Generalized Elliptical Semi-Parametric Models and Flexible Measurement Error Models
BayesH
Bayesian Regression Model with Mixture of Two Scaled Inverse Chi Square as Hyperprior
BayesianAnimalTracker
Bayesian Melding of GPS and DR Path for Animal Tracking
Bayesianbetareg
Bayesian Beta regression: joint mean and precision modeling
BayesianNetwork
Bayesian Network Modeling and Analysis
bayesImageS
Bayesian Methods for Image Segmentation using a Potts Model
BayesLCA
Bayesian Latent Class Analysis
bayesLife
Bayesian Projection of Life Expectancy
BayesLogit
Logistic Regression
bayesm
Bayesian Inference for Marketing/Micro-Econometrics
BayesMAMS
Designing Bayesian Multi-Arm Multi-Stage Studies
bayesMCClust
Mixtures-of-Experts Markov Chain Clustering and Dirichlet Multinomial Clustering
BayesMed
Default Bayesian Hypothesis Tests for Correlation, Partial Correlation, and Mediation
bayesmeta
Bayesian Random-Effects Meta-Analysis
bayesmix
Bayesian Mixture Models with JAGS
BayesMixSurv
Bayesian Mixture Survival Models using Additive Mixture-of-Weibull Hazards, with Lasso Shrinkage and Stratification
BayesNI
BayesNI: Bayesian Testing Procedure for Noninferiority with Binary Endpoints
BayesPiecewiseICAR
Hierarchical Bayesian Model for a Hazard Function
bayesplot
Plotting for Bayesian Models
bayesPop
Probabilistic Population Projection
bayespref
Hierarchical Bayesian analysis of ecological count data
bayesQR
Bayesian quantile regression
bayesreg
Bayesian Regression Models with Continuous Shrinkage Priors
bayess
Bayesian Essentials with R
BayesSAE
Bayesian Analysis of Small Area Estimation
BayesSingleSub
Computation of Bayes factors for interrupted time-series designs
BayesSummaryStatLM
MCMC Sampling of Bayesian Linear Models via Summary Statistics
bayesSurv
Bayesian Survival Regression with Flexible Error and Random Effects Distributions
bayesTFR
Bayesian Fertility Projection
Bayesthresh
Bayesian thresholds mixed-effects models for categorical data
BayesTree
Bayesian Additive Regression Trees
BayesTreePrior
Bayesian Tree Prior Simulation
BayesValidate
BayesValidate Package
BayesVarSel
Bayes Factors, Model Choice and Variable Selection in Linear Models
BayesX
R Utilities Accompanying the Software Package BayesX
BayesXsrc
R Package Distribution of the BayesX C++ Sources
BayHap
Bayesian analysis of haplotype association using Markov Chain Monte Carlo
BayHaz
R Functions for Bayesian Hazard Rate Estimation
BaylorEdPsych
R Package for Baylor University Educational Psychology Quantitative Courses
bayou
Bayesian Fitting of Ornstein-Uhlenbeck Models to Phylogenies
BaySIC
Bayesian Analysis of Significantly Mutated Genes in Cancer
BAYSTAR
On Bayesian analysis of Threshold autoregressive model (BAYSTAR)
BB
Solving and Optimizing Large-Scale Nonlinear Systems
bbefkr
Bayesian bandwidth estimation and semi-metric selection for the functional kernel regression with unknown error density
bbemkr
Bayesian bandwidth estimation for multivariate kernel regression with Gaussian error
BBEST
Bayesian Estimation of Incoherent Neutron Scattering Backgrounds
BBmisc
Miscellaneous Helper Functions for B. Bischl
bbmle
Tools for General Maximum Likelihood Estimation
BBMM
Brownian bridge movement model
bbo
Biogeography-Based Optimization
BBRecapture
Bayesian Behavioural Capture-Recapture Models
bc3net
Gene Regulatory Network Inference with Bc3net
BCA
Business and Customer Analytics
BCBCSF
Bias-Corrected Bayesian Classification with Selected Features
BCDating
Business Cycle Dating and Plotting Tools
BcDiag
Diagnostics Plots for Bicluster Data
BCE
Bayesian composition estimator: estimating sample (taxonomic) composition from biomarker data
BCEA
Bayesian Cost Effectiveness Analysis
BCEE
The Bayesian Causal Effect Estimation Algorithm
BCellMA
B Cell Receptor Somatic Hyper Mutation Analysis
BCEs0
Bayesian Models for Cost-Effectiveness Analysis in the Presence of Structural Zero Costs
Bchron
Radiocarbon Dating, Age-Depth Modelling, Relative Sea Level Rate Estimation, and Non-Parametric Phase Modelling
Bclim
Bayesian Palaeoclimate Reconstruction from Pollen Data
bclust
Bayesian Hierarchical Clustering Using Spike and Slab Models
bcp
Bayesian Analysis of Change Point Problems
bcpa
Behavioral change point analysis of animal movement
bcpmeta
Bayesian Multiple Changepoint Detection Using Metadata
BCRA
Breast Cancer Risk Assessment
bcRep
Advanced Analysis of B Cell Receptor Repertoire Data
bcrm
Bayesian Continual Reassessment Method for Phase I Dose-Escalation Trials
bcROCsurface
Bias-Corrected Methods for Estimating the ROC Surface of Continuous Diagnostic Tests
bcrypt
'Blowfish' Password Hashing Algorithm
BCSub
A Bayesian Semiparametric Factor Analysis Model for Subtype Identification (Clustering)
bcv
Cross-Validation for the SVD (Bi-Cross-Validation)
bda
Density Estimation for Grouped Data
bde
Bounded Density Estimation
BDgraph
Bayesian Structure Learning in Graphical Models using Birth-Death MCMC
bdots
Bootstrapped Differences of Time Series
bdpopt
Optimisation of Bayesian Decision Problems
bdpv
Inference and design for predictive values in binary diagnostic tests
bdrift
Beta Drift Analysis
bdscale
Remove Weekends and Holidays from ggplot2 Axes
bdsmatrix
Routines for Block Diagonal Symmetric matrices
bdvis
Biodiversity Data Visualizations
BDWreg
Bayesian Inference for Discrete Weibull Regression
bdynsys
Bayesian Dynamical System Model
BEACH
Biometric Exploratory Analysis Creation House
beadarrayFilter
Bead filtering for Illumina bead arrays
beadarrayMSV
Analysis of Illumina BeadArray SNP data including MSV markers
beanplot
Visualization via Beanplots (like Boxplot/Stripchart/Violin Plot)
BEANSP
Bayesian Estimate of Age-specific Nest Survival Probabilities
beanz
Bayesian Analysis of Heterogeneous Treatment Effect
bea.R
Bureau of Economic Analysis API
BEDASSLE
Quantifies effects of geo/eco distance on genetic differentiation
BEDMatrix
Matrices Backed by Binary PED Files (PLINK)
bedr
Genomic Region Processing using Tools Such as BEDtools, BEDOPS and Tabix
beepr
Easily Play Notification Sounds on any Platform
beeswarm
The Bee Swarm Plot, an Alternative to Stripchart
belex
Download Historical Data from the Belgrade Stock Exchange
benchden
28 benchmark densities from Berlinet/Devroye (1994)
benchmark
Benchmark Experiments Toolbox
Benchmarking
Benchmark and Frontier Analysis Using DEA and SFA
benchmarkme
Crowd Sourced System Benchmarks
benchmarkmeData
Data Set for the 'benchmarkme' Package
benchr
High Precise Measurement of R Expressions Execution Time
benford.analysis
Benford Analysis for Data Validation and Forensic Analytics
BenfordTests
Statistical Tests for Evaluating Conformity to Benford's Law
bentcableAR
Bent-Cable Regression for Independent Data or Autoregressive Time Series
BEQI2
Benthic Ecosystem Quality Index 2
ber
Batch Effects Removal
Bergm
Bayesian analysis for exponential random graph models
berryFunctions
Function Collection Related to Plotting and Hydrology
Bessel
Bessel -- Bessel Functions Computations and Approximations
BEST
Bayesian Estimation Supersedes the t-Test
bestglm
Best Subset GLM
BetaBit
Mini Games from Adventures of Beta and Bit
betafam
Detecting rare variants for quantitative traits using nuclear families
betalink
Beta-Diversity of Species Interactions
betapart
Partitioning beta diversity into turnover and nestedness components
betaper
Functions to incorporate taxonomic uncertainty on multivariate analyses of ecological data
betareg
Beta Regression
betas
Standardized Beta Coefficients
betategarch
Simulation, Estimation and Forecasting of Beta-Skew-t-EGARCH Models
bethel
Bethel's algorithm.
BeviMed
Bayesian Evaluation of Variant Involvement in Mendelian Disorders
bezier
Bezier Curve and Spline Toolkit
bfa
Bayesian Factor Analysis
bfast
Breaks For Additive Season and Trend (BFAST)
bfork
Basic Unix Process Control
bfp
Bayesian Fractional Polynomials
bgeva
Binary Generalized Extreme Value Additive Models
bglm
Bayesian Estimation in Generalized Linear Models
BGLR
Bayesian Generalized Linear Regression
bgmfiles
Example BGM Files for the Atlantis Ecosystem Model
bgmm
Gaussian Mixture Modeling Algorithms And The Belief-based Mixture Modeling
BGPhazard
Markov Beta and Gamma Processes for Modeling Hazard Rates
BGSIMD
Block Gibbs Sampler with Incomplete Multinomial Distribution
bgsmtr
Bayesian Group Sparse Multi-Task Regression
BH
Boost C++ Header Files
Bhat
General likelihood exploration
BHH2
Useful Functions for Box, Hunter and Hunter II
bhm
Biomarker Threshold Models
biasbetareg
Bias correction of the parameter estimates of the beta regression model
BiasedUrn
Biased Urn Model Distributions
bib2df
Parse a BibTeX File to a Tibble
BiBitR
R Wrapper for Java Implementation of BiBit
bibliometrix
Bibliometric and Co-Citation Analysis Tool
bibliospec
Reading Mass Spectrometric Search Results
bibtex
bibtex parser
biclust
BiCluster Algorithms
BiDimRegression
Calculates the bidimensional regression between two 2D configurations
bifactorial
Inferences for bi- and trifactorial trial designs
bife
Binary Choice Models with Fixed Effects
BIFIEsurvey
Tools for Survey Statistics in Educational Assessment
bigalgebra
BLAS routines for native R matrices and big.matrix objects.
biganalytics
Utilities for 'big.matrix' Objects from Package 'bigmemory'
bigdata
Big Data Analytics
BIGDAWG
Case-Control Analysis of Multi-Allelic Loci
bigFastlm
Fast Linear Models for Objects from the 'bigmemory' Package
bigGP
Distributed Gaussian Process Calculations
biglars
Scalable Least-Angle Regression and Lasso
biglasso
Big Lasso: Extending Lasso Model Fitting to Big Data in R
biglm
bounded memory linear and generalized linear models
bigmemory
Manage Massive Matrices with Shared Memory and Memory-Mapped Files
bigmemory.sri
A shared resource interface for Bigmemory Project packages
bigml
Bindings for the BigML API
bigpca
PCA, Transpose and Multicore Functionality for 'big.matrix' Objects
bigQueryR
Interface with Google BigQuery with Shiny Compatibility
BigQuic
Big Quadratic Inverse Covariance Estimation
bigReg
Generalized Linear Models (GLM) for Large Data Sets
bigrquery
An Interface to Google's 'BigQuery' 'API'
bigRR
Generalized Ridge Regression (with special advantage for p >> n cases)
BigSEM
Constructing Large Systems of Structural Equations
bigsplines
Smoothing Splines for Large Samples
bigstep
Stepwise Selection for Large Data Sets
bigtabulate
Table, Apply, and Split Functionality for Matrix and 'big.matrix' Objects
bigtcr
Nonparametric Analysis of Bivariate Gap Time with Competing Risks
BigTSP
Top Scoring Pair based methods for classification
BigVAR
Dimension Reduction Methods for Multivariate Time Series
bikeshare14
Bay Area Bike Share Trips in 2014
bild
BInary Longitudinal Data
bimetallic
Power for SNP analyses using silver standard cases
bimixt
Estimates Mixture Models for Case-Control Data
Binarize
Binarization of One-Dimensional Data
BinaryEMVS
Variable Selection for Binary Data Using the EM Algorithm
BinaryEPPM
Mean and Variance Modeling of Binary Data
binaryLogic
Binary Logic
binda
Multi-Class Discriminant Analysis using Binary Predictors
bindata
Generation of Artificial Binary Data
bindr
Parametrized Active Bindings
binequality
Methods for Analyzing Binned Income Data
binford
Binford's Hunter-Gatherer Data
bingat
Binary Graph Analysis Tools
binGroup
Evaluation and experimental design for binomial group testing
binhf
Haar-Fisz functions for binomial data
binMto
Asymptotic simultaneous confidence intervals for many-to-one comparisons of proportions
BinNonNor
Data Generation with Binary and Continuous Non-Normal Components
BinNor
Simultaneous Generation of Multivariate Binary and Normal Variates
binom
Binomial Confidence Intervals For Several Parameterizations
binomen
'Taxonomic' Specification and Parsing Methods
binomialcftp
Generates binomial random numbers via the coupling from the past algorithm
binomlogit
Efficient MCMC for Binomial Logit Models
binomSamSize
Confidence intervals and sample size determination for a binomial proportion under simple random sampling and pooled sampling
binomTools
Performing diagnostics on binomial regression models
BinOrdNonNor
Concurrent Generation of Binary, Ordinal and Continuous Data
binr
Cut Numeric Values into Evenly Distributed Groups
binseqtest
Exact Binary Sequential Designs and Analysis
binsmooth
Generate PDFs and CDFs from Binned Data
binst
Data Preprocessing, Binning for Classification and Regression
bio3d
Biological Structure Analysis
Biocomb
Feature Selection and Classification with the Embedded Validation Procedures for Biomedical Data Analysis
Biodem
Biodemography Functions
BiodiversityR
Package for Community Ecology and Suitability Analysis
BIOdry
Multilevel Modeling of Dendroclimatical Fluctuations
BioFTF
Biodiversity Assessment Using Functional Tools
biogas
Process Biogas Data and Predict Biogas Production
biogeo
Point Data Quality Assessment and Coordinate Conversion
BioGeoBEARS
BioGeography with Bayesian (and Likelihood) Evolutionary Analysis in R Scripts
biogram
N-Gram Analysis of Biological Sequences
Biograph
Explore Life Histories
bioimagetools
Some Tools for Imaging
bioinactivation
Simulation of Dynamic Microbial Inactivation
bio.infer
Predict environmental conditions from biological observations
biom
An interface package (beta) for the BIOM file format.
BioMark
Find Biomarkers in Two-Class Discrimination Problems
biomartr
Genomic Data Retrieval with R
BIOMASS
Estimating Above-Ground Biomass and Its Uncertainty in Tropical Forests
biomod2
Ensemble Platform for Species Distribution Modeling
BIOM.utils
Utilities for the BIOM (Biological Observation Matrix) Format
bionetdata
Biological and chemical data networks
BioPET
Biomarker Prognostic Enrichment Tool
BioPhysConnectoR
BioPhysConnectoR
bioplots
Visualization of Overlapping Results with Heatmap
bioPN
Simulation of deterministic and stochastic biochemical reaction networks using Petri Nets
biorxivr
Search and Download Papers from the bioRxiv Preprint Server
bios2mds
From BIOlogical Sequences to MultiDimensional Scaling
biosignalEMG
Tools for Electromyogram Signals (EMG) Analysis
BioStatR
Initiation à la Statistique avec R
biotic
Calculation of Freshwater Biotic Indices
biotools
Tools for Biometry and Applied Statistics in Agricultural Science
bipartite
Visualising Bipartite Networks and Calculating Some (Ecological) Indices
biplotbootGUI
Bootstrap on Classical Biplots and Clustering Disjoint Biplot
BiplotGUI
Interactive Biplots in R
BIPOD
BIPOD (Bayesian Inference for Partially Observed diffusions)
birdnik
Connector for the Wordnik API
birdring
Methods to Analyse Ring Re-Encounter Data
birk
MA Birk's Functions
bisectr
Tools to find bad commits with git bisect
BiSEp
Toolkit to Identify Candidate Synthetic Lethality
bisoreg
Bayesian Isotonic Regression with Bernstein Polynomials
bit
A class for vectors of 1-bit booleans
bit64
A S3 Class for Vectors of 64bit Integers
bitops
Bitwise Operations
BiTrinA
Binarization and Trinarization of One-Dimensional Data
bitrugs
Bayesian Inference of Transmission Routes Using Genome Sequences
BivarP
Estimating the Parameters of Some Bivariate Distributions
bivarRIpower
Sample size calculations for bivariate longitudinal data
BivUnifBin
Generation of Bivariate Uniform Data and Its Relation to Bivariate Binary Data
biwavelet
Conduct Univariate and Bivariate Wavelet Analyses
biwt
Functions to compute the biweight mean vector and covariance & correlation matrices
bizdays
Business Days Calculations and Utilities
bkmr
Bayesian Kernel Machine Regression
BKPC
Bayesian Kernel Projection Classifier
blackbox
Black Box Optimization and Exploration of Parameter Space
BlakerCI
Blaker's Binomial Confidence Limits
BlandAltmanLeh
Plots (Slightly Extended) Bland-Altman Plots
blatr
Send Emails Using 'Blat' for Windows
Blaunet
Calculate and Analyze Blau Status for Measuring Social Distance
blavaan
Bayesian Latent Variable Analysis
BLCOP
Black-Litterman and Copula Opinion Pooling Frameworks
blendedLink
A New Link Function that Blends Two Specified Link Functions
blender
Analyze biotic homogenization of landscapes
blighty
United Kingdom coastlines
blkbox
Data Exploration with Multiple Machine Learning Algorithms
blkergm
Fitting block ERGM given the block structure on social networks
blm
Binomial linear and linear-expit regression
blme
Bayesian Linear Mixed-Effects Models
blmeco
Data Files and Functions Accompanying the Book "Bayesian Data Analysis in Ecology using R, BUGS and Stan"
blockcluster
Coclustering Package for Binary, Categorical, Contingency and Continuous Data-Sets
blockmatrix
blockmatrix: Tools to solve algebraic systems with partitioned matrices
BlockMessage
Creates strings that show a text message in 8 by 8 block letters
blockmodeling
An R package for Generalized and classical blockmodeling of valued networks
blockmodels
Latent and Stochastic Block Model Estimation by a 'V-EM' Algorithm
blockrand
Randomization for block random clinical trials
blocksdesign
Nested and Crossed Block Designs for Unstructured Treatment Sets
blockseg
Two Dimensional Change-Points Detection
blockTools
Block, Assign, and Diagnose Potential Interference in Randomized Experiments
Blossom
Statistical Comparisons with Distance-Function Based Permutation Tests
BLR
Bayesian Linear Regression
blsAPI
Request Data from the U.S. Bureau of Labor Statistics API
blscrapeR
An API Wrapper for the Bureau of Labor Statistics (BLS)
BMA
Bayesian Model Averaging
bmd
Benchmark dose analysis for dose-response data
bmem
Mediation analysis with missing data using bootstrap
bmeta
Bayesian Meta-Analysis and Meta-Regression
BMhyd
PCM for Hybridization
Bmix
Bayesian Sampling for Stick-Breaking Mixtures
bmk
MCMC diagnostics package
bmlm
Bayesian Multilevel Mediation
bmmix
Bayesian multinomial mixture
BMN
The pseudo-likelihood method for pairwise binary markov networks
bmp
Read Windows Bitmap (BMP) images
bmrm
Bundle Methods for Regularized Risk Minimization Package
BMRV
Bayesian Models for Rare Variant Association Analysis
BMS
Bayesian Model Averaging Library
BNDataGenerator
Data Generator based on Bayesian Network Model
bnlearn
Bayesian Network Structure Learning, Parameter Learning and Inference
bnnSurvival
Bagged k-Nearest Neighbors Survival Prediction
bnormnlr
Bayesian Estimation for Normal Heteroscedastic Nonlinear Regression Models
BNPdensity
Ferguson-Klass Type Algorithm for Posterior Normalized Random Measures
BNPMIXcluster
Bayesian Nonparametric Model for Clustering with Mixed Scale Variables
bnpmr
Bayesian monotonic nonparametric regression
BNPTSclust
A Bayesian Nonparametric Algorithm for Time Series Clustering
BNSP
Bayesian Non- and Semi-Parametric Model Fitting
bnspatial
Spatial Implementation of Bayesian Networks and Mapping
bnstruct
Bayesian Network Structure Learning from Data with Missing Values
boa
Bayesian Output Analysis Program (BOA) for MCMC
BoardGames
Board Games and Tools for Building Board Games
bodenmiller
Profilling of Peripheral Blood Mononuclear Cells using CyTOF
BOG
Bacterium and Virus Analysis of Orthologous Groups (BOG) is a Package for Identifying Differentially Regulated Genes in the Light of Gene Functions
boilerpipeR
Interface to the Boilerpipe Java Library
BOIN
Bayesian Optimal INterval (BOIN) Design for Single-Agent and Drug- Combination Phase I Clinical Trials
bold
Interface to Bold Systems 'API'
Bolstad
Functions for Elementary Bayesian Inference
Bolstad2
Bolstad functions
BonEV
An Improved Multiple Testing Procedure for Controlling False Discovery Rates
bookdown
Authoring Books and Technical Documents with R Markdown
boolean3
Boolean Binary Response Models
BoolNet
Construction, Simulation and Analysis of Boolean Networks
Boom
Bayesian Object Oriented Modeling
BoomSpikeSlab
MCMC for Spike and Slab Regression
boostmtree
Boosted Multivariate Trees for Longitudinal Data
boostr
A modular framework to bag or boost any estimation procedure.
boostSeq
Optimized GWAS cohort subset selection for resequencing studies
boot
Bootstrap Functions (Originally by Angelo Canty for S)
bootES
Bootstrap Effect Sizes
bootLR
Bootstrapped Confidence Intervals for (Negative) Likelihood Ratio Tests
BootMRMR
Bootstrap-MRMR Technique for Informative Gene Selection
bootnet
Bootstrap Methods for Various Network Estimation Routines
BootPR
Bootstrap Prediction Intervals and Bias-Corrected Forecasting
bootRes
Bootstrapped Response and Correlation Functions
bootruin
A bootstrap test for the probability of ruin in the classical risk process
bootspecdens
Testing equality of spectral densities
bootsPLS
Bootstrap Subsamplings of Sparse Partial Least Squares - Discriminant Analysis for Classification and Signature Identification
bootStepAIC
Bootstrap stepAIC
bootstrap
Functions for the Book "An Introduction to the Bootstrap"
bootSVD
Fast, Exact Bootstrap Principal Component Analysis for High Dimensional Data
bootTimeInference
Robust Performance Hypothesis Testing with the Sharpe Ratio
boottol
Bootstrap Tolerance Levels for Credit Scoring Validation Statistics
BootWPTOS
Test Stationarity using Bootstrap Wavelet Packet Tests
boral
Bayesian Ordination and Regression AnaLysis
Boruta
Wrapper Algorithm for All Relevant Feature Selection
BoSSA
a Bunch of Structure and Sequence Analysis
boussinesq
Analytic Solutions for (ground-water) Boussinesq Equation
boxoffice
Downloads Box Office Information for Given Dates (How Much Each Movie Earned in Theaters)
boxplotdbl
Double Box Plot for Two-Axes Correlation
boxr
Interface for the 'Box.com API'
bpa
Basic Pattern Analysis
bpca
Biplot of Multivariate Data Based on Principal Components Analysis
bpcp
Beta Product Confidence Procedure for Right Censored Data
bPeaks
bPeaks: an intuitive peak-calling strategy to detect transcription factor binding sites from ChIP-seq data in small eukaryotic genomes
BPEC
Bayesian Phylogeographic and Ecological Clustering
bpkde
Back-Projected Kernel Density Estimation
bqtl
Bayesian QTL Mapping Toolkit
BradleyTerry2
Bradley-Terry Models
braidReports
Visualize Combined Action Response Surfaces and Report BRAID Analyses
braidrm
Fitting Dose Response with the BRAID Combined Action Model
BrailleR
Improved Access for Blind Users
brainGraph
Graph Theory Analysis of Brain MRI Data
brainR
Helper functions to misc3d and rgl packages for brain imaging
brainwaver
Basic wavelet analysis of multivariate time series with a visualisation and parametrisation using graph theory.
Branching
Simulation and Estimation for Branching Processes
braQCA
Bootstrapped Robustness Assessment for Qualitative Comparative Analysis
brea
Bayesian Recurrent Event Analysis
breakage
SICM pipette tip geometry estimation
breakaway
Species Richness Estimation and Modeling
breakpoint
An R Package for Multiple Break-Point Detection via the Cross-Entropy Method
bReeze
Functions for wind resource assessment
brew
Templating Framework for Report Generation
brewdata
Extracting Usable Data from the Grad Cafe Results Search
brglm
Bias reduction in binomial-response generalized linear models.
bride
Brier score decomposition of probabilistic forecasts for binary events
bridgedist
An Implementation of the Bridge Distribution with Logit-Link as in Wang and Louis (2003)
briskaR
Biological Risk Assessment
brm
Binary Regression Model
brms
Bayesian Regression Models using Stan
brnn
Bayesian Regularization for Feed-Forward Neural Networks
Brobdingnag
Very large numbers in R
broman
Karl Broman's R Code
broom
Convert Statistical Analysis Objects into Tidy Data Frames
brotli
A Compression Format Optimized for the Web
brr
Bayesian Inference on the Ratio of Two Poisson Rates
brranching
Fetch 'Phylogenies' from Many Sources
BRugs
Interface to the 'OpenBUGS' MCMC Software
BSagri
Statistical methods for safety assessment in agricultural field trials
bsam
Bayesian State-Space Models for Animal Movement
BSDA
Basic Statistics and Data Analysis
bsearchtools
Binary Search Tools
BSGS
Bayesian Sparse Group Selection
BSGW
Bayesian Survival Model with Lasso Shrinkage Using Generalized Weibull Regression
bshazard
Nonparametric Smoothing of the Hazard Function
BsMD
Bayes Screening and Model Discrimination
bspec
Bayesian Spectral Inference
bspmma
bspmma: Bayesian Semiparametric Models for Meta-Analysis
BSquare
Bayesian Simultaneous Quantile Regression
BSSasymp
Asymptotic Covariance Matrices of Some BSS Mixing and Unmixing Matrix Estimates
bssn
Birnbaum-Saunders Model Based on Skew-Normal Distribution
bst
Gradient Boosting
bsts
Bayesian Structural Time Series
btb
Beyond the Border
btergm
Temporal Exponential Random Graph Models by Bootstrapped Pseudolikelihood
btf
Estimates univariate function via Bayesian trend filtering
BTLLasso
Modelling Heterogeneity in Paired Comparison Data
BTR
Training and Analysing Asynchronous Boolean Models
BTSPAS
Bayesian Time-Strat. Population Analysis
BTYD
Implementing Buy 'Til You Die Models
bujar
Buckley-James Regression for Survival Data with High-Dimensional Covariates
bunchr
Analyze Bunching in a Kink or Notch Setting
bundesligR
All Final Tables of the Bundesliga
burnr
Advanced Fire History Analysis in R
BurStFin
Burns Statistics Financial
BurStMisc
Burns Statistics Miscellaneous
bursts
Markov model for bursty behavior in streams
BuyseTest
Generalized Pairwise Comparisons
bvarsv
Bayesian Analysis of a Vector Autoregressive Model with Stochastic Volatility and Time-Varying Parameters
bvenn
A Simple alternative to proportional Venn diagrams
bvls
The Stark-Parker algorithm for bounded-variable least squares
bvpSolve
Solvers for Boundary Value Problems of Differential Equations
BVS
Bayesian Variant Selection: Bayesian Model Uncertainty Techniques for Genetic Association Studies
bWGR
Bagging Whole-Genome Regression
BWStest
Baumgartner Weiss Schindler Test of Equal Distributions
bytescircle
Statistics About Bytes Contained in a File as a Circle Plot
c060
Extended Inference for Lasso and Elastic-Net Regularized Cox and Generalized Linear Models
c3net
Infering large-scale gene networks with C3NET
C50
C5.0 Decision Trees and Rule-Based Models
ca
Simple, Multiple and Joint Correspondence Analysis
cablecuttr
A CanIStream.It API Wrapper
cabootcrs
Bootstrap Confidence Regions for Correspondence Analysis.
cacIRT
Classification Accuracy and Consistency under Item Response Theory
CaDENCE
Conditional Density Estimation Network Construction and Evaluation
CADFtest
This package performs the CADF unit root test proposed in Hansen (1995).
CADStat
Provides a GUI to Several Statistical Methods
cAIC4
Conditional Akaike information criterion for lme4
Cairo
R graphics device using cairo graphics library for creating high-quality bitmap (PNG, JPEG, TIFF), vector (PDF, SVG, PostScript) and display (X11 and Win32) output
cairoDevice
Embeddable Cairo Graphics Device Driver
calACS
Calculations for All Common Subsequences
Calculator.LR.FNs
Calculator for LR Fuzzy Numbers
CALF
Coarse Approximation Linear Function
CALIBERrfimpute
Multiple imputation using MICE and Random Forest
calibrar
Automated Parameter Estimation for Complex (Ecological) Models
calibrate
Calibration of Scatterplot and Biplot Axes
CalibrateSSB
Weighting and Estimation for Panel Data with Non-Response
calibrator
Bayesian calibration of complex computer codes
callr
Call R from R
calmate
Improved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation
CAM
Causal Additive Model (CAM)
CAMAN
Finite Mixture Models and Meta-Analysis Tools - Based on C.A.MAN
camel
Calibrated Machine Learning
camsRad
Client for CAMS Radiation Service
camtrapR
Camera Trap Data Management and Preparation of Occupancy and Spatial Capture-Recapture Analyses
cancerGI
Analyses of Cancer Gene Interaction
cancerTiming
Estimation of Temporal Ordering of Cancer Abnormalities
candisc
Visualizing Generalized Canonical Discriminant and Canonical Correlation Analysis
Canopy
Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing
CANSIM2R
Directly Extracts Complete CANSIM Data Tables
cape
Combined Analysis of Pleiotropy and Epistasis
caper
Comparative Analyses of Phylogenetics and Evolution in R
capm
Companion Animal Population Management
captioner
Numbers Figures and Creates Simple Captions
captr
Client for the Captricity API
capushe
CAlibrating Penalities Using Slope HEuristics
capwire
Estimates population size from non-invasive sampling
car
Companion to Applied Regression
CARBayes
Spatial Generalised Linear Mixed Models for Areal Unit Data
CARBayesdata
Data Used in the Vignettes Accompanying the CARBayes and CARBayesST Packages
CARBayesST
Spatio-Temporal Generalised Linear Mixed Models for Areal Unit Data
carcass
Estimation of the Number of Fatalities from Carcass Searches
cardidates
Identification of Cardinal Dates in Ecological Time Series
cardioModel
Cardiovascular Safety Exposure-Response Modeling in Early-Phase Clinical Studies
care
High-Dimensional Regression and CAR Score Variable Selection
CARE1
Statistical package for population size estimation in capture-recapture models.
caret
Classification and Regression Training
caretEnsemble
Ensembles of Caret Models
caribou
Estimation of caribou abundance based on large scale aggregations monitored by radio telemetry
CarletonStats
Functions for Statistics Classes at Carleton College
CARLIT
Ecological Quality Ratios Calculation and Plot
caroline
A Collection of Database, Data Structure, Visualization, and Utility Functions for R
carpenter
Build Common Tables of Summary Statistics for Reports
caRpools
CRISPR AnalyzeR for Pooled CRISPR Screens
CARrampsOcl
Reparameterized and marginalized posterior sampling for conditional autoregressive models, OpenCL implementation
cartogram
Create Cartograms with R
cartography
Thematic Cartography
carx
Censored Autoregressive Model with Exogenous Covariates
caschrono
Sries Temporelles Avec R
caseMatch
Identify Similar Cases for Qualitative Case Studies
cat
Analysis of categorical-variable datasets with missing values
catdap
Categorical Data Analysis Program Package
catdata
Categorical Data
CatDyn
Fishery Stock Assessment by Generalized Depletion Models
cate
High Dimensional Factor Analysis and Confounder Adjusted Testing and Estimation
catenary
Fits a Catenary to Given Points
CatEncoders
Encoders for Categorical Variables
CateSelection
Categorical Variable Selection Methods
cati
Community Assembly by Traits: Individuals and Beyond
catIrt
An R Package for Simulating IRT-Based Computerized Adaptive Tests
catlearn
Formal Modeling for Psychology
catnet
Categorical Bayesian Network Inference
caTools
Tools: moving window statistics, GIF, Base64, ROC AUC, etc.
catR
Generation of IRT Response Patterns under Computerized Adaptive Testing
catspec
Special models for categorical variables
causaldrf
Tools for Estimating Causal Dose Response Functions
causaleffect
Deriving Expressions of Joint Interventional Distributions and Transport Formulas in Causal Models
CausalFX
Methods for Estimating Causal Effects from Observational Data
CausalGAM
Estimation of Causal Effects with Generalized Additive Models
causalsens
Selection Bias Approach to Sensitivity Analysis for Causal Effects
Causata
Analysis utilities for binary classification and Causata users.
CAvariants
Correspondence Analysis Variants
cba
Clustering for Business Analytics
CBPS
Covariate Balancing Propensity Score
cbsodataR
Statistics Netherlands (CBS) Open Data API Client
CCA
Canonical correlation analysis
CCAGFA
Bayesian Canonical Correlation Analysis and Group Factor Analysis
ccaPP
(Robust) Canonical Correlation Analysis via Projection Pursuit
cccd
Class Cover Catch Digraphs
ccChooser
Developing a core collections
cccp
Cone Constrained Convex Problems
cccrm
Concordance Correlation Coefficient for Repeated (and Non-Repeated) Measures
ccda
Combined Cluster and Discriminant Analysis
ccdrAlgorithm
CCDr Algorithm for Learning Sparse Gaussian Bayesian Networks
ccgarch
Conditional Correlation GARCH models
cchs
Cox Model for Case-Cohort Data with Stratified Subcohort-Selection
cclust
Convex Clustering Methods and Clustering Indexes
CCM
Correlation classification method (CCM)
CCMnet
Simulate Congruence Class Model for Networks
CCP
Significance Tests for Canonical Correlation Analysis (CCA)
CCpop
One and two locus GWAS of binary phenotype with case-control-population design
CCTpack
Cultural Consensus Theory applications to data
cda
Coupled-Dipole Approximation for Electromagnetic Scattering by Three-Dimensional Clusters of Sub-Wavelength Particles
cdb
Reading and Writing Constant DataBases
cdcfluview
Retrieve U.S. Flu Season Data from the CDC FluView Portal
cdcsis
Conditional Distance Correlation and Its Related Feature Screening Method
CDF.PSIdekick
Evaluate Differentially Private Algorithms for Publishing Cumulative Distribution Functions
cdfquantreg
Quantile Regression for Random Variables on the Unit Interval
CDFt
Statistical downscaling through CDF-transform
CDLasso
Coordinate Descent Algorithms for Lasso Penalized L1, L2, and Logistic Regression
cdlTools
Tools to Download and Work with USDA Cropscape Data
CDM
Cognitive Diagnosis Modeling
CDNmoney
Components of Canadian Monetary and Credit Aggregates
cdom
R Functions to Model CDOM Spectra
CDROM
Phylogenetically Classifies Retention Mechanisms of Duplicate Genes from Gene Expression Data
cds
Constrained Dual Scaling for Detecting Response Styles
CDVine
Statistical Inference of C- And D-Vine Copulas
CEC
Cross-Entropy Clustering
cec2005benchmark
Benchmark for the CEC 2005 Special Session on Real-Parameter Optimization
cec2013
Benchmark functions for the Special Session and Competition on Real-Parameter Single Objective Optimization at CEC-2013
CEGO
Combinatorial Efficient Global Optimization
celestial
Collection of Common Astronomical Conversion Routines and Functions
cellranger
Translate Spreadsheet Cell Ranges to Rows and Columns
CellularAutomaton
One-Dimensional Cellular Automata
cellVolumeDist
Functions to fit cell volume distributions and thereby estimate cell growth rates and division times
cem
Coarsened Exact Matching
cems
Conditional Expectation Manifolds
CensMixReg
Censored Linear Mixture Regression Models
censNID
censored NID samples
censorcopula
Estimate Parameter of Bivariate Copula
censReg
Censored Regression (Tobit) Models
CensRegMod
Fits Normal and Student-t Censored Regression Model
CensSpatial
Censored Spatial Models
censusGeography
Changes United States Census Geographic Code into Name of Location
censusr
Collect Data from the Census API
cents
Censored time series
CEoptim
Cross-Entropy R Package for Optimization
CePa
Centrality-based pathway enrichment
CepLDA
Discriminant Analysis of Time Series in the Presence of Within-Group Spectral Variability
cepp
Context Driven Exploratory Projection Pursuit
CerioliOutlierDetection
Outlier Detection Using the Iterated RMCD Method of Cerioli (2010)
cernn
Covariance Estimation Regularized by Nuclear Norm Penalties
CFC
Cause-Specific Framework for Competing-Risk Analysis
CfEstimateQuantiles
Estimate quantiles using any order Cornish-Fisher expansion
cffdrs
Canadian Forest Fire Danger Rating System
cg
Compare Groups, Analytically and Graphically
cgam
Constrained Generalized Additive Model
cgAUC
Calculate AUC-type measure when gold standard is continuous and the corresponding optimal linear combination of variables with respect to it.
cgdsr
R-Based API for Accessing the MSKCC Cancer Genomics Data Server (CGDS)
cggd
Continuous Generalized Gradient Descent
cgh
Microarray CGH analysis using the Smith-Waterman algorithm
cghFLasso
Detecting hot spot on CGH array data with fused lasso regression.
cghseg
Segmentation Methods for Array CGH Analysis
CGP
Composite Gaussian process models
cgwtools
Miscellaneous Tools
ChainLadder
Statistical Methods and Models for Claims Reserving in General Insurance
changepoint
Methods for Changepoint Detection
changepoint.np
Methods for Nonparametric Changepoint Detection
ChangepointTesting
Change Point Estimation for Clustered Signals
ChannelAttribution
Markov Model for the Online Multi-Channel Attribution Problem
ChannelAttributionApp
Shiny Web Application for the Multichannel Attribution Problem
Chaos01
0-1 Test for Chaos
ChaosGame
Chaos Game
ChargeTransport
Charge Transfer Rates and Charge Carrier Mobilities
CHAT
Clonal Heterogeneity Analysis Tool
CHCN
Canadian Historical Climate Network
cheb
Discrete Linear Chebyshev Approximation
chebpol
Multivariate Chebyshev Interpolation
CheckDigit
Calculate and verify check digits
checkmate
Fast and Versatile Argument Checks
checkpoint
Install Packages from Snapshots on the Checkpoint Server for Reproducibility
cheddar
Analysis and Visualisation of Ecological Communities
chemCal
Calibration Functions for Analytical Chemistry
chemometrics
Multivariate Statistical Analysis in Chemometrics
ChemometricsWithR
Chemometrics with R - Multivariate Data Analysis in the Natural Sciences and Life Sciences
ChemometricsWithRData
Data for package ChemometricsWithR
ChemoSpec
Exploratory Chemometrics for Spectroscopy
cherry
Multiple Testing Methods for Exploratory Research
CHFF
Closest History Flow Field Forecasting for Bivariate Time Series
chi
The Chi Distribution
childsds
Calculation of standard deviation scores adduced from different growth standards
chillR
Statistical Methods for Phenology Analysis in Temperate Fruit Trees
chipPCR
Toolkit of Helper Functions to Pre-Process Amplification Data
ChIPtest
Nonparametric Methods for Identifying Differential Enrichment Regions with ChIP-Seq Data
chngpt
Change Point Regression
CHNOSZ
Chemical Thermodynamics and Activity Diagrams
choiceDes
Design Functions for Choice Studies
ChoiceModelR
Choice Modeling in R
choplump
Choplump tests
chopthin
The Chopthin Resampler
chords
Estimation in respondent driven samples.
choroplethr
Simplify the Creation of Choropleth Maps in R
choroplethrAdmin1
Contains an Administrative-Level-1 Map of the World
choroplethrMaps
Contains maps used by the choroplethr package
chromer
Interface to Chromosome Counts Database API
chromoR
Analysis of chromosomal interactions data (correction, segmentation and comparison)
chron
Chronological Objects which can Handle Dates and Times
CHsharp
Choi and Hall Style Data Sharpening
chunked
Chunkwise Text-File Processing for 'dplyr'
CIDnetworks
Generative Models for Complex Networks with Conditionally Independent Dyadic Structure
CIFsmry
Weighted summary of cumulative incidence functions
cin
Causal Inference for Neuroscience
CINID
Curculionidae INstar IDentification
CINOEDV
Co-Information based N-Order Epistasis Detector and Visualizer
CircE
Circumplex models Estimation
circlize
Circular Visualization
CircNNTSR
Statistical Analysis of Circular Data using Nonnegative Trigonometric Sums (NNTS) Models
CircOutlier
Detection of Outliers in Circular-Circular Regression
CircStats
Circular Statistics, from "Topics in circular Statistics" (2001)
circular
Circular Statistics
cIRT
Choice Item Response Theory
cit
Causal Inference Test
CITAN
CITation ANalysis Toolpack
citbcmst
CIT Breast Cancer Molecular SubTypes Prediction
citccmst
CIT Colon Cancer Molecular SubTypes Prediction
Cite
An RStudio Addin to Insert BibTex Citation in Rmarkdown Documents
citr
'RStudio' Add-in to Insert Markdown Citations
CityPlot
Visualization of structure and contents of a database
cjoint
AMCE Estimator for Conjoint Experiments
ckanr
Client for the Comprehensive Knowledge Archive Network ('CKAN') 'API'
Ckmeans.1d.dp
Optimal and Fast Univariate k-Means Clustering
cladoRcpp
C++ implementations of phylogenetic cladogenesis calculations
ClamR
Time Series Modeling for Climate Change Proxies
clarifai
Access to Clarifai API
class
Functions for Classification
classGraph
Construct Graphs of S4 Class Hierarchies
classifly
Explore classification models in high dimensions
classify
Classification Accuracy and Consistency under IRT models.
classInt
Choose Univariate Class Intervals
classyfire
Robust multivariate classification using highly optimised SVM ensembles
cleangeo
Cleaning Geometries from Spatial Objects
cleanNLP
A Tidy Data Model for Natural Language Processing
clere
Simultaneous Variables Clustering and Regression
clhs
Conditioned Latin Hypercube Sampling
ClickClust
Model-Based Clustering of Categorical Sequences
clickR
Fix Data and Create Report Tables from Different Objects
clickstream
Analyzes Clickstreams Based on Markov Chains
clifro
Easily Download and Visualise Climate Data from CliFlo
clikcorr
Censoring Data and Likelihood-Based Correlation Estimation
climatol
Climate Tools (Series Homogenization and Derived Products)
climbeR
Calculate Average Minimal Depth of a Maximal Subtree for 'ranger' Package Forests
ClimClass
Climate Classification According to Several Indices
climdex.pcic
PCIC Implementation of Climdex Routines
ClimDown
Climate Downscaling Library for Daily Climate Model Output
clime
Constrained L1-minimization for Inverse (covariance) Matrix Estimation
climextRemes
Tools for Analyzing Climate Extremes
climtrends
Statistical Methods for Climate Sciences
climwin
Climate Window Analysis
clinfun
Clinical Trial Design and Data Analysis Functions
clinsig
Clinical Significance Functions
clinUtiDNA
Clinical Utility of DNA Testing
clipr
Read and Write from the System Clipboard
clisymbols
Unicode Symbols at the R Prompt
CLME
Constrained Inference for Linear Mixed Effects Models
clogitboost
Boosting Conditional Logit Model
clogitL1
Fitting exact conditional logistic regression with lasso and elastic net penalties.
clogitLasso
Lasso Estimation of Conditional Logistic Regression Models for Matched Case-Control Studies
cloudUtil
Cloud Utilization Plots
clpAPI
R Interface to C API of COIN-OR Clp
CLSOCP
A smoothing Newton method SOCP solver
clttools
Central Limit Theorem Experiments (Theoretical and Simulation)
clubSandwich
Cluster-Robust (Sandwich) Variance Estimators with Small-Sample Corrections
clue
Cluster Ensembles
ClueR
CLUster Evaluation (CLUE)
clues
Clustering Method Based on Local
CluMix
Clustering and Visualization of Mixed-Type Data
clusrank
Wilcoxon Rank Sum Test for Clustered Data
clust.bin.pair
Statistical Methods for Analyzing Clustered Matched Pair Data
cluster
"Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al.
clusterCrit
Clustering Indices
cluster.datasets
Cluster Analysis Data Sets
ClusteredMutations
Location and Visualization of Clustered Somatic Mutations
clusterfly
Explore clustering interactively using R and GGobi
clusterGeneration
Random Cluster Generation (with Specified Degree of Separation)
clusterGenomics
Identifying clusters in genomics data by recursive partitioning
clusterhap
Clustering Genotypes in Haplotypes
clustering.sc.dp
Optimal Distance-Based Clustering for Multidimensional Data with Sequential Constraint
clusternomics
Integrative Clustering for Heterogeneous Biomedical Datasets
clusterPower
Power calculations for cluster-randomized and cluster-randomized crossover trials
ClusterR
Gaussian Mixture Models, K-Means, Mini-Batch-Kmeans and K-Medoids Clustering
ClusterRankTest
Rank Tests for Clustered Data
clusterRepro
Reproducibility of gene expression clusters
clusterSEs
Calculate Cluster-Robust p-Values and Confidence Intervals
clusterSim
Searching for Optimal Clustering Procedure for a Data Set
ClusterStability
Assessment of Stability of Individual Objects or Clusters in Partitioning Solutions
clustertend
Check the Clustering Tendency
clusteval
Evaluation of Clustering Algorithms
ClustGeo
Clustering of Observations with Geographical Constraints
clustMD
Model Based Clustering for Mixed Data
clustMixType
k-Prototypes Clustering for Mixed Variable-Type Data
ClustMMDD
Variable Selection in Clustering by Mixture Models for Discrete Data
ClustOfVar
Clustering of variables
clustrd
Methods for Joint Dimension Reduction and Clustering
clustsig
Significant Cluster Analysis
ClustVarLV
Clustering of Variables Around Latent Variables
clustvarsel
Variable Selection for Model-Based Clustering
clv
Cluster Validation Techniques
clValid
Validation of Clustering Results
cmaes
Covariance Matrix Adapting Evolutionary Strategy
cmaesr
Covariance Matrix Adaptation Evolution Strategy
CMC
Cronbach-Mesbah Curve
CMF
Collective matrix factorization
cmm
Categorical Marginal Models
cmna
Computational Methods for Numerical Analysis
CMPControl
Control Charts for Conway-Maxwell-Poisson Distribution
CMplot
Circle Manhattan Plot
cmprsk
Subdistribution Analysis of Competing Risks
cmprskQR
Analysis of Competing Risks Using Quantile Regressions
cmrutils
Misc Functions of the Center for the Mathematical Research
cmsaf
Tools for CM SAF NetCDF Data
cmvnorm
The Complex Multivariate Gaussian Distribution
cna
A Package for Coincidence Analysis (CNA)
cncaGUI
Canonical Non-Symmetrical Correspondence Analysis in R
cnmlcd
Maximum Likelihood Estimation of a Log-Concave Density Function
CNOGpro
Copy Numbers of Genes in prokaryotes
CNprep
Pre-process DNA Copy Number (CN) Data for Detection of CN Events
CNVassoc
Association Analysis of CNV Data and Imputed SNPs
CNVassocData
Example data sets for association analysis of CNV data
coala
A Framework for Coalescent Simulation
coalescentMCMC
MCMC Algorithms for the Coalescent
coarseDataTools
A Collection of Functions to Help with Analysis of Coarsely Observed Data
cobalt
Covariate Balance Tables and Plots
COBRA
Nonlinear Aggregation of Predictors
cobs
COnstrained B-Splines (Sparse Matrix Based)
CoClust
Copula Based Cluster Analysis
COCONUT
COmbat CO-Normalization Using conTrols (COCONUT)
cocor
Comparing Correlations
cocoreg
Extracts Shared Variation in Collections of Datasets Using Regression Models
cocorresp
Co-Correspondence Analysis Methods
cocron
Statistical Comparisons of Two or more Alpha Coefficients
coda
Output Analysis and Diagnostics for MCMC
codadiags
Markov chain Monte Carlo burn-in based on "bridge" statistics
cOde
Automated C Code Generation for Use with the 'deSolve' and 'bvpSolve' Packages
codep
Multiscale Codependence Analysis
codetools
Code Analysis Tools for R
codingMatrices
Alternative Factor Coding Matrices for Linear Model Formulae
codyn
Community Dynamics Metrics
coefficientalpha
Robust Coefficient Alpha and Omega with Missing and Non-Normal Data
coefplot
Plots Coefficients from Fitted Models
coenocliner
Coenocline Simulation
coenoflex
Gradient-Based Coenospace Vegetation Simulator
coexist
Species coexistence modeling and analysis
cofeatureR
Generate Cofeature Matrices
CoImp
Copula Based Imputation Method
coin
Conditional Inference Procedures in a Permutation Test Framework
CoinMinD
Simultaneous Confidence Interval for Multinomial Proportion
cointmonitoR
Consistent Monitoring of Stationarity and Cointegrating Relationships
cointReg
Parameter Estimation and Inference in a Cointegrating Regression
cold
Count Longitudinal Data
colf
Constrained Optimization on Linear Function
CollapsABEL
Generalized CDH (GCDH) Analysis
CollocInfer
Collocation Inference for Dynamic Systems
collUtils
Auxiliary Package for Package 'CollapsABEL'
coloc
Colocalisation tests of two genetic traits
coloredICA
Implementation of Colored Independent Component Analysis and Spatial Colored Independent Component Analysis
colorfulVennPlot
Plot and add custom coloring to Venn diagrams for 2-dimensional, 3-dimensional and 4-dimensional data.
colorhcplot
Colorful Hierarchical Clustering Dendrograms
colormap
Color Palettes using Colormaps Node Module
ColorPalette
Color Palettes Generator
colorplaner
A 'ggplot2' Extension to Visualize Two Variables per Color Aesthetic Through Color Space Projections
colorRamps
Builds color tables
colorscience
Color Science Methods and Data
colorspace
Color Space Manipulation
colorSpec
Color Calculations with Emphasis on Spectral Data
colortools
Tools for colors in a Hue-Saturation-Value (HSV) color model
colourlovers
R Client for the COLOURlovers API
colourpicker
A Colour Picker Widget for Shiny Apps, RStudio, R-markdown, and 'htmlwidgets'
colourvision
Colour Vision Models
comato
Analysis of Concept Maps
COMBIA
Synergy/Antagonism Analyses of Drug Combinations
combinat
combinatorics utilities
Combine
Game-Theoretic Probability Combination
CombinePortfolio
Estimation of Optimal Portfolio Weights by Combining Simple Portfolio Strategies
CombinePValue
Combine a Vector of Correlated p-values
CombinS
Construction Methods of some Series of PBIB Designs
combiter
Combinatorics Iterators
CombMSC
Combined Model Selection Criteria
comclim
Community climate statistics.
cometExactTest
Exact Test from the Combinations of Mutually Exclusive Alterations (CoMEt) Algorithm
comf
Functions for Thermal Comfort Research
ComICS
Computational Methods for Immune Cell-Type Subsets
commandr
Command pattern in R
CommEcol
Community Ecology Analyses
commentr
Print Nicely Formatted Comments for Use in Script Files
CommonJavaJars
Useful libraries for building a Java based GUI under R
commonmark
High Performance CommonMark and Github Markdown Rendering in R
CommonTrend
Extract and plot common trends from a cointegration system. Calculate P-value for Johansen Statistics.
CommT
Comparative Phylogeographic Analysis using the Community Tree Framework
COMMUNAL
Robust Selection of Cluster Number K
CommunityCorrelogram
Ecological Community Correlogram
Comp2ROC
Compare Two ROC Curves that Intersect
compactr
Creates empty plots with compact axis notation
compare
Comparing Objects for Differences
compareC
Compare Two Correlated C Indices with Right-censored Survival Outcome
CompareCausalNetworks
Interface to Diverse Estimation Methods of Causal Networks
compareDF
Do a Git Style Diff of the Rows Between Two Dataframes with Similar Structure
compareGroups
Descriptive Analysis by Groups
compareODM
comparison of medical forms in CDISC ODM format
CompareTests
Correct for Verification Bias in Diagnostic Accuracy & Agreement
comparison
Multivariate likelihood ratio calculation and evaluation
compeir
Event-specific incidence rates for competing risks data
compendiumdb
Tools for Retrieval and Storage of Functional Genomics Data
compete
Analyzing Social Hierarchies
CompGLM
Conway-Maxwell-Poisson GLM and distribution functions
compHclust
Complementary Hierarchical Clustering
Compind
Composite Indicators Functions
ComplexAnalysis
Numerically Evaluate Integrals and Derivatives (also Higher Order) of Vector- And Complex-Valued Functions
complexplus
Functions of Complex or Real Variable
complmrob
Robust Linear Regression with Compositional Data as Covariates
CompLognormal
Functions for actuarial scientists
compoisson
Conway-Maxwell-Poisson Distribution
COMPoissonReg
Conway-Maxwell Poisson (COM-Poisson) Regression
Compositional
Compositional Data Analysis
compositions
Compositional Data Analysis
compound.Cox
Estimation and Gene Selection Based on the Compound Covariate Method Under the Cox Proportional Hazard Model
Compounding
Computing Continuous Distributions
CompQuadForm
Distribution Function of Quadratic Forms in Normal Variables
CompR
Paired Comparison Data Analysis
CompRandFld
Composite-Likelihood Based Analysis of Random Fields
compute.es
Compute Effect Sizes
Conake
Continuous Associated Kernel Estimation
concatenate
Human-Friendly Text from Unknown Strings
conclust
Pairwise Constraints Clustering
ConConPiWiFun
Optimisation with Continuous Convex Piecewise (Linear and Quadratic) Functions
concor
Concordance
concordance
Product Concordance
concreg
Concordance regression
cond
Approximate conditional inference for logistic and loglinear models
condformat
Conditional Formatting in Data Frames
condGEE
Parameter estimation in conditional GEE for recurrent event gap times
condmixt
Conditional Density Estimation with Neural Network Conditional Mixtures
condMVNorm
Conditional Multivariate Normal Distribution
CONDOP
Condition-Dependent Operon Predictions
CondReg
Condition Number Regularized Covariance Estimation
condSURV
Estimation of the Conditional Survival Function for Ordered Multivariate Failure Time Data
condvis
Conditional Visualization for Statistical Models
coneproj
Primal or Dual Cone Projections with Routines for Constrained Regression
conf.design
Construction of factorial designs
confidence
Confidence Estimation of Environmental State Classifications
config
Manage Environment Specific Configuration Values
conformal
Conformal Prediction for Regression and Classification
confreq
Configural Frequencies Analysis Using Log-Linear Modeling
conicfit
Algorithms for Fitting Circles, Ellipses and Conics Based on the Work by Prof. Nikolai Chernov
conics
Plot Conics
Conigrave
Flexible Tools for Multiple Imputation
conjoint
Conjoint analysis package
ConjointChecks
A package to check the cancellation axioms of conjoint measurement.
connect3
A Tool for Reproducible Research by Converting 'LaTeX' Files Generated by R Sweave to Rich Text Format Files
ConnMatTools
Tools for Working with Connectivity Data
conover.test
Conover-Iman Test of Multiple Comparisons Using Rank Sums
ConR
Computation of Parameters Used in Preliminary Assessment of Conservation Status
ConSpline
Partial Linear Least-Squares Regression using Constrained Splines
ConsRank
Compute the Median Ranking(s) According to the Kemeny's Axiomatic Approach
constrainedKriging
Constrained, Covariance-Matching Constrained and Universal Point or Block Kriging
ContaminatedMixt
Model-Based Clustering and Classification with the Multivariate Contaminated Normal Distribution
contfrac
Continued Fractions
conting
Bayesian Analysis of Contingency Tables
contoureR
Contouring of Non-Regular Three-Dimensional Data
contrast
A Collection of Contrast Methods
controlTest
Median Comparison for Two-Sample Right-Censored Survival Data
ConvCalendar
Converts dates between calendars
ConvergenceConcepts
Seeing convergence concepts in action
convertGraph
Convert Graphical Files Format
convertr
Convert Between Units
convevol
Quantifies and assesses the significance of convergent evolution
convey
Income Concentration Analysis with Complex Survey Samples
convoSPAT
Convolution-Based Nonstationary Spatial Modeling
cooccur
Probabilistic Species Co-Occurrence Analysis in R
cooccurNet
Co-Occurrence Network
coop
Co-Operation: Fast Covariance, Correlation, and Cosine Similarity Operations
cooptrees
Cooperative aspects of optimal trees in weighted graphs
copBasic
General Bivariate Copula Theory and Many Utility Functions
copCAR
Fitting the copCAR Regression Model for Discrete Areal Data
cope
Coverage Probability Excursion (CoPE) Sets
copula
Multivariate Dependence with Copulas
CopulaDTA
Copula Based Bivariate Beta-Binomial Model for Diagnostic Test Accuracy Studies
copulaedas
Estimation of Distribution Algorithms Based on Copulas
Copula.Markov
Estimation and Statistical Process Control Under Copula-Based Time Series Models
CopulaRegression
Bivariate Copula Based Regression Models
CopulaREMADA
Copula Mixed Effect Models for Bivariate and Trivariate Meta-Analysis of Diagnostic Test Accuracy Studies
CopyDetect
Computing Statistical Indices to Detect Answer Copying on Multiple-Choice Tests
CopyNumber450kCancer
Baseline Correction for Copy Number Data from Cancer Samples
coRanking
Co-Ranking Matrix
Corbi
Collection of Rudimentary Bioinformatics Tools
corclass
Correlational Class Analysis
corcounts
Generate correlated count random variables
cord
Community Estimation in G-Models via CORD
CORE
Cores of Recurrent Events
corehunter
Multi-Purpose Core Subset Selection
CORElearn
Classification, Regression and Feature Evaluation
coreNLP
Wrappers Around Stanford CoreNLP Tools
coreSim
Core Functionality for Simulating Quantities of Interest from Generalised Linear Models
coreTDT
TDT for compound heterozygous and recessive models
corHMM
Analysis of Binary Character Evolution
corkscrew
Preprocessor for Data Modeling
corlink
Record Linkage, Incorporating Imputation for Missing Agreement Patterns, and Modeling Correlation Patterns Between Fields
CORM
The Clustering of Regression Models Method
corpcor
Efficient Estimation of Covariance and (Partial) Correlation
corpora
Statistics and data sets for corpus frequency data
corr2D
Implementation of 2D Correlation Analysis in R
CorrBin
Nonparametrics with Clustered Binary and Multinomial Data
correctedAUC
Correcting AUC for Measurement Error
CorrectOverloadedPeaks
Correct Overloaded Peaks from GC-APCI-MS Data
CorReg
Linear Regression Based on Linear Structure Between Covariates
corregp
Functions and Methods for Correspondence Regression
Correlplot
A collection of functions for graphing correlation matrices
corrgram
Plot a Correlogram
CorrMixed
Estimate Correlations Between Repeatedly Measured Endpoints (E.g., Reliability) Based on Linear Mixed-Effects Models
corrplot
Visualization of a Correlation Matrix
corrr
Correlations in R
corrsieve
CorrSieve
CorrToolBox
Modeling Correlational Magnitude Transformations in Discretization Contexts
corTools
Tools for processing data after a Genome Wide Association Study
COSINE
COndition SpecIfic sub-NEtwork
cosinor
Tools for estimating and predicting the cosinor model
cosmoFns
Functions for cosmological distances, times, luminosities, etc.
CosmoPhotoz
Photometric redshift estimation using generalized linear models
cosmosR
cosmosR
cosso
Fit Regularized Nonparametric Regression Models Using COSSO Penalty.
costat
Time series costationarity determination
CosW
The CosW Distribution
cotrend
Consistant Cotrend Rank Selection
couchDB
Connect to and Work with CouchDB Databases
COUNT
Functions, Data and Code for Count Data
Counterfactual
Estimation and Inference Methods for Counterfactual Analysis
Countr
Flexible Univariate Count Models Based on Renewal Processes
countrycode
Convert Country Names and Country Codes
CountsEPPM
Mean and Variance Modeling of Count Data
countytimezones
Convert from UTC to Local Time for United States Counties
countyweather
Compiles Meterological Data for U.S. Counties
COUSCOus
A Residue-Residue Contact Detecting Method
covafillr
Local Polynomial Regression of State Dependent Covariates in State-Space Models
covBM
Brownian Motion Processes for 'nlme'-Models
covLCA
Latent Class Models with Covariate Effects on Underlying and Measured Variables
covmat
Covariance Matrix Estimation
covr
Test Coverage for Packages
covreg
A simultaneous regression model for the mean and covariance
covRobust
Robust Covariance Estimation via Nearest Neighbor Cleaning
CovSel
Model-Free Covariate Selection
CovSelHigh
Model-Free Covariate Selection in High Dimensions
covsep
Tests for Determining if the Covariance Structure of 2-Dimensional Data is Separable
covTest
Computes covariance test for adaptive linear modelling
cowplot
Streamlined Plot Theme and Plot Annotations for 'ggplot2'
cowsay
Messages, Warnings, Strings with Ascii Animals
CoxBoost
Cox models by likelihood based boosting for a single survival endpoint or competing risks
coxinterval
Cox-Type Models for Interval-Censored Data
coxme
Mixed Effects Cox Models
Coxnet
Regularized Cox Model
coxphf
Cox regression with Firth's penalized likelihood
coxphw
Weighted Estimation in Cox Regression
CoxPlus
Cox Regression (Proportional Hazards Model) with Multiple Causes and Mixed Effects
CoxRidge
Cox Models with Dynamic Ridge Penalties
coxrobust
Robust Estimation in Cox Model
coxsei
Fitting a CoxSEI Model
CP
Conditional Power Calculations
cp4p
Calibration Plot for Proteomics
cpa
Confirmatory Path Analysis through the d-sep tests
cpca
Methods to perform Common Principal Component Analysis (CPCA)
CPE
Concordance Probability Estimates in Survival Analysis
CpGassoc
Association Between Methylation and a Phenotype of Interest
cpgen
Parallelized Genomic Prediction and GWAS
CpGFilter
CpG Filtering Method Based on Intra-class Correlation Coefficients
CPHshape
Find the maximum likelihood estimator of the shape constrained hazard baseline and the effect parameters in the Cox proportional hazards model
cpk
Clinical Pharmacokinetics
cplexAPI
R Interface to C API of IBM ILOG CPLEX
cplm
Compound Poisson Linear Models
cpm
Sequential and Batch Change Detection Using Parametric and Nonparametric Methods
CPMCGLM
Correction of the pvalue after multiple coding
Cprob
Conditional probability function of a competing event
cqrReg
Quantile, Composite Quantile Regression and Regularized Versions
cquad
Conditional Maximum Likelihood for Quadratic Exponential Models for Binary Panel Data
CR
Power Calculation for Weighted Log-Rank Tests in Cure Rate Models
CRAC
Cosmology R Analysis Code
crackR
Probabilistic damage tolerance analysis for fatigue cracking of metallic aerospace structures
cramer
Multivariate nonparametric Cramer-Test for the two-sample-problem
crandatapkgs
Find Data-Only Packages on CRAN
crank
Completing Ranks
cranlogs
Download Logs from the 'RStudio' 'CRAN' Mirror
crantastic
Various R tools for http://crantastic.org/
crawl
Fit Continuous-Time Correlated Random Walk Models to Animal Movement Data
crayon
Colored Terminal Output
crblocks
Categorical Randomized Block Data Analysis
crch
Censored Regression with Conditional Heteroscedasticity
CreditMetrics
Functions for calculating the CreditMetrics risk model
creditr
Credit Default Swaps in R
credule
Credit Default Swap Functions
CRF
Conditional Random Fields
cricketr
Analyze Cricketers Based on ESPN Cricinfo Statsguru
crimCV
Group-Based Modelling of Longitudinal Data
crimelinkage
Statistical Methods for Crime Series Linkage
CRM
Continual Reassessment Method (CRM) for Phase I Clinical Trials
crmn
CCMN and other noRMalizatioN methods for metabolomics data
crmPack
Object-Oriented Implementation of CRM Designs
crn
Downloads and Builds datasets for Climate Reference Network
crop
Graphics Cropping Tool
CrossClustering
A Partial Clustering Algorithm with Automatic Estimation of the Number of Clusters and Identification of Outliers
crossdes
Construction of Crossover Designs
crossmatch
The Cross-match Test
Crossover
Analysis and Search of Crossover Designs
crossReg
Confidence intervals for crossover points of two simple regression lines
CrossVA
Verbal Autopsy Data Transform for Use with Various Coding Algorithms
crossval
Generic Functions for Cross Validation
crp.CSFP
CreditRisk+ Portfolio Model
crqa
Cross-Recurrence Quantification Analysis for Categorical and Continuous Time-Series
crrp
Penalized Variable Selection in Competing Risks Regression
crrSC
Competing risks regression for Stratified and Clustered data
crrstep
Stepwise Covariate Selection for the Fine & Gray Competing Risks Regression Model
crs
Categorical Regression Splines
crskdiag
Diagnostics for Fine and Gray Model
crsnls
Nonlinear Regression Parameters Estimation by 'CRS4HC' and 'CRS4HCe'
crtests
Classification and Regression Tests
CRTgeeDR
Doubly Robust Inverse Probability Weighted Augmented GEE Estimator
CRTSize
Sample Size Estimation Functions for Cluster Randomized Trials
crul
HTTP Client
crunch
Crunch.io Data Tools
cruts
Interface to Climatic Research Unit Time-Series Version 3.21 Data
CrypticIBDcheck
Identifying cryptic relatedness in genetic association studies
CryptRndTest
Statistical Tests for Cryptographic Randomness
cryst
Calculate the Relative Crystallinity of Starch by XRD and FTIR
csampling
Functions for Conditional Simulation in Regression-Scale Models
CSclone
Bayesian Nonparametric Modeling in R
cSFM
Covariate-adjusted Skewed Functional Model (cSFM)
cshapes
The CShapes Dataset and Utilities
cslogistic
Conditionally Specified Logistic Regression
csn
Closed Skew-Normal Distribution
csp
Correlates of State Policy Data Set in R
csrplus
Methods to Test Hypotheses on the Distribution of Spatial Point Processes
csSAM
csSAM - cell-specific Significance Analysis of Microarrays
cssTools
Cognitive Social Structure Tools
cstab
Selection of Number of Clusters via Normalized Clustering Instability
cstar
Substantive significance testing for regression estimates and marginal effects.
csvread
Fast Specialized CSV File Loader
csvy
Import and Export CSV Data with a YAML Metadata Header
cthreshER
Continuous Threshold Expectile Regression
ctl
Correlated Trait Locus (CTL) Mapping in R
CTM
A Text Mining Toolkit for Chinese Document
ctmcd
Estimating the Parameters of a Continuous-Time Markov Chain from Discrete-Time Data
ctmcmove
Modeling Animal Movement with Continuous-Time Discrete-Space Markov Chains
ctmm
Continuous-Time Movement Modeling
ctqr
Censored and Truncated Quantile Regression
cts
Continuous Time Autoregressive Models
ctsem
Continuous Time Structural Equation Modelling
CTT
Classical Test Theory Functions
CTTShiny
Classical Test Theory via Shiny
ctv
CRAN Task Views
CUB
A Class of Mixture Models for Ordinal Data
cubature
Adaptive multivariate integration over hypercubes
cubfits
Codon Usage Bias Fits
Cubist
Rule- and Instance-Based Regression Modeling
cudaBayesreg
CUDA Parallel Implementation of a Bayesian Multilevel Model for fMRI Data Analysis
cudaBayesregData
Data sets for the examples used in the package "cudaBayesreg"
cudia
CUDIA Cross-level Imputation
CUFF
Charles's Utility Function using Formula
CUMP
Analyze Multivariate Phenotypes by Combining Univariate Results
cumplyr
Extends ddply to allow calculation of cumulative quantities.
cumSeg
Change point detection in genomic sequences
curl
A Modern and Flexible Web Client for R
curlconverter
Tools to Transform 'cURL' Command-Line Calls to 'httr' Requests
currentSurvival
Estimation of CCI and CLFS Functions
curry
Partial Function Application with %<%, %-<%, and %><%
curvetest
The package will formally test two curves represented by discrete data sets to be statistically equal or not when the errors of the two curves were assumed either equal or not using the tube formula to calculate the tail probabilities.
curvHDR
Filtering of Flow Cytometry Samples
cusp
Cusp-Catastrophe Model Fitting Using Maximum Likelihood
customizedTraining
Customized Training for Lasso and Elastic-Net Regularized Generalized Linear Models
CUSUMdesign
Compute Decision Interval and Average Run Length for CUSUM Charts
cutoffR
CUTOFF: A Spatio-temporal Imputation Method
cuttlefish.model
An R package to perform LPUE standardization and stock assessment of the English Channel cuttlefish stock using a two-stage biomass model
cvAUC
Cross-Validated Area Under the ROC Curve Confidence Intervals
CVcalibration
Estimation of the Calibration Equation with Error-in Observations
CVD
Color Vision Deficiencies
cvplogistic
Penalized Logistic Regression Model using Majorization Minimization by Coordinate Descent (MMCD) Algorithm
cvq2
Calculate the predictive squared correlation coefficient
CVST
Fast Cross-Validation via Sequential Testing
CVThresh
Level-Dependent Cross-Validation Thresholding
cvTools
Cross-validation tools for regression models
CVTuningCov
Regularized Estimators of Covariance Matrices with CV Tuning
cvxbiclustr
Convex Biclustering Algorithm
cvxclustr
Splitting methods for convex clustering
cwhmisc
Miscellaneous Functions for Math, Plotting, Printing, Statistics, Strings, and Tools
cwm
Cluster Weighted Models by EM algorithm
cxxfunplus
extend cxxfunction by saving the dynamic shared objects
cycleRtools
Tools for Cycling Data Analysis
cyclocomp
Cyclomatic Complexity of R Code
cycloids
cycloids
Cyclops
Cyclic Coordinate Descent for Logistic, Poisson and Survival Analysis
cymruservices
Query 'Team Cymru' 'IP' Address, Autonomous System Number ('ASN'), Border Gateway Protocol ('BGP'), Bogon and 'Malware' Hash Data Services
cyphid
Cycle and Phase Identification for mastication data
cystiSim
Agent-Based Model for Taenia_solium Transmission and Control
cytoDiv
Cytometric diversity indices
D2C
Predicting Causal Direction from Dependency Features
d3heatmap
Interactive Heat Maps Using 'htmlwidgets' and 'D3.js'
D3M
Two Sample Test with Wasserstein Metric
d3Network
Tools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from R
D3partitionR
Plotting D3 Hierarchical Plots in R and Shiny
d3r
'd3.js' Utilities for R
DAAG
Data Analysis and Graphics Data and Functions
DAAGbio
Data Sets and Functions, for Demonstrations with Expression Arrays and Gene Sequences
DAAGxtras
Data Sets and Functions, supplementary to DAAG
dad
Three-Way Data Analysis Through Densities
dae
Functions Useful in the Design and ANOVA of Experiments
daewr
Design and Analysis of Experiments with R
daff
Diff, Patch and Merge for Data.frames
dafs
Data analysis for forensic scientists
dagbag
Learning directed acyclic graphs (DAGs) through bootstrap aggregating
DAGGER
Consensus genetic maps
dagitty
Graphical Analysis of Structural Causal Models
dagR
R functions for directed acyclic graphs
Daim
Diagnostic accuracy of classification models.
DAISIE
Dynamical Assembly of Islands by Speciation, Immigration and Extinction
DAKS
Data Analysis and Knowledge Spaces
DALY
The DALY Calculator - Graphical User Interface for Probabilistic DALY Calculation in R
dam
Data Analysis Metabolomics
DamiaNN
Neural Network Numerai
DAMisc
Dave Armstrong's Miscellaneous Functions
DAMOCLES
Dynamic Assembly Model of Colonization, Local Extinction and Speciation
dams
Dams in the United States from the National Inventory of Dams (NID)
DandEFA
Dandelion Plot for R-Mode Exploratory Factor Analysis
darch
Package for Deep Architectures and Restricted Boltzmann Machines
Dark
The Analysis of Dark Adaptation Data
darksky
Tools to Work with the Dark Sky API
darts
Statistical Tools to Analyze Your Darts Game
dashboard
Interactive Data Visualization with D3.js
DatABEL
File-Based Access to Large Matrices Stored on HDD in Binary Format
datacheck
Tools for Checking Data Consistency
datacheckr
Data Checking
DataClean
Data Cleaning
DataCombine
Tools for Easily Combining and Cleaning Data Sets
datadr
Divide and Recombine for Large, Complex Data
DataExplorer
Data Explorer
dataframes2xls
Write Data Frames to Xls Files
datafsm
Estimating Finite State Machine Models from Data
DataLoader
Import Multiple File Types
datamap
A system for mapping foreign objects to R variables and environments
datamart
Unified access to your data sources
dataonderivatives
Easily Source Publicly Available Data on Derivatives
dataone
R Interface to the DataONE REST API
datapack
A Flexible Container to Transport and Manipulate Data and Associated Resources
datapasta
RStudio Addins for Data Copy-Pasta
dataQualityR
Performs variable level data quality checks and generates summary statistics
dataRetrieval
Retrieval Functions for USGS and EPA Hydrologic and Water Quality Data
datarobot
DataRobot Predictive Modeling API
datastepr
An Implementation of a SAS-Style Data Step
data.table
Extension of `data.frame`
data.tree
General Purpose Hierarchical Data Structure
datautils
Support functions for packages VBmix, semisupKernelPCA, and patchPlot.
dataview
Data and Workspace Browser for Terminals
date
Functions for handling dates
DATforDCEMRI
Deconvolution Analysis Tool for Dynamic Contrast Enhanced MRI
dave
Functions for "Data Analysis in Vegetation Ecology"
Davies
The Davies Quantile Function
dawai
Discriminant Analysis with Additional Information
dbarts
Discrete Bayesian Additive Regression Trees Sampler
dbConnect
Provides a graphical user interface to connect with databases that use MySQL.
dbEmpLikeGOF
Goodness-of-fit and two sample comparison tests using sample entropy
dbEmpLikeNorm
Test for joint assessment of normality
DBEST
Detecting Breakpoints and Estimating Segments in Trend
dbfaker
A Tool to Ensure the Validity of Database Writes
DBGSA
methods of distance-based gene set functional enrichment analysis.
dbhydroR
'DBHYDRO' Hydrologic and Water Quality Data
DBI
R Database Interface
DBItest
Testing 'DBI' Back Ends
DBKGrad
Discrete Beta Kernel Graduation of Mortality Data
dblcens
Compute the NPMLE of distribution from doubly censored data
dbmss
Distance-Based Measures of Spatial Structures
dbscan
Density Based Clustering of Applications with Noise (DBSCAN) and Related Algorithms
dbstats
Distance-Based Statistics
DCchoice
Analyzing Dichotomous Choice Contingent Valuation Data
dcemriS4
A Package for Image Analysis of DCE-MRI (S4 Implementation)
DCG
Data Cloud Geometry (DCG): Using Random Walks to Find Community Structure in Social Network Analysis
DCGL
Differential Co-expression Analysis and Differential Regulation Analysis of Gene Expression Microarray Data
dcGOR
Analysis of Ontologies and Protein Domain Annotations
dChipIO
Methods for Reading dChip Files
DCL
Claims Reserving under the Double Chain Ladder Model
dclone
Data Cloning and MCMC Tools for Maximum Likelihood Methods
DCluster
Functions for the Detection of Spatial Clusters of Diseases
DCM
Data Converter Module
dcmle
Hierarchical Models Made Easy with Data Cloning
dcmr
Attribute profile estimation using Diagnostic Classification Models and MCMC
DCODE
List Linear n-Peptide Constraints for Overlapping Protein Regions
dCovTS
Distance Covariance and Correlation for Time Series Analysis
dcv
Conventional Cross-validation statistics for climate-growth model
ddalpha
Depth-Based Classification and Calculation of Data Depth
DDD
Diversity-Dependent Diversification
ddeploy
Wrapper for the Duke Deploy REST API
DDHFm
Variance Stabilization by Data-Driven Haar-Fisz (for Microarrays)
DDIwR
DDI with R
ddpcr
Analysis and Visualization of Droplet Digital PCR in R and on the Web
ddR
Distributed Data Structures in R
DDRTree
Learning Principal Graphs with DDRTree
ddst
Data Driven Smooth Tests
deadband
Statistical Deadband Algorithms Comparison
deal
Learning Bayesian Networks with Mixed Variables
deamer
Deconvolution density estimation with adaptive methods for a variable prone to measurement error
deBInfer
Bayesian Inference for Differential Equations
debug
MVB's debugger for R
debugme
Debug R Packages
DECIDE
DEComposition of Indirect and Direct Effects
decision
Statistical Decision Analysis
DecisionCurve
Calculate and Plot Decision Curves
decisionSupport
Quantitative Support of Decision Making under Uncertainty
decode
Differential Co-Expression and Differential Expression Analysis
decoder
Decode Coded Variables to Plain Text (and Vice Versa)
decompr
Global-Value-Chain Decomposition
decon
Deconvolution Estimation in Measurement Error Models
deconstructSigs
Identifies Signatures Present in a Tumor Sample
deconvolveR
Empirical Bayes Estimation Strategies
Deducer
A Data Analysis GUI for R
DeducerExtras
Additional dialogs and functions for Deducer
DeducerPlugInExample
Deducer Plug-in Example
DeducerPlugInScaling
Reliability and factor analysis plugin
DeducerSpatial
Deducer for spatial data analysis
DeducerSurvival
Add Survival Dialogue to Deducer
DeducerText
Deducer GUI for Text Data
deducorrect
Deductive Correction, Deductive Imputation, and Deterministic Correction
deductive
Data Correction and Imputation Using Deductive Methods
deepboost
Deep Boosting Ensemble Modeling
deeplearning
An Implementation of Deep Neural Network for Regression and Classification
deepnet
deep learning toolkit in R
DEEPR
Dirichlet-multinomial Evolutionary Event Profile Randomization (DEEPR) test
deformula
Integration of One-Dimensional Functions with Double Exponential Formulas
degenes
Detection of differentially expressed genes.
degreenet
Models for Skewed Count Distributions Relevant to Networks
Delaporte
Statistical Functions for the Delaporte Distribution
deldir
Delaunay Triangulation and Dirichlet (Voronoi) Tessellation
DeLorean
Estimates Pseudotimes for Single Cell Expression Data
delt
Estimation of Multivariate Densities Using Adaptive Partitions
deltaPlotR
Identification of dichotomous differential item functioning (DIF) using Angoff's Delta Plot method
Demerelate
Functions to Calculate Relatedness on Diploid Genetic Data
DEMEtics
Evaluating the genetic differentiation between populations based on Gst and D values.
demi
Differential Expression from Multiple Indicators
deming
Deming, Thiel-Sen and Passing-Bablock Regression
demography
Forecasting mortality, fertility, migration and population data
demoKde
Kernel Density Estimation for Demonstration Purposes
DEMOVA
DEvelopment (of Multi-Linear QSPR/QSAR) MOdels VAlidated using Test Set
dendextend
Extending R's Dendrogram Functionality
dendextendRcpp
Faster Dendrogram Manipulation using 'Rcpp'
dendroextras
Extra functions to cut, label and colour dendrogram clusters
dendrometeR
Analyzing Dendrometer Data
DendSer
Dendrogram seriation: ordering for visualisation
dendsort
Modular Leaf Ordering Methods for Dendrogram Nodes
DengueRT
Parameter Estimates and Real-Time Prediction of a Single Dengue Outbreak
denoiseR
Regularized Low Rank Matrix Estimation
denovolyzeR
Statistical Analyses of De Novo Genetic Variants
denpro
Visualization of Multivariate Functions, Sets, and Data
densityClust
Clustering by Fast Search and Find of Density Peaks
Density.T.HoldOut
Density.T.HoldOut: Non-combinatorial T-estimation Hold-Out for density estimation
DensParcorr
Dens-Based Method for Partial Correlation Estimation in Large Scale Brain Networks
densratio
Density Ratio Estimation
denstrip
Density strips and other methods for compactly illustrating distributions
DEoptim
Global Optimization by Differential Evolution
DEoptimR
Differential Evolution Optimization in Pure R
depend.truncation
Statistical Inference for Parametric and Semiparametric Models Based on Dependently Truncated Data
DEploid
Deconvolute Mixed Genomes with Unknown Proportions
depmix
Dependent Mixture Models
depmixS4
Dependent Mixture Models - Hidden Markov Models of GLMs and Other Distributions in S4
depth
Depth functions tools for multivariate analysis
depth.plot
Multivariate Analogy of Quantiles
DepthProc
Statistical Depth Functions for Multivariate Analysis
depthTools
Depth Tools Package
dequer
Stacks, Queues, and 'Deques' for R
Deriv
Symbolic Differentiation
derivmkts
Functions and R Code to Accompany Derivatives Markets
desc
Manipulate DESCRIPTION Files
descomponer
Seasonal Adjustment by Frequency Analysis
descr
Descriptive Statistics
DescribeDisplay
An Interface to the DescribeDisplay GGobi Plugin
describer
Describe Data in R Using Common Descriptive Statistics
DescTools
Tools for Descriptive Statistics
deseasonalize
Optimal deseasonalization for geophysical time series using AR fitting
designGG
Computational tool for designing genetical genomics experiments.
designGLMM
Finding Optimal Block Designs for a Generalised Linear Mixed Model
designmatch
Construction of Optimally Matched Samples for Randomized Experiments and Observational Studies that are Balanced and Representative by Design
desiR
Desirability Functions for Ranking, Selecting, and Integrating Data
desirability
Function Optimization and Ranking via Desirability Functions
desire
Desirability functions in R
DESnowball
Bagging with Distance-based Regression for Differential Gene Expression Analyses
deSolve
Solvers for Initial Value Problems of Differential Equations (ODE, DAE, DDE)
DESP
Estimation of Diagonal Elements of Sparse Precision-Matrices
desplot
Plotting Field Plans for Agricultural Experiments
detect
Analyzing Wildlife Data with Detection Error
detector
Detect Data Containing Personally Identifiable Information
deTestSet
Testset for differential equations
DetMCD
Implementation of the DetMCD Algorithm (Robust and Deterministic Estimation of Location and Scatter)
DetR
Suite of Deterministic and Robust Algorithms for Linear Regression
detrendeR
Start the detrendeR Graphical User Interface (GUI)
DetSel
A computer program to detect markers responding to selection
detzrcr
Compare Detrital Zircon Suites
devEMF
EMF Graphics Output Device
Devore7
Data sets from Devore's "Prob and Stat for Eng (7th ed)"
devRate
Quantify Relationship Between Developmental Rate and Temperature in Ectotherms
devtools
Tools to Make Developing R Packages Easier
df2json
Convert a dataframe to JSON
dfcomb
Phase I/II Adaptive Dose-Finding Design for Combination Studies
dfcrm
Dose-finding by the continual reassessment method
dfexplore
Explore data.frames by plotting NA and classes of each variable
DFIT
Differential Functioning of Items and Tests
dfmta
Phase I/II Adaptive Dose-Finding Design for MTA
dfoptim
Derivative-Free Optimization
dfphase1
Phase I Control Charts (with Emphasis on Distribution-Free Methods)
dfpk
A Bayesian Dose-Finding Design using Pharmacokinetics(PK) for Phase I Clinical Trials
dga
Capture-Recapture Estimation using Bayesian Model Averaging
dGAselID
Genetic Algorithm with Incomplete Dominance for Feature Selection
DGCA
Differential Gene Correlation Analysis
dggridR
Discrete Global Grids for R
dglars
Differential Geometric LARS (dgLARS) method
dglm
Double Generalized Linear Models
dgmb
Simulating Data for PLS Mode B Structural Models
dgof
Discrete Goodness-of-Fit Tests
DHARMa
Residual Diagnostics for Hierarchical (Multi-Level / Mixed) Regression Models
dhga
Differential Hub Gene Analysis
dhglm
Double Hierarchical Generalized Linear Models
dHSIC
Independence Testing via Hilbert Schmidt Independence Criterion
diagis
Diagnostic Plot and Multivariate Summary Statistics of Weighted Samples from Importance Sampling
diagonals
Block Diagonal Extraction or Replacement
diagram
Functions for visualising simple graphs (networks), plotting flow diagrams
DiagrammeR
Create Graph Diagrams and Flowcharts Using R
DiagrammeRsvg
Export DiagrammeR Graphviz Graphs as SVG
DiagTest3Grp
Diagnostic test summary measures for three ordinal groups
DiallelAnalysisR
Diallel Analysis with R
diaplt
Beads Summary Plot of Ranges
dice
Calculate probabilities of various dice-rolling events
DiceDesign
Designs of Computer Experiments
DiceEval
Construction and Evaluation of Metamodels
DiceKriging
Kriging Methods for Computer Experiments
DiceOptim
Kriging-Based Optimization for Computer Experiments
DiceView
Plot methods for computer experiments design and surrogate.
dichromat
Color Schemes for Dichromats
dicionariosIBGE
Dictionaries for reading microdata surveys from IBGE
DidacticBoost
A Simple Implementation and Demonstration of Gradient Boosting
dielectric
Defines some physical constants and dielectric functions commonly used in optics, plasmonics.
diezeit
R Interface to the ZEIT ONLINE Content API
DIFboost
Detection of Differential Item Functioning (DIF) in Rasch Models by Boosting Techniques
Difdtl
Difference of Two Precision Matrices Estimation
DiffCorr
Analyzing and Visualizing Differential Correlation Networks in Biological Data
diffdepprop
Calculates Confidence Intervals for two Dependent Proportions
diffEq
Functions from the book Solving Differential Equations in R
diffeR
Metrics of Difference for Comparing Pairs of Maps
diffIRT
Diffusion IRT Models for Response and Response Time Data
diffobj
Diffs for R Objects
diffr
Display Differences Between Two Files using Codediff Library
diffractometry
Baseline identification and peak decomposition for x-ray diffractograms
diffrprojects
Projects for Text Version Comparison and Analytics in R
diffrprojectswidget
Visualization for 'diffrprojects'
diffusionMap
Diffusion map
DiffusionRgqd
Inference and Analysis for Generalized Quadratic Diffusions
DiffusionRimp
Inference and Analysis for Diffusion Processes via Data Imputation and Method of Lines
DiffusionRjgqd
Inference and Analysis for Jump Generalized Quadratic Diffusions
diffusr
Network Diffusion Algorithms
DIFlasso
A Penalty Approach to Differential Item Functioning in Rasch Models
difNLR
Detection of Dichotomous Differential Item Functioning (DIF) by Non- Linear Regression Function
difR
Collection of Methods to Detect Dichotomous Differential Item Functioning (DIF)
DIFtree
Item Focused Trees for the Identification of Items in Differential Item Functioning
digest
Create Compact Hash Digests of R Objects
Digiroo2
An application programming interface for generating null models of social contacts based on individuals' space use
digitalPCR
Estimate Copy Number for Digital PCR
digitize
Use Data from Published Plots in R
dils
Data-Informed Link Strength. Combine multiple-relationship networks into a single weighted network. Impute (fill-in) missing network links.
DIME
DIME (Differential Identification using Mixture Ensemble)
dina
Bayesian Estimation of DINA Model
dinamic
DiNAMIC A Method To Analyze Recurrent DNA Copy Number Aberrations in Tumors
diptest
Hartigan's Dip Test Statistic for Unimodality - Corrected
DIRECT
Bayesian Clustering of Multivariate Data Under the Dirichlet-Process Prior
Directional
Directional Statistics
directlabels
Direct Labels for Multicolor Plots
directPA
Direction Analysis for Pathways and Kinases
DirectStandardisation
Adjusted Means and Proportions by Direct Standardisation
DirichletReg
Dirichlet Regression in R
dirmult
Estimation in Dirichlet-Multinomial distribution.
Disake
Discrete associated kernel estimators
discgolf
Discourse 'API' Client
disclap
Discrete Laplace Exponential Family
disclapmix
Discrete Laplace Mixture Inference using the EM Algorithm
DiscML
DiscML: An R package for estimating evolutionary rates of discrete characters using maximum likelihood
discretecdAlgorithm
Coordinate-Descent Algorithm for Discrete Data
DiscreteInverseWeibull
Discrete Inverse Weibull Distribution
DiscreteLaplace
Discrete Laplace Distributions
discreteMTP
Multiple testing procedures for discrete test statistics
discreteRV
Create and Manipulate Discrete Random Variables
DiscreteWeibull
Discrete Weibull Distributions (Type 1 and 3)
discretization
Data preprocessing, discretization for classification.
discrimARTs
Discrimination of Alternative Reproductive Tactics (ARTs).
DiscriMiner
Tools of the Trade for Discriminant Analysis
discSurv
Discrete Time Survival Analysis
diseasemapping
Modelling Spatial Variation in Disease Risk for Areal Data
DisimForMixed
Calculate Dissimilarity Matrix for Dataset with Mixed Attributes
diskImageR
A Pipeline to Analyze Resistance and Tolerance from Drug Disk Diffusion Assays
dismo
Species Distribution Modeling
disp2D
2D Hausdorff and Simplex Dispersion Orderings
disparityfilter
Disparity Filter Algorithm for Weighted Networks
displayHTS
displayHTS
dispmod
Dispersion models
disposables
Create Disposable R Packages for Testing
dissUtils
Utilities for making pairwise comparisons of multivariate data
Distance
Distance Sampling Detection Function and Abundance Estimation
distance.sample.size
Calculates Study Size Required for Distance Sampling
DistatisR
DiSTATIS Three Way Metric Multidimensional Scaling
distcomp
Computations over Distributed Data without Aggregation
distdrawr
Download Occurrence Data of Vascular Plants in Germany from the FLORKART Database
distfree.cr
Distribution-free confidence region (distfree.cr)
distillery
Method Functions for Confidence Intervals and to Distill Information from an Object
distory
Distance Between Phylogenetic Histories
distr
Object Oriented Implementation of Distributions
distrDoc
Documentation for 'distr' Family of R Packages
distrEllipse
S4 Classes for Elliptically Contoured Distributions
distrEx
Extensions of Package 'distr'
DistributionUtils
Distribution Utilities
distrMod
Object Oriented Implementation of Probability Models
distrom
Distributed Multinomial Regression
distrRmetrics
Distribution Classes for Distributions from Rmetrics
distrSim
Simulation Classes Based on Package 'distr'
distrTeach
Extensions of Package 'distr' for Teaching Stochastics/Statistics in Secondary School
distrTEst
Estimation and Testing Classes Based on Package 'distr'
divagis
Provides tools for quality checks of georeferenced plant species accessions.
DivE
Diversity Estimator
diveMove
Dive Analysis and Calibration
diverse
Diversity Measures for Complex Systems
diversitree
Comparative 'Phylogenetic' Analyses of Diversification
diveRsity
A Comprehensive, General Purpose Population Genetics Analysis Package
DiversityOccupancy
Building Diversity Models from Multiple Species Occupancy Models
DiversitySampler
Functions for re-sampling a community matrix to compute diversity indices at different sampling levels.
DivMelt
HRM Diversity Assay Analysis Tool
divo
Tools for Analysis of Diversity and Similarity in Biological Systems
dixon
Nearest Neighbour Contingency Table Analysis
DJL
Distance Measure Based Judgment and Learning
dkDNA
Diffusion Kernels on a Set of Genotypes
DLASSO
Implementation of Differentiable Lasso Penalty in Linear Models
dlm
Bayesian and Likelihood Analysis of Dynamic Linear Models
dlmap
Detection Localization Mapping for QTL
dlmodeler
Generalized Dynamic Linear Modeler
DLMtool
Data-Limited Methods Toolkit
dlnm
Distributed Lag Non-Linear Models
dlsem
Distributed-Lag Structural Equation Modelling
dlstats
Download Stats of R Packages
dma
Dynamic Model Averaging
dml
Distance Metric Learning in R
dmm
Dyadic Mixed Model for Pedigree Data
dMod
Dynamic Modeling and Parameter Estimation in ODE Models
DMR
Delete or Merge Regressors for linear model selection.
DMRMark
DMR Detection by Non-Homogeneous Hidden Markov Model from Methylation Array Data
dmt
Dependency Modeling Toolkit
DMwR
Functions and data for "Data Mining with R"
DMwR2
Functions and Data for the Second Edition of "Data Mining with R"
dna
Differential Network Analysis
DNAprofiles
DNA Profiling Evidence Analysis
DNAseqtest
Generating and Testing DNA Sequences
DNAtools
Tools for Analysing Forensic Genetic DNA Data
dnc
Dynamic Network Clustering
DnE
Distribution and Equation
dnet
Integrative Analysis of Omics Data in Terms of Network, Evolution and Ontology
DNMF
Discriminant Non-Negative Matrix Factorization
DOBAD
Analysis of Discretely Observed Linear Birth-and-Death(-and-Immigration) Markov Chains
doBy
Groupwise Statistics, LSmeans, Linear Contrasts, Utilities
docopt
Command-Line Interface Specification Language
docopulae
Optimal Designs for Copula Models
documair
Automatic Documentation for R packages
docxtractr
Extract Data Tables and Comments from Microsoft Word Documents
Dodge
Functions for Acceptance Sampling Ideas originated by H.F. Dodge
DODR
Detection of Differential Rhythmicity
DoE.base
Full Factorials, Orthogonal Arrays and Base Utilities for DoE Packages
DoE.wrapper
Wrapper package for design of experiments functionality
doFuture
Foreach Parallel Adaptor using the Future API of the 'future' Package
doMC
Foreach Parallel Adaptor for 'parallel'
Dominance
ADI (Average Dominance Index), Social Network Graphs with Dual Directions, and Music Notation Graph
domino
R Console Bindings for the 'Domino Command-Line Client'
doMPI
Foreach parallel adaptor for the Rmpi package
doParallel
Foreach Parallel Adaptor for the 'parallel' Package
doRedis
Foreach parallel adapter for the rredis package
doRNG
Generic Reproducible Parallel Backend for foreach Loops
DoseFinding
Planning and Analyzing Dose Finding Experiments
doSNOW
Foreach Parallel Adaptor for the 'snow' Package
dosresmeta
Performing Multivariate Dose-Response Meta-Analysis
dostats
Compute Statistics Helper Functions
DOT
Render and Export DOT Graphs in R
DoTC
Distribution of Typicality Coefficients
dotCall64
Enhanced Foreign Function Interface Supporting Long Vectors
dotenv
Load Environment Variables from '.env'
dotwhisker
Dot-and-Whisker Plots of Regression Results
DoubleCone
Test against parametric regression function
DoubleExpSeq
Differential Exon Usage Test for RNA-Seq Data via Empirical Bayes Shrinkage of the Dispersion Parameter
DOvalidation
Local Linear Hazard Estimation with Do-Validated and Cross-Validated Bandwidths
Dowd
Functions Ported from 'MMR2' Toolbox Offered in Kevin Dowd's Book Measuring Market Risk
downloader
Download Files over HTTP and HTTPS
downscale
Downscaling Species Occupancy
downsize
A Tool to Downsize Large Workflows for Testing
dpa
Dynamic Path Approach
DPBBM
Dirichlet Process Beta-Binomial Mixture
dpcR
Digital PCR Analysis
dpglasso
Primal Graphical Lasso
dplR
Dendrochronology Program Library in R
dplRCon
Concordance for Dendroclimatology
dplyr
A Grammar of Data Manipulation
dpmixsim
Dirichlet Process Mixture model simulation for clustering and image segmentation
dpmr
Data Package Manager for R
DPpackage
Bayesian nonparametric modeling in R
dprep
Data Pre-Processing and Visualization Functions for Classification
dr
Methods for Dimension Reduction for Regression
drat
Drat R Archive Template
drawExpression
Visualising R syntax through graphics
DRaWR
Discriminative Random Walk with Restart
DrBats
Data Representation: Bayesian Approach That's Sparse
drc
Analysis of Dose-Response Curves
DREGAR
Regularized Estimation of Dynamic Linear Regression in the Presence of Autocorrelated Residuals (DREGAR)
drfit
Dose-Response Data Evaluation
drgee
Doubly Robust Generalized Estimating Equations
DrillR
R Driver for Apache Drill
DRIP
Discontinuous Regression and Image Processing
drLumi
Multiplex Immunoassays Data Analysis
drm
Regression and association models for repeated categorical data
drmdel
Dual Empirical Likelihood Inference under Density Ratio Models in the Presence of Multiple Samples
dropR
Analyze Drop Out of an Experiment or Survey
DRR
Dimensionality Reduction via Regression
drsmooth
Dose-Response Modeling with Smoothing Splines
DrugClust
Implementation of a Machine Learning Framework for Predicting Drugs Side Effects
ds
Descriptive Statistics
dsample
Discretization-Based Direct Random Sample Generation
DSBayes
Bayesian subgroup analysis in clinical trials
dse
Dynamic Systems Estimation (Time Series Package)
DSL
Distributed Storage and List
dslice
Dynamic Slicing
dsm
Density Surface Modelling of Distance Sampling Data
dsmodels
A Language to Facilitate the Creation and Visualization of Two- Dimensional Dynamical Systems
DSpat
Spatial Modelling for Distance Sampling Data
DSsim
Distance Sampling Simulations
dst
Using Dempster-Shafer Theory
DstarM
Analyze Two Choice Reaction Time Data with the D*M Method
DStree
Recursive Partitioning for Discrete-Time Survival Trees
DSviaDRM
Exploring Disease Similarity in Terms of Dysfunctional Regulatory Mechanisms
DT
A Wrapper of the JavaScript Library 'DataTables'
dtables
Simplifying Descriptive Frequencies and Statistics
DTComPair
Comparison of Binary Diagnostic Tests in a Paired Study Design
DTDA
Doubly truncated data analysis
dti
Analysis of Diffusion Weighted Imaging (DWI) Data
DTK
Dunnett-Tukey-Kramer Pairwise Multiple Comparison Test Adjusted for Unequal Variances and Unequal Sample Sizes
DTMCPack
Suite of functions related to discrete-time discrete-state Markov Chains
dtplyr
Data Table Back-End for 'dplyr'
DTR
Estimation and Comparison of Dynamic Treatment Regimes
DTRlearn
Learning Algorithms for Dynamic Treatment Regimes
DTRreg
DTR Estimation and Inference via G-Estimation, Dynamic WOLS, and Q-Learning
dtt
Discrete Trigonometric Transforms
dtw
Dynamic Time Warping Algorithms
dtwclust
Time Series Clustering Along with Optimizations for the Dynamic Time Warping Distance
dtwSat
Time-Weighted Dynamic Time Warping for Satellite Image Time Series Analysis
dualScale
Dual Scaling Analysis of Multiple Choice Data
dummies
Create dummy/indicator variables flexibly and efficiently
dummy
Automatic Creation of Dummies with Support for Predictive Modeling
DunnettTests
Software implementation of step-down and step-up Dunnett test procedures
dunn.test
Dunn's Test of Multiple Comparisons Using Rank Sums
dupiR
Bayesian inference from count data using discrete uniform priors
dvfBm
Discrete variations of a fractional Brownian motion
DVHmetrics
Analyze Dose-Volume Histograms and Check Constraints
dvn
Access to Dataverse 3 APIs
DWreg
Parametric Regression for Discrete Response
dygraphs
Interface to 'Dygraphs' Interactive Time Series Charting Library
DYM
Did You Mean?
dyn
Time Series Regression
DynamicDistribution
Dynamically visualized probability distributions and their moments
dynamicGraph
dynamicGraph
dynamicTreeCut
Methods for Detection of Clusters in Hierarchical Clustering Dendrograms
dynatopmodel
Implementation of the Dynamic TOPMODEL Hydrological Model
dynaTree
Dynamic Trees for Learning and Design
dynBiplotGUI
Full Interactive GUI for Dynamic Biplot in R
DynClust
Denoising and clustering for dynamical image sequence (2D or 3D)+T
dynCorr
Dynamic Correlation Package
dynetNLAResistance
Resisting Neighbor Label Attack in a Dynamic Network
dynia
Fit Dynamic Intervention Model
dynlm
Dynamic Linear Regression
DynNom
Dynamic Nomograms for Linear, Generalized Linear and Proportional Hazard Models
dynOmics
Fast Fourier Transform to Identify Associations Between Time Course Omics Data
dynpanel
Dynamic Panel Data Models
dynpred
Companion Package to "Dynamic Prediction in Clinical Survival Analysis"
dynr
Dynamic Modeling in R
dynRB
Dynamic Range Boxes
dynsim
Dynamic Simulations of Autoregressive Relationships
dynsurv
Dynamic Models for Survival Data
DynTxRegime
Methods for Estimating Dynamic Treatment Regimes
DySeq
Functions for Dyadic Sequence Analyses
e1071
Misc Functions of the Department of Statistics, Probability Theory Group (Formerly: E1071), TU Wien
eaf
Plots of the Empirical Attainment Function
eAnalytics
Dynamic Web-Based Analytics for the Energy Industry
earlywarnings
Early Warning Signals Toolbox for Detecting Critical Transitions in Timeseries
earth
Multivariate Adaptive Regression Splines
earthtones
Derive a Color Palette from a Particular Location on Earth
EasyABC
Efficient Approximate Bayesian Computation Sampling Schemes
easyanova
Analysis of variance and other important complementary analyzes
easyformatr
Tools for Building R Formats
EasyHTMLReport
EasyHTMLReport
EasyMARK
Utility functions for working with mark-recapture data.
easynls
Easy nonlinear model
easypackages
Easy Loading and Installing of Packages
easypower
Sample Size Estimation for Experimental Designs
easyPubMed
Search and Retrieve Scientific Publication Records from Pubmed
easyreg
Easy Regression
EasyStrata
Evaluation of stratified genome-wide association meta-analysis results
easyVerification
Ensemble Forecast Verification for Large Data Sets
eba
Elimination-by-Aspects Models
ebal
Entropy reweighting to create balanced samples
EBASS
Sample Size Calculation Method for Cost-Effectiveness Studies Based on Expected Value of Perfect Information
EbayesThresh
Empirical Bayes Thresholding and Related Methods
ebdbNet
Empirical Bayes Estimation of Dynamic Bayesian Networks
EBEN
Empirical Bayesian Elastic Net
ebGenotyping
Genotyping and SNP Detection using Next Generation Sequencing Data
EBglmnet
Empirical Bayesian Lasso and Elastic Net Methods for Generalized Linear Models
ebimetagenomics
EBI Metagenomics Portal
EBMAforecast
Ensemble BMA Forecasting
EBS
Exact Bayesian Segmentation
ebSNP
Genotyping and SNP calling using single-sample next generation sequencing data
ecb
Programmatic Access to the European Central Bank's Statistical Data Warehouse (SDW)
ECctmc
Simulation from Endpoint-Conditioned Continuous Time Markov Chains
ecd
Elliptic Distribution and Lambda Option Pricing Model
Ecdat
Data Sets for Econometrics
ecdfHT
Empirical CDF for Heavy Tailed Data
ecespa
Functions for Spatial Point Pattern Analysis
Ecfun
Functions for Ecdat
ECharts2Shiny
Embedding Interactive Charts Generated with ECharts Library into Shiny Applications
ecipex
Efficient calculation of fine structure isotope patterns via Fourier transforms of simplex-based elemental models
ecm
Build Error Correction Models
eco
Ecological Inference in 2x2 Tables
ecodist
Dissimilarity-based functions for ecological analysis
ecoengine
Programmatic Interface to the API Serving UC Berkeley's Natural History Data
EcoGenetics
Spatial Analysis of Phenotypic, Genotypic and Environmental Data
EcoHydRology
A community modeling foundation for Eco-Hydrology.
ecolMod
"A practical guide to ecological modelling - using R as a simulation platform"
EconDemand
General Analysis of Various Economics Demand Systems
ecoreg
Ecological Regression using Aggregate and Individual Data
ecoretriever
R Interface to the EcoData Retriever
ecosim
Toolbox for Aquatic Ecosystem Modeling
EcoSimR
Null Model Analysis for Ecological Data
ECOSolveR
Embedded Conic Solver in R
ecospace
Simulating Community Assembly and Ecological Diversification Using Ecospace Frameworks
ecospat
Spatial Ecology Miscellaneous Methods
ecotoxicology
Methods for Ecotoxicology
EcoTroph
EcoTroph R package
ecoval
Procedures for Ecological Assessment of Surface Waters
EcoVirtual
Simulation of Ecological Models
ecp
Non-Parametric Multiple Change-Point Analysis of Multivariate Data
ecr
Evolutionary Computing in R
edarf
Exploratory Data Analysis using Random Forests
edcc
Economic Design of Control Charts
edci
Edge Detection and Clustering in Images
edeaR
Exploratory and Descriptive Event-Based Data Analysis
edeR
Email Data Extraction Using R
edesign
Maximum Entropy Sampling
edf
Read Data from European Data Format (EDF and EDF+) Files
EDFIR
Estimating Discrimination Factors
edfReader
Reading EDF(+) and BDF(+) Files
edfun
Creating Empirical Distribution Functions
edgar
Platform for EDGAR Filing Management
edgebundleR
Circle Plot with Bundled Edges
edgeCorr
Spatial Edge Correction
edgeRun
More Powerful Unconditional Testing of Negative Binomial Means for Digital Gene Expression Data
EDISON
Network Reconstruction and Changepoint Detection
EditImputeCont
Simultaneous Edit-Imputation for Continuous Microdata
editrules
Parsing, Applying, and Manipulating Data Cleaning Rules
eDMA
Dynamic Model Averaging with Grid Search
EDR
Estimation of the Effective Dimension Reduction ('EDR') Space
edrGraphicalTools
Provides tools for dimension reduction methods
edstan
Stan Models for Item Response Theory
eechidna
Exploring Election and Census Highly Informative Data Nationally for Australia
eegAnalysis
Tools for analysis and classification of electroencephalography (EEG) data.
eegkit
Toolkit for Electroencephalography Data
eegkitdata
Data for package eegkit
eel
Extended Empirical Likelihood
EEM
Read and Preprocess Fluorescence Excitation-Emission Matrix (EEM) Data
eemR
Tools for Pre-Processing Emission-Excitation-Matrix (EEM) Fluorescence Data
eeptools
Convenience Functions for Education Data
EFAutilities
Utility Functions for Exploratory Factor Analysis
EFDR
Wavelet-Based Enhanced FDR for Signal Detection in Noisy Images
effectFusion
Bayesian Effect Fusion for Categorical Predictors
EffectLiteR
Average and Conditional Effects
effects
Effect Displays for Linear, Generalized Linear, and Other Models
EffectsRelBaseline
Test changes of a grouped response relative to baseline.
EffectStars
Visualization of Categorical Response Models
EffectStars2
Effect Stars
EffectTreat
Prediction of Therapeutic Success
efflog
The Causal Effects for a Causal Loglinear Model
effsize
Efficient Effect Size Computation
efreadr
Read European Fluxes CSV Files
EFS
Tool for Ensemble Feature Selection
ega
Error Grid Analysis
egcm
Engle-Granger Cointegration Models
eggCounts
Hierarchical Modelling of Faecal Egg Counts
egonet
Tool for ego-centric measures in Social Network Analysis
EGRET
Exploration and Graphics for RivEr Trends (EGRET)
EGRETci
Exploration and Graphics for RivEr Trends (EGRET) Confidence Intervals
eha
Event History Analysis
eHOF
Extended HOF (Huisman-Olff-Fresco) Models
ei
Ecological Inference
EIAdata
R Wrapper for the Energy Information Administration (EIA) API
eiCompare
Compares EI, Goodman, RxC Estimates
eigeninv
Generates (dense) matrices that have a given set of eigenvalues
eigenmodel
Semiparametric factor and regression models for symmetric relational data
eigenprcomp
Computes confidence intervals for principal components
EILA
Efficient Inference of Local Ancestry
eiPack
eiPack: Ecological Inference and Higher-Dimension Data Management
eive
An algorithm for reducing errors-in-variable bias in simple linear regression
eiwild
Ecological Inference with individual and aggregate data
EL
Two-sample Empirical Likelihood
elasso
Enhanced Least Absolute Shrinkage and Selection Operator Regression Model
elastic
General Purpose Interface to 'Elasticsearch'
elasticIsing
Ising Network Estimation using Elastic Net and k-Fold Cross-Validation
elasticnet
Elastic-Net for Sparse Estimation and Sparse PCA
elasticsearchr
A Lightweight Interface for Interacting with Elasticsearch from R
elec
Collection of functions for statistical election audits
elec.strat
Functions for election audits using stratified random samples
electionsBR
R Functions to Download and Clean Brazilian Electoral Data
elementR
A Shiny Application for Reducing Elemental LA-ICPMS Data from Solid Structures
ElemStatLearn
Data Sets, Functions and Examples from the Book: "The Elements of Statistical Learning, Data Mining, Inference, and Prediction" by Trevor Hastie, Robert Tibshirani and Jerome Friedman
elexr
Load Associated Press Election Results with Elex
elhmc
Sampling from a Empirical Likelihood Bayesian Posterior of Parameters Using Hamiltonian Monte Carlo
elliplot
Ellipse Summary Plot of Quantiles
ellipse
Functions for drawing ellipses and ellipse-like confidence regions
elliptic
Elliptic Functions
elmNN
Implementation of ELM (Extreme Learning Machine ) algorithm for SLFN ( Single Hidden Layer Feedforward Neural Networks )
ELMR
Extreme Machine Learning (ELM)
EloChoice
Preference Rating for Visual Stimuli Based on Elo Ratings
EloRating
Animal Dominance Hierarchies by Elo Rating
elrm
Exact Logistic Regression via MCMC
ElstonStewart
Elston-Stewart Algorithm
ELT
Experience Life Tables
ELYP
Empirical Likelihood Analysis for the Cox Model and Yang-Prentice (2005) Model
EMA
Easy Microarray Data Analysis
EMbC
Expectation-Maximization Binary Clustering
embryogrowth
Tools to Analyze the Thermal Reaction Norm of Embryo Growth
EMC
Evolutionary Monte Carlo (EMC) algorithm
EMCluster
EM Algorithm for Model-Based Clustering of Finite Mixture Gaussian Distribution
EMD
Empirical Mode Decomposition and Hilbert Spectral Analysis
emdbook
Support Functions and Data for "Ecological Models and Data"
emdi
Estimating and Mapping Disaggregated Indicators
emdist
Earth Mover's Distance
emg
Exponentially Modified Gaussian (EMG) Distribution
emil
Evaluation of Modeling without Information Leakage
emIRT
EM Algorithms for Estimating Item Response Theory Models
EmiStatR
Estimation of Wastewater Emissions in Combined Sewer Systems
eMLEloglin
Fitting log-Linear Models in Sparse Contingency Tables
emma
Evolutionary model-based multiresponse approach
EMMAgeo
End-Member Modelling of Grain-Size Data
emme2
Read and Write to an EMME/2 databank
EMMIXcontrasts
Contrasts in mixed effects for EMMIX model with random effects.
EMMIXskew
The EM Algorithm and Skew Mixture Distribution
EMMIXuskew
Fitting Unrestricted Multivariate Skew t Mixture Models
EMMLi
A Maximum Likelihood Approach to the Analysis of Modularity
EMMREML
Fitting Mixed Models with Known Covariance Structures
emoa
Evolutionary Multiobjective Optimization Algorithms
emojifont
Emoji Fonts for using in R
emon
Tools for Environmental and Ecological Survey Design
emov
Eye Movement Analysis Package for Fixation and Saccade Detection
EMP
Expected Maximum Profit Classification Performance Measure
EmpiricalCalibration
Routines for Performing Empirical Calibration of Observational Study Estimates
empiricalFDR.DESeq2
Simulation-Based False Discovery Rate in RNA-Seq
emplik
Empirical Likelihood Ratio for Censored/Truncated Data
emplik2
Empirical Likelihood Ratio Test for Two Samples with Censored Data
EMSaov
The Analysis of Variance with EMS
EMSC
Extended Multiplicative Signal Correction
EMT
Exact Multinomial Test: Goodness-of-Fit Test for Discrete Multivariate data
emulator
Bayesian emulation of computer programs
emuR
Main Package of the EMU Speech Database Management System
EMVC
Entropy Minimization over Variable Clusters (EMVC)
enaR
Tools for Ecological Network Analysis
endogenous
Classical Simultaneous Equation Models
endogMNP
R Package for Fitting Multinomial Probit Models with Endogenous Selection
endorse
R Package for Analyzing Endorsement Experiments
endtoend
Transmissions and Receptions in an End to End Network
energy
E-Statistics: Multivariate Inference via the Energy of Data
energyr
Data Published by the United States Federal Energy Regulatory Commission
english
Translate integers into English
EngrExpt
Data sets from "Introductory Statistics for Engineering Experimentation"
engsoccerdata
English and European Soccer Results 1871-2016
enigma
Client for the 'Enigma' 'API'
ENiRG
Ecological Niche in R and GRASS
ENMeval
Automated Runs and Evaluations of Ecological Niche Models
ENmisc
Neuwirth miscellaneous
enpls
Ensemble Partial Least Squares Regression
EnQuireR
A package dedicated to questionnaires
enRich
An R Package for the Analysis of Multiple ChIP-Seq Data
enrichvs
Enrichment assessment of virtual screening approaches
enrichwith
Methods to Enrich R Objects with Extra Components
EnsembleBase
Extensible Package for Parallel, Batch Training of Base Learners for Ensemble Modeling
ensembleBMA
Probabilistic Forecasting using Ensembles and Bayesian Model Averaging
EnsembleCV
Extensible Package for Cross-Validation-Based Integration of Base Learners
ensembleMOS
Ensemble Model Output Statistics
EnsemblePCReg
Extensible Package for Principal-Component-Regression-Based Heterogeneous Ensemble Meta-Learning
EnsemblePenReg
Extensible Classes and Methods for Penalized-Regression-Based Integration of Base Learners
ensembleR
Ensemble Models in R
ensurer
Ensure Values at Runtime
entropart
Entropy Partitioning to Measure Diversity
entropy
Estimation of Entropy, Mutual Information and Related Quantities
EntropyEstimation
Estimation of Entropy and Related Quantities
EntropyExplorer
Tools for Exploring Differential Shannon Entropy, Differential Coefficient of Variation and Differential Expression
EnvCpt
Detection of Structural Changes in Climate and Environment Time Series
enveomics.R
Various R Functions from the Kostas Lab
enviGCMS
GC-MS Data Analysis for Environmental Science
enviPat
Isotope Pattern, Profile and Centroid Calculation for Mass Spectrometry
enviPick
Peak Picking for High Resolution Mass Spectrometry Data
envirem
Generation of ENVIREM Variables
EnviroStat
Statistical Analysis of Environmental Space-Time Processes
envlpaster
Enveloping the Aster Model
EnvNicheR
Niche Estimation
EnvStats
Package for Environmental Statistics, Including US EPA Guidance
epade
Easy Plots
epandist
Statistical Functions for the Censored and Uncensored Epanechnikov Distribution
epanetReader
Read Epanet Files into R
EPGLM
Gaussian Approximation of Bayesian Binary Regression Models
Epi
A Package for Statistical Analysis in Epidemiology
epibasix
Elementary Epidemiological Functions for Epidemiology and Biostatistics
EpiBayes
Implements Hierarchical Bayesian Models for Epidemiological Applications
EpiContactTrace
Epidemiological Tool for Contact Tracing
epiDisplay
Epidemiological Data Display Package
EpiDynamics
Dynamic Models in Epidemiology
EpiEstim
EpiEstim: a package to estimate time varying reproduction numbers from epidemic curves.
epifit
Flexible Modelling Functions for Epidemiological Data Analysis
EpiModel
Mathematical Modeling of Infectious Disease
epinet
Epidemic/Network-Related Tools
epiR
Tools for the Analysis of Epidemiological Data
episensr
Basic Sensitivity Analysis of Epidemiological Results
episheet
Rothman's Episheet
episplineDensity
Density Estimation with Soft Information by Exponential Epi-splines
epistasis
Detecting Epistatic Selection with Partially Observed Genotype Data
epitools
Epidemiology Tools
EpiWeek
Conversion Between Epidemiological Weeks and Calendar Dates
Eplot
Plotting longitudinal series
epoc
EPoC (Endogenous Perturbation analysis of Cancer)
epr
Easy polynomial regression
EQL
Extended-Quasi-Likelihood-Function (EQL)
eqs2lavaan
EQS Output Conversion to lavaan Functions
eqtl
Tools for analyzing eQTL experiments: A complementary to Karl Broman's 'qtl' package for genome-wide analysis
equate
Observed-Score Linking and Equating
equateIRT
Direct, Chain and Average Equating Coefficients with Standard Errors Using IRT Methods
equivalence
Provides Tests and Graphics for Assessing Tests of Equivalence
erah
Automated Spectral Deconvolution, Alignment, and Metabolite Identification in GC/MS-Based Untargeted Metabolomics
erboost
Nonparametric Multiple Expectile Regression via ER-Boost
erer
Empirical Research in Economics with R
ergm
Fit, Simulate and Diagnose Exponential-Family Models for Networks
ergm.count
Fit, Simulate and Diagnose Exponential-Family Models for Networks with Count Edges
ergm.ego
Fit, Simulate and Diagnose Exponential-Family Random Graph Models to Egocentrically Sampled Network Data
ergm.graphlets
ERG Modeling Based on Graphlet Properties
ergmharris
Local Health Department network data set
ergm.rank
Fit, Simulate and Diagnose Exponential-Family Models for Rank-Order Relational Data
ergm.userterms
User-specified terms for the statnet suite of packages
eRm
Extended Rasch Modeling
ERP
Significance Analysis of Event-Related Potentials Data
erp.easy
Event-Related Potential (ERP) Data Exploration Made Easy
erpR
Event-related potentials (ERP) analysis, graphics and utility functions
errint
Build Error Intervals
errorizer
Function Errorizer
ES
Edge Selection
esaBcv
Estimate Number of Latent Factors and Factor Matrix for Factor Analysis
esaddle
Extended Empirical Saddlepoint Density Approximation
esc
Effect Size Computation for Meta Analysis
ESEA
ESEA: Discovering the Dysregulated Pathways based on Edge Set Enrichment Analysis
ESG
ESG - A package for asset projection
ESGtoolkit
Toolkit for the simulation of financial assets and interest rates models.
ESKNN
Ensemble of Subset of K-Nearest Neighbours Classifiers for Classification and Class Membership Probability Estimation
estatapi
R Interface to e-Stat API
EstCRM
Calibrating Parameters for the Samejima's Continuous IRT Model
EstHer
Estimation of Heritability in High Dimensional Sparse Linear Mixed Models using Variable Selection
estimability
Tools for Assessing Estimability of Linear Predictions
estout
Estimates Output
EstSimPDMP
Estimation and Simulation for PDMPs
etable
Easy Table
ETAS
Modeling Earthquake Data Using ETAS Model
etasFLP
Mixed FLP and ML Estimation of ETAS Space-Time Point Processes
ETC
Equivalence to control
etl
Extract-Transform-Load Framework for Medium Data
ETLUtils
Utility Functions to Execute Standard Extract/Transform/Load Operations (using Package 'ff') on Large Data
etm
Empirical Transition Matrix
etma
Epistasis Test in Meta-Analysis
etrunct
Computes Moments of Univariate Truncated t Distribution
etseed
Client for 'etcd', a 'Key-value' Database
eulerian
eulerian: A package to find eulerian paths from graphs
eulerr
Area-Proportional Euler Diagrams
euroMix
Calculations for DNA Mixtures
europepmc
R Interface to the Europe PubMed Central RESTful Web Service
EurosarcBayes
Bayesian Single Arm Sample Size Calculation Software
eurostat
Tools for Eurostat Open Data
eva
Extreme Value Analysis with Goodness-of-Fit Testing
EvalEst
Dynamic Systems Estimation - Extensions
evaluate
Parsing and Evaluation Tools that Provide More Details than the Default
EvaluationMeasures
Collection of Model Evaluation Measure Functions
Evapotranspiration
Modelling Actual, Potential and Reference Crop Evapotranspiration
evclass
Evidential Distance-Based Classification
evclust
Evidential Clustering
EvCombR
Evidence Combination in R
evd
Functions for Extreme Value Distributions
evdbayes
Bayesian Analysis in Extreme Value Theory
eVenn
A Powerful Tool to Quickly Compare Huge Lists and Draw Venn Diagrams
eventInterval
Sequential Event Interval Analysis
events
Store and manipulate event data
eventstudies
Event study and extreme event analysis
evidenceFactors
Reporting Tools for Sensitivity Analysis of Evidence Factors in Observational Studies
evir
Extreme Values in R
evmix
Extreme Value Mixture Modelling, Threshold Estimation and Boundary Corrected Kernel Density Estimation
evobiR
Comparative and Population Genetic Analyses
evolqg
Tools for Evolutionary Quantitative Genetics
evolvability
Calculation of Evolvability Parameters
Evomorph
Evolutionary Morphometric Simulation
evoper
Evolutionary Parameter Estimation for 'Repast Simphony' Models
EvoRAG
Evolutionary Rates Across Gradients
evt0
Mean of order p, peaks over random threshold Hill and high quantile estimates
evtree
Evolutionary Learning of Globally Optimal Trees
EW
Edgeworth Expansion
EWGoF
Goodness-of-Fit Tests for the Exponential and Two-Parameter Weibull Distributions
Exact
Unconditional Exact Test
exact2x2
Exact Conditional Tests and Confidence Intervals for 2x2 tables
exactci
Exact P-Values and Matching Confidence Intervals for Simple Discrete Parametric Cases
ExactCIdiff
Inductive Confidence Intervals for the difference between two proportions
exactLoglinTest
Monte Carlo Exact Tests for Log-linear models
exactmeta
Exact fixed effect meta analysis
ExactPath
Exact solution paths for regularized LASSO regressions with L_1 penalty
exactRankTests
Exact Distributions for Rank and Permutation Tests
exams
Automatic Generation of Exams in R
ExceedanceTools
Confidence regions for exceedance sets and contour lines
excel.link
Convenient Data Exchange with Microsoft Excel
exCon
Interactive Exploration of Contour Data
excursions
Excursion Sets and Contour Credibility Regions for Random Fields
exif
Read EXIF Metadata from JPEGs
exifr
EXIF Image Data in R
ExomeDepth
Calls Copy Number Variants from Targeted Sequence Data
exp2flux
Convert Gene EXPression Data to FBA FLUXes
expandFunctions
Feature Matrix Builder
expands
Expanding Ploidy and Allele-Frequency on Nested Subpopulations
ExpDE
Modular Differential Evolution for Experimenting with Operators
ExpDes
Experimental Designs package
ExpDes.pt
Pacote Experimental Designs (Portuguese)
expectreg
Expectile and Quantile Regression
experiment
experiment: R package for designing and analyzing randomized experiments
expert
Modeling without data using expert opinion
ExplainPrediction
Explanation of Predictions for Classification and Regression Models
explor
Interactive Interfaces for Results Exploration
exploreR
Tools for Quickly Exploring Data
expm
Matrix Exponential
expoRkit
Expokit in R
ExPosition
Exploratory analysis with the singular value decomposition.
expoTree
Calculate density dependent likelihood of a phylogenetic tree
expp
Spatial analysis of extra-pair paternity
exprso
Rapid Implementation of Machine Learning Algorithms for Genomic Data
expsmooth
Data Sets from "Forecasting with Exponential Smoothing"
expss
Some Useful Functions from Spreadsheets and 'SPSS' Statistics
exptest
Tests for Exponentiality
exreport
Fast, Reliable and Elegant Reproducible Research
EXRQ
Extreme Regression of Quantiles
exsic
Convenience Functions for Botanists to Create Specimens Indices
ExtDist
Extending the Range of Functions for Probability Distributions
exteriorMatch
Constructs the Exterior Match from Two Matched Control Groups
extfunnel
Additional Funnel Plot Augmentations
extlasso
Maximum penalized likelihood estimation with extended lasso penalty
extraBinomial
Extra-binomial approach for pooled sequencing data
extracat
Categorical Data Analysis and Visualization
extraDistr
Additional Univariate and Multivariate Distributions
extrafont
Tools for using fonts
extrafontdb
Package for holding the database for the extrafont package
extraTrees
Extremely Randomized Trees (ExtraTrees) Method for Classification and Regression
ExtremeBounds
Extreme Bounds Analysis (EBA)
extremefit
Estimation of Extreme Conditional Quantiles and Probabilities
extRemes
Extreme Value Analysis
extremeStat
Extreme Value Statistics and Quantile Estimation
extremevalues
Univariate Outlier Detection
extremogram
Estimation of Extreme Value Dependence for Time Series Data
extWeibQuant
Estimate Lower Extreme Quantile with the Censored Weibull MLE and Censored Weibull Mixture
eyelinker
Load Raw Data from Eyelink Eye Trackers
eyetracking
Eyetracking Helper Functions
eyetrackingR
Eye-Tracking Data Analysis
ez
Easy Analysis and Visualization of Factorial Experiments
ezec
Easy Interface to Effective Concentration Calculations
ezglm
selects significant non-additive interaction between two variables using fast GLM implementation.
ezknitr
Avoid the Typical Working Directory Pain When Using 'knitr'
ezsim
provide an easy to use framework to conduct simulation
ezsummary
Generate Data Summary in a Tidy Format
face
Fast Covariance Estimation for Sparse Functional Data
FacPad
Bayesian Sparse Factor Analysis model for the inference of pathways responsive to drug treatment
FactMixtAnalysis
Factor Mixture Analysis with covariates
FACTMLE
Maximum Likelihood Factor Analysis
FactoClass
Combination of Factorial Methods and Cluster Analysis
factoextra
Extract and Visualize the Results of Multivariate Data Analyses
FactoMineR
Multivariate Exploratory Data Analysis and Data Mining
FactoRizationMachines
Machine Learning with Higher-Order Factorization Machines
factorplot
Graphical Presentation of Simple Contrasts
factorQR
Bayesian quantile regression factor models
factorstochvol
Bayesian Estimation of (Sparse) Latent Factor Stochastic Volatility Models
Factoshiny
Perform Factorial Analysis from 'FactoMineR' with a Shiny Application
FACTscorer
Scores the FACT and FACIT Family of Patient-Reported Outcome Measures
factualR
thin wrapper for the Factual.com server API
FADA
Variable Selection for Supervised Classification in High Dimension
FAdist
Distributions that are Sometimes Used in Hydrology
Fahrmeir
Data from the Book "Multivariate Statistical Modelling Based on Generalized Linear Models", First Edition, by Ludwig Fahrmeir and Gerhard Tutz
fail
File Abstraction Interface Layer (FAIL)
FAiR
Factor Analysis in R
faisalconjoint
Faisal Conjoint Model: A New Approach to Conjoint Analysis
fakeR
Simulates Data from a Data Frame of Different Variable Types
falcon
Finding Allele-Specific Copy Number in Next-Generation Sequencing Data
falconx
Finding Allele-Specific Copy Number in Whole-Exome Sequencing Data
fame
Interface for FAME Time Series Database
FamEvent
Family Age-at-Onset Data Simulation and Penetrance Estimation
Familias
Probabilities for Pedigrees Given DNA Data
FAMILY
A Convex Formulation for Modeling Interactions with Strong Heredity
FAmle
Maximum Likelihood and Bayesian Estimation of Univariate Probability Distributions
FAMT
Factor Analysis for Multiple Testing (FAMT) : simultaneous tests under dependence in high-dimensional data
fanc
Penalized Likelihood Factor Analysis via Nonconvex Penalty
fANCOVA
Nonparametric Analysis of Covariance
fancycut
A Fancy Version of 'base::cut'
fanovaGraph
Building Kriging Models from FANOVA Graphs
fanplot
Visualisation of Sequential Probability Distributions Using Fan Charts
FAOSTAT
Download Data from the FAOSTAT Database of the Food and Agricultural Organization (FAO) of the United Nations
faoutlier
Influential Case Detection Methods for Factor Analysis and Structural Equation Models
far
Modelization for Functional AutoRegressive Processes
faraway
Functions and Datasets for Books by Julian Faraway
farff
A Faster 'ARFF' File Reader and Writer
fArma
ARMA Time Series Modelling
farsi
Translate integers into persian
fAsianOptions
EBM and Asian Option Valuation
fAssets
Rmetrics - Analysing and Modelling Financial Assets
fast
Implementation of the Fourier Amplitude Sensitivity Test (FAST)
fastAdaboost
a Fast Implementation of Adaboost
FastBandChol
Fast Estimation of a Covariance Matrix by Banding the Cholesky Factor
fastclime
A Fast Solver for Parameterized LP Problems, Constrained L1 Minimization Approach to Sparse Precision Matrix Estimation and Dantzig Selector
fastcluster
Fast Hierarchical Clustering Routines for R and Python
fastcmh
Significant Interval Discovery with Categorical Covariates
fastcox
Lasso and elastic-net penalized Cox's regression in high dimensions models using the cocktail algorithm
fastdigest
Fast, Low Memory-Footprint Digests of R Objects
fasteraster
Raster Image Processing and Vector Recognition
fastGHQuad
Fast Rcpp implementation of Gauss-Hermite quadrature
FastGP
Efficiently Using Gaussian Processes with Rcpp and RcppEigen
fastGraph
Fast Drawing and Shading of Graphs of Statistical Distributions
FastHCS
Robust Algorithm for Principal Component Analysis
fastHICA
Hierarchical Independent Component Analysis: a Multi-Scale Sparse Non-Orthogonal Data-Driven Basis
fastHorseshoe
The Elliptical Slice Sampler for Bayesian Horseshoe Regression
fastICA
FastICA Algorithms to perform ICA and Projection Pursuit
FastImputation
Learn from Training Data then Quickly Fill in Missing Data
FastKM
A Fast Multiple-Kernel Method Based on a Low-Rank Approximation
FastKNN
Fast k-Nearest Neighbors
fastLSU
Fast Linear Step Up Procedure of Benjamini–Hochberg FDR Method for Huge-Scale Testing Problems
fastM
Fast Computation of Multivariate M-estimators
fastmatch
Fast match() function
FastPCS
FastPCS Robust Fit of Multivariate Location and Scatter
fastpseudo
Fast Pseudo Observations
fastR
Foundations and Applications of Statistics Using R
FastRCS
Fits the FastRCS Robust Multivariable Linear Regression Model
FastRWeb
Fast Interactive Framework for Web Scripting Using R
fastSOM
Fast Calculation of Spillover Measures
fasttime
Fast Utility Function for Time Parsing and Conversion
fat2Lpoly
Two-Locus Family-Based Association Test with Polytomic Outcome
FatTailsR
Kiener Distributions and Fat Tails in Finance
fauxpas
HTTP Error Helpers
favnums
A Dataset of Favourite Numbers
FAwR
Functions and Datasets for "Forest Analytics with R"
fBasics
Rmetrics - Markets and Basic Statistics
fbati
Gene by Environment Interaction and Conditional Gene Tests for Nuclear Families
FBFsearch
Algorithm for Searching the Space of Gaussian Directed Acyclic Graph Models Through Moment Fractional Bayes Factors
FBN
FISH Based Normalization and Copy Number inference of SNP microarray data
fBonds
Bonds and Interest Rate Models
fbRads
Analyzing and Managing Facebook Ads from R
fbRanks
Association Football (Soccer) Ranking via Poisson Regression
fbroc
Fast Algorithms to Bootstrap Receiver Operating Characteristics Curves
fcd
Fused Community Detection
fCertificates
Basics of Certificates and Structured Products Valuation
FCGR
Fatigue Crack Growth in Reliability
fclust
Fuzzy Clustering
FCMapper
Fuzzy Cognitive Mapping
FCNN4R
Fast Compressed Neural Networks for R
fCopulae
Rmetrics - Bivariate Dependence Structures with Copulae
fcros
A Method to Search for Differentially Expressed Genes and to Detect Recurrent Chromosomal Copy Number Aberrations
FD
Measuring functional diversity (FD) from multiple traits, and other tools for functional ecology
fda
Functional Data Analysis
fdakma
Functional Data Analysis: K-Mean Alignment
fdaMixed
Functional data analysis in a mixed model framework
fdapace
Functional Data Analysis and Empirical Dynamics
fdaPDE
Functional Data Analysis and Partial Differential Equations; Statistical Analysis of Functional and Spatial Data, Based on Regression with Partial Differential Regularizations
fdasrvf
Elastic Functional Data Analysis
fdatest
Interval Testing Procedure for Functional Data
fda.usc
Functional Data Analysis and Utilities for Statistical Computing
FDboost
Boosting Functional Regression Models
fdcov
Analysis of Covariance Operators
FDGcopulas
Multivariate Dependence with FDG Copulas
fdq
Forest Data Quality
fdrci
Permutation-Based FDR Point and Confidence Interval Estimation
fdrDiscreteNull
False Discovery Rate Procedure Under Discrete Null Distributions
FDRreg
False discovery rate regression
FDRsampsize
Compute Sample Size that Meets Requirements for Average Power and FDR
fdrtool
Estimation of (Local) False Discovery Rates and Higher Criticism
fds
Functional data sets
fdth
Frequency Distribution Tables, Histograms and Polygons
FeaLect
Scores Features for Feature Selection
feather
R Bindings to the Feather 'API'
feature
Local Inferential Feature Significance for Multivariate Kernel Density Estimation
FeatureHashing
Creates a Model Matrix via Feature Hashing with a Formula Interface
features
Feature Extraction for Discretely-Sampled Functional Data
fechner
Fechnerian Scaling of Discrete Object Sets
fecR
Fishing Effort Calculator in R
FedData
Functions to Automate Downloading Geospatial Data Available from Several Federated Data Sources
federalregister
Client Package for the U.S. Federal Register API
FeedbackTS
Analysis of Feedback in Time Series
feedeR
Read RSS/Atom Feeds from R
FENmlm
Fixed Effects Nonlinear Maximum Likelihood Models
fermicatsR
Fermi Large Area Telescope Catalogs
fExoticOptions
Exotic Option Valuation
fExpressCertificates
fExpressCertificates - Structured Products Valuation for ExpressCertificates/Autocallables
fExtremes
Rmetrics - Extreme Financial Market Data
ff
memory-efficient storage of large data on disk and fast access functions
ffbase
Basic Statistical Functions for Package 'ff'
FFD
Freedom from Disease
FField
Force field simulation for a set of points
ffmanova
Fifty-fifty MANOVA
ffstream
Forgetting Factor Methods for Change Detection in Streaming Data
FFTrees
Generate, Visualise, and Compare Fast and Frugal Decision Trees
fftw
Fast FFT and DCT based on FFTW
fftwtools
Wrapper for FFTW3: Includes 1-D, Univariate and Multivariate, and 2-D Transform
fgac
Generalized Archimedean Copula
FGalgorithm
Flury and Gautschi algorithms
fGarch
Rmetrics - Autoregressive Conditional Heteroskedastic Modelling
Fgmutils
Forest Growth Model Utilities
FGN
Fractional Gaussian Noise and power law decay time series model fitting
fgof
Fast Goodness-of-fit Test
fgpt
Floating Grid Permutation Technique
FGSG
Feature Grouping and Selection Over an Undirected Graph
fgui
Function GUI
fheatmap
Fantastic Heatmap
FHtest
Tests for Right and Interval-Censored Survival Data Based on the Fleming-Harrington Class
FI
Provide functions for forest inventory calculations
FIACH
Retrospective Noise Control for fMRI
fICA
Classical, Reloaded and Adaptive FastICA Algorithms
fields
Tools for Spatial Data
FieldSim
Random Fields (and Bridges) Simulations
fiery
A Lightweight and Flexible Web Framework
fifer
A collection of miscellaneous functions.
fiftystater
Map Data to Visualize the Fifty U.S. States with Alaska and Hawaii Insets
filehash
Simple Key-Value Database
filehashSQLite
Simple key-value database using SQLite
filematrix
File-Backed Matrix Class with Convenient Read and Write Access
filenamer
Easy Management of File Names
files
Effective File Navigation from the R Console
fImport
Rmetrics - Economic and Financial Data Import
FinAna
Financial Analysis and Regression Diagnostic Analysis
financial
Solving financial problems in R
FinancialInstrument
Financial Instrument Model Infrastructure for R
FinAsym
Classifies implicit trading activity from market quotes and computes the probability of informed trading
FinCal
Time Value of Money, Time Series Analysis and Computational Finance
FinCovRegularization
Covariance Matrix Estimation and Regularization for Finance
FindAllRoots
Find all root(s) of the equation and Find root(s) of the equation by dichotomy
FindIt
Finding Heterogeneous Treatment Effects
FindMinIC
Find Models with Minimum IC
findpython
Python tools to find an acceptable python binary
findviews
A View Generator for Multidimensional Data
FinePop
Fine-Scale Population Analysis
fingerprint
Functions for Processing Binary Fingerprint Data
finiteruinprob
Computation of the probability of ruin within a finite time horizon
finreportr
Financial Data from U.S. Securities and Exchange Commission
FinTS
Companion to Tsay (2005) Analysis of Financial Time Series
FisherEM
The Fisher-EM algorithm
fisheyeR
Fisheye and Hyperbolic-space-alike Interactive Visualization Tools in R
FisHiCal
Iterative FISH-based Calibration of Hi-C Data
fishkirkko2015
Dataset of Measurements of Fish Species at Kirkkojarvi Lake, Finland
fishmethods
Fishery Science Methods and Models in R
fishMod
Fits Poisson-Sum-of-Gammas GLMs, Tweedie GLMs, and Delta Log-Normal Models
fishmove
Prediction of Fish Movement Parameters
FIT
Transcriptomic Dynamics Models in Field Conditions
fit4NM
NONMEM platform
FitAR
Subset AR Model Fitting
FitARMA
FitARMA: Fit ARMA or ARIMA using fast MLE algorithm
fitbitScraper
Scrapes Data from Fitbit
fitcoach
Personalized Coach for Fitbit and R API
fitdc
Garmin FIT File Decoder
fitdistrplus
Help to Fit of a Parametric Distribution to Non-Censored or Censored Data
fitDRC
Fitting Density Ratio Classes
fit.models
fit.models
fitplc
Fit Hydraulic Vulnerability Curves
FITSio
FITS (Flexible Image Transport System) Utilities
fitTetra
fitTetra is an R package for assigning tetraploid genotype scores
fixedTimeEvents
The Distribution of Distances Between Discrete Events in Fixed Time
FixSeqMTP
Fixed Sequence Multiple Testing Procedures
fizzbuzzR
Fizz Buzz Implementation
FKF
Fast Kalman Filter
flacco
Feature-Based Landscape Analysis of Continuous and Constraint Optimization Problems
flam
Fits Piecewise Constant Models with Data-Adaptive Knots
flan
FLuctuation ANalysis on Mutation Models
flare
Family of Lasso Regression
flars
Functional LARS
flashClust
Implementation of optimal hierarchical clustering
flexclust
Flexible Cluster Algorithms
flexCWM
Flexible Cluster-Weighted Modeling
flexdashboard
R Markdown Format for Flexible Dashboards
flexmix
Flexible Mixture Modeling
FlexParamCurve
Tools to Fit Flexible Parametric Curves
flexPM
Flexible Parametric Models for Censored and Truncated Data
flexrsurv
Flexible Relative Survival
flexsurv
Flexible Parametric Survival and Multi-State Models
FLIM
Farewell’s Linear Increments Model
flip
Multivariate Permutation Tests
FLLat
Fused Lasso Latent Feature Model
flock
Process Synchronization Using File Locks
flora
Tools for Interacting with the Brazilian Flora 2020
flowDiv
Cytometric Diversity Indices from 'FlowJo' Workspaces
flower
Tools for characterizing flowering traits
flowfield
Forecasts future values of a univariate time series.
flowr
Streamlining Design and Deployment of Complex Workflows
flows
Flow Selection and Analysis
FlowScreen
Daily Streamflow Trend and Change Point Screening
FLR
Fuzzy Logic Rule Classifier
flsa
Path algorithm for the general Fused Lasso Signal Approximator
FLSSS
Multithreaded Fixed Size Subset Sum with Bounded Error in Multidimensional Real Domain
Flury
Data Sets from Flury, 1997
flux
Flux rate calculation from dynamic closed chamber measurements
fma
Data Sets from "Forecasting: Methods and Applications" by Makridakis, Wheelwright & Hyndman (1998)
FME
A Flexible Modelling Environment for Inverse Modelling, Sensitivity, Identifiability and Monte Carlo Analysis
FMP
Filtered Monotonic Polynomial IRT Models
fmri
Analysis of fMRI Experiments
fmrs
Variable Selection in Finite Mixture of AFT Regression and FMR
fmsb
Functions for Medical Statistics Book with some Demographic Data
FMsmsnReg
Regression Models with Finite Mixtures of Skew Heavy-Tailed Errors
FMStable
Finite Moment Stable Distributions
fmt
Variance estimation of FMT method (Fully Moderated t-statistic)
fMultivar
Rmetrics - Analysing and Modeling Multivariate Financial Return Distributions
FNN
Fast Nearest Neighbor Search Algorithms and Applications
fNonlinear
Nonlinear and Chaotic Time Series Modelling
foba
greedy variable selection
fontBitstreamVera
Fonts with Bitstream Vera Fonts Licence
fontcm
Computer Modern font for use with extrafont package
fontLiberation
Liberation Fonts
fontquiver
Set of Installed Fonts
foodweb
visualisation and analysis of food web networks
fOptions
Rmetrics - Pricing and Evaluating Basic Options
forams
Foraminifera and Community Ecology Analyses
forcats
Tools for Working with Categorical Variables (Factors)
foreach
Provides Foreach Looping Construct for R
ForeCA
Forecastable Component Analysis
forecast
Forecasting Functions for Time Series and Linear Models
ForecastCombinations
Forecast Combinations
forecastHybrid
Convenient Functions for Ensemble Time Series Forecasts
forecastSNSTS
Forecasting for Stationary and Non-Stationary Time Series
forecTheta
Forecasting Time Series by Theta Models
forega
Floating-Point Genetic Algorithms with Statistical Forecast Based Inheritance Operator
foreign
Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, Weka, dBase, ...
forensic
Statistical Methods in Forensic Genetics
forensim
Statistical tools for the interpretation of forensic DNA mixtures
forestFloor
Visualizes Random Forests with Feature Contributions
forestinventory
Design-Based Global and Small-Area Estimations for Multiphase Forest Inventories
forestmodel
Forest Plots from Regression Models
forestplot
Advanced Forest Plot Using 'grid' Graphics
ForImp
Imputation of Missing Values Through a Forward Imputation Algorithm
ForIT
Functions from the 2nd Italian Forest Inventory (INFC)
FormalSeries
Elementary arithemtic in formal series rings
formatR
Format R Code Automatically
formattable
Create 'Formattable' Data Structures
Formula
Extended Model Formulas
formula.tools
Utilities for Formulas, Expressions, Calls and Other Objects
fortunes
R Fortunes
forward
Forward search
ForwardSearch
Forward Search using asymptotic theory
fossil
Palaeoecological and Palaeogeographical Analysis Tools
fourierin
Computes Numeric Fourier Integrals
fourPNO
Bayesian 4 Parameter Item Response Model
FourScores
FourScores - A game for two players
fpa
Spatio-Temporal Fixation Pattern Analysis
fpc
Flexible Procedures for Clustering
fpca
Restricted MLE for Functional Principal Components Analysis
FPCA2D
Two Dimensional Functional Principal Component Analysis
fpCompare
Reliable Comparison of Floating Point Numbers
FPDclustering
PD-Clustering and Factor PD-Clustering
fPortfolio
Rmetrics - Portfolio Selection and Optimization
fpow
Computing the noncentrality parameter of the noncentral F distribution
fpp
Data for "Forecasting: principles and practice"
fptdApprox
Approximation of First-Passage-Time Densities for Diffusion Processes
fracdiff
Fractionally differenced ARIMA aka ARFIMA(p,d,q) models
fracprolif
Fraction Proliferation via a Quiescent Growth Model
fractal
Fractal Time Series Modeling and Analysis
fractaldim
Estimation of fractal dimensions
FractalParameterEstimation
Estimation of Parameters p and q for Randomized Sierpinski Carpet for [p-p-p-q]-Model
fractalrock
Generate fractal time series with non-normal returns distribution
FRACTION
Numeric number into fraction
fractional
Vulgar Fractions in R
fragilityindex
Fragility Index
Fragman
Fragment Analysis in R
frailtyHL
Frailty Models via H-likelihood
frailtypack
General Frailty Models: Shared, Joint and Nested Frailty Models with Prediction
frailtySurv
General Semiparametric Shared Frailty Model
frair
Tools for Functional Response Analysis
Frames2
Estimation in Dual Frame Surveys
franc
Detect the Language of Text
FRAPO
Financial Risk Modelling and Portfolio Optimisation with R
FRB
Fast and Robust Bootstrap
frbs
Fuzzy Rule-Based Systems for Classification and Regression Tasks
FRCC
Fast Regularized Canonical Correlation Analysis
FREddyPro
Post-Processing EddyPro Full Output File
freeknotsplines
Free-Knot Splines
FreeSortR
Free Sorting Data Analysis
freestats
Statistical algorithms used in common data mining course
freesurfer
Wrapper Functions for 'Freesurfer'
FREGAT
Family REGional Association Tests
fRegression
Rmetrics - Regression Based Decision and Prediction
FREQ
FREQ: Estimate population size from capture frequencies
freqdist
Frequency Distribution
freqdom
Frequency Domain Analysis for Multivariate Time Series
freqMAP
Frequency Moving Average Plots (MAP) of Multinomial Data by a Continuous Covariate
freqparcoord
Novel Methods for Parallel Coordinates
FreqProf
Frequency Profiles Computing and Plotting
freqweights
Working with Frequency Tables
FRESA.CAD
Feature Selection Algorithms for Computer Aided Diagnosis
FrF2
Fractional Factorial Designs with 2-Level Factors
FrF2.catlg128
Catalogues of resolution IV 128 run 2-level fractional factorials up to 33 factors that do have 5-letter words
frm
Regression Analysis of Fractional Responses
frmhet
Regression Analysis of Fractional Responses Under Unobserved Heterogeneity
frmpd
Regression Analysis of Panel Fractional Responses
frmqa
The Generalized Hyperbolic Distribution, Related Distributions and Their Applications in Finance
fromo
Fast Robust Moments
frontier
Stochastic Frontier Analysis
frontiles
Partial Frontier Efficiency Analysis
frt
Full Randomization Test
FSA
Simple Fisheries Stock Assessment Methods
FSAdata
Data to Support Fish Stock Assessment ('FSA') Package
fscaret
Automated Feature Selection from 'caret'
FSelector
Selecting Attributes
fsia
Import and Analysis of OMR Data from FormScanner
FSInteract
Fast Searches for Interactions
fslr
Wrapper Functions for FSL ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB')
fso
Fuzzy Set Ordination
fSRM
Social Relations Analyses with Roles ("Family SRM")
FTICRMS
Programs for Analyzing Fourier Transform-Ion Cyclotron Resonance Mass Spectrometry Data
ftnonpar
Features and Strings for Nonparametric Regression
fTrading
Technical Trading Analysis
FTRLProximal
FTRL Proximal Implementation for Elastic Net Regression
fts
R interface to tslib (a time series library in c++)
ftsa
Functional Time Series Analysis
ftsspec
Spectral Density Estimation and Comparison for Functional Time Series
fueleconomy
EPA fuel economy data
fugeR
FUzzy GEnetic, a machine learning algorithm to construct prediction model based on fuzzy logic.
fullfact
Full Factorial Breeding Analysis
fulltext
Full Text of 'Scholarly' Articles Across Many Data Sources
fun
Use R for Fun
FunChisq
Chi-Square and Exact Tests for Non-Parametric Functional Dependencies
FunCluster
Functional Profiling of Microarray Expression Data
Funclustering
A package for functional data clustering.
FuncMap
Hive Plots of R Package Function Calls
functional
Curry, Compose, and other higher-order functions
FunctionalNetworks
An algorithm for gene and gene set network inference
functools
Functional Programming in R
funcy
Functional Clustering Algorithms
funData
An S4 Class for Functional Data
funFEM
Clustering in the Discriminative Functional Subspace
fungible
Fungible Coefficients and Monte Carlo Functions
funHDDC
Model-based clustering in group-specific functional subspaces
fUnitRoots
Trends and Unit Roots
funModeling
Learn Data Science Through the "Data Science Live Book"
funr
Simple Utility Providing Terminal Access to all R Functions
funrar
Functional Rarity Indices Computation
funreg
Functional Regression for Irregularly Timed Data
FUNTA
Functional Tangential Angle Pseudo-Depth
funtimes
Functions for Time Series Analysis
furniture
Furniture for Applied Quantitative Researchers
FusedPCA
Community Detection via Fused Principal Component Analysis
futile.any
A Tiny Utility Providing Polymorphic Operations
futile.logger
A Logging Utility for R
futile.matrix
Random Matrix Generation and Manipulation
futile.options
Futile options management
futile.paradigm
A framework for working in a functional programming paradigm in R
future
A Future API for R
future.BatchJobs
A Future for BatchJobs
futureheatwaves
Find, Characterize, and Explore Heat Waves in Climate Projections
fuzzr
Fuzz-Test R Functions
FuzzyAHP
(Fuzzy) AHP Calculation
fuzzyFDR
Exact calculation of fuzzy decision rules for multiple testing
fuzzyforest
Fuzzy Forests
fuzzyjoin
Join Tables Together on Inexact Matching
FuzzyLP
Fuzzy Linear Programming
FuzzyMCDM
Multi-Criteria Decision Making Methods for Fuzzy Data
FuzzyNumbers
Tools to Deal with Fuzzy Numbers
Fuzzy.p.value
Computing Fuzzy p-Value
FuzzyR
Fuzzy Logic Toolkit for R
fuzzyRankTests
Fuzzy Rank Tests and Confidence Intervals
FuzzyStatProb
Fuzzy Stationary Probabilities from a Sequence of Observations of an Unknown Markov Chain
FuzzyToolkitUoN
Type 1 Fuzzy Logic Toolkit
fwdmsa
Forward search for Mokken scale analysis
FWDselect
Selecting Variables in Regression Models
fwi.fbp
Fire Weather Index System and Fire Behaviour Prediction System Calculations
fwsim
Fisher-Wright Population Simulation
fxregime
Exchange Rate Regime Analysis
G1DBN
A package performing Dynamic Bayesian Network inference.
g2f
Find and Fill Gaps in Metabolic Networks
G2Sd
Grain-Size Statistics and Description of Sediment
GA
Genetic Algorithms
GA4Stratification
A genetic algorithm approach to determine stratum boundaries and sample sizes of each stratum in stratified sampling
GAabbreviate
Abbreviating Items Measures using Genetic Algorithms
GABi
Framework for Generalized Subspace Pattern Mining
GAD
GAD: Analysis of variance from general principles
GaDiFPT
First Passage Time Simulation for Gaussian Diffusion Processes
gains
Gains Table Package
GAIPE
Graphical Extension with Accuracy in Parameter Estimation (GAIPE)
galts
Genetic algorithms and C-steps based LTS (Least Trimmed Squares) estimation
gam
Generalized Additive Models
gamair
Data for "GAMs: An Introduction with R"
gambin
Fit the GamBin Model to Species Abundance Distributions
GAMBoost
Generalized linear and additive models by likelihood based boosting
gamboostLSS
Boosting Methods for 'GAMLSS'
gamboostMSM
Estimating multistate models using gamboost()
gamclass
Functions and Data for a Course on Modern Regression and Classification
GAMens
Applies GAMbag, GAMrsm and GAMens Ensemble Classifiers for Binary Classification
games
Statistical Estimation of Game-Theoretic Models
GameTheory
Cooperative Game Theory
GameTheoryAllocation
Tools for Calculating Allocations in Game Theory
gamlr
Gamma Lasso Regression
gamlss
Generalised Additive Models for Location Scale and Shape
gamlss.add
Extra Additive Terms for GAMLSS Models
gamlss.cens
Fitting an Interval Response Variable Using `gamlss.family' Distributions
gamlss.data
GAMLSS Data
gamlss.demo
Demos for GAMLSS
gamlss.dist
Distributions to be Used for GAMLSS Modelling
gamlss.mx
Fitting Mixture Distributions with GAMLSS
gamlss.nl
Fitting non linear parametric GAMLSS models
gamlss.spatial
Spatial Terms in GAMLSS Models
gamlss.tr
Generating and Fitting Truncated `gamlss.family' Distributions
gamlss.util
GAMLSS Utilities
gamm4
Generalized Additive Mixed Models using 'mgcv' and 'lme4'
Gammareg
classic gamma regression: joint modeling of mean and shape parameters
gammSlice
Generalized additive mixed model analysis via slice sampling
gamreg
Robust and Sparse Regression via Gamma-Divergence
gamsel
Fit Regularization Path for Generalized Additive Models
GANPA
Gene Association Network-based Pathway Analysis
GANPAdata
The GANPA Datasets Package
gaoptim
Genetic Algorithm optimization for real-based and permutation-based problems
gap
Genetic Analysis Package
gapfill
Fill Missing Values in Satellite Data
gapmap
Functions for Drawing Gapped Cluster Heatmap with ggplot2
gapminder
Data from Gapminder
GAR
Authorize and Request Google Analytics Data
GAS
Generalized Autoregressive Score Models
gaselect
Genetic Algorithm (GA) for Variable Selection from High-Dimensional Data
gaston
Genetic Data Handling (QC, GRM, LD, PCA) & Linear Mixed Models
gatepoints
Easily Gate or Select Points on a Scatter Plot
GauPro
Gaussian Process Fitting
gaussDiff
Difference measures for multivariate Gaussian probability density functions
gaussfacts
The Greatest Mathematician Since Antiquity
gaussquad
Collection of functions for Gaussian quadrature
gazepath
Parse Eye-Tracking Data into Fixations
gb
Generalize Lambda Distribution and Generalized Bootstrapping
GB2
Generalized Beta Distribution of the Second Kind: Properties, Likelihood, Estimation
gbm
Generalized Boosted Regression Models
gbm2sas
Convert GBM Object Trees to SAS Code
gbRd
Utilities for processing Rd objects and files
gbs2ploidy
Inference of Ploidy from (Genotyping-by-Sequencing) GBS Data
gbts
Hyperparameter Search for Gradient Boosted Trees
gbutils
Simulation of Real and Complex Numbers and Small Programming Utilities
GCAI.bias
Guided Correction Approach for Inherited bias (GCAI.bias)
gCat
Graph-based two-sample tests for categorical data
gcbd
'GPU'/CPU Benchmarking in Debian-Based Systems
GCD
Global Charcoal Database
gcdnet
LASSO and (adaptive) Elastic-Net penalized least squares, logistic regression, HHSVM and squared hinge loss SVM using a fast GCD algorithm
gcerisk
Generalized Competing Event Model
gcKrig
Analyze and Interpolate Geostatistical Count Data using Gaussian Copula
gclus
Clustering Graphics
gcmr
Gaussian Copula Marginal Regression
gconcord
Concord method for Graphical Model Selection
gcookbook
Data for "R Graphics Cookbook"
GCPM
Generalized Credit Portfolio Model
GDAdata
Datasets for the Book Graphical Data Analysis with R
gdalUtils
Wrappers for the Geospatial Data Abstraction Library (GDAL) Utilities
gdata
Various R Programming Tools for Data Manipulation
g.data
Delayed-Data Packages
GDAtools
A toolbox for the analysis of categorical data in social sciences, and especially Geometric Data Analysis.
GDELTtools
Download, slice, and normalize GDELT data
gdimap
Generalized Diffusion Magnetic Resonance Imaging
gdistance
Distances and Routes on Geographical Grids
gdm
Functions for Generalized Dissimilarity Modeling
gdmp
Genomic Data Management
gdns
Tools to Work with Google DNS Over HTTPS API
gdpc
Generalized Dynamic Principal Components
gds
Descriptive Statistics of Grouped Data
gdtools
Utilities for Graphical Rendering
gear
Geostatistical Analysis in R
gee
Generalized Estimation Equation Solver
GEEaSPU
Adaptive Association Tests for Multiple Phenotypes using Generalized Estimating Equations (GEE)
geeM
Solve Generalized Estimating Equations
GEEmediate
Mediation Analysis for Generalized Linear Models Using the Difference Method
geepack
Generalized Estimating Equation Package
geesmv
Modified Variance Estimators for Generalized Estimating Equations
geigen
Calculate Generalized Eigenvalues, the Generalized Schur Decomposition and the Generalized Singular Value Decomposition of a Matrix Pair with Lapack
geiger
Analysis of Evolutionary Diversification
GEint
Misspecified Models for Gene-Environment Interaction
gelnet
Generalized Elastic Nets
gem
File Conversion for 'Gem Infrasound Logger'
gemlog
File Conversion for 'Gem Infrasound Logger'
gems
Generalized Multistate Simulation Model
gemtc
Network Meta-Analysis Using Bayesian Methods
gemtc.jar
GeMTC Java binary
GenABEL
genome-wide SNP association analysis
GenABEL.data
Package contains data which is used by GenABEL example and test functions
genalg
R Based Genetic Algorithm
genasis
Global ENvironmental ASsessment Information System (GENASIS) computational tools
GenBinomApps
Clopper-Pearson Confidence Interval and Generalized Binomial Distribution
GenCAT
Genetic Class Association Testing
gencve
General Cross Validation Engine
gendata
Generate and Modify Synthetic Datasets
gender
Predict Gender from Names Using Historical Data
genderizeR
Gender Prediction Based on First Names
genderNames
Client for the Genderize API That Determines the Gender of Names
gendist
Generated Probability Distribution Models
GENEAread
Package For Reading Binary files
GeneCycle
Identification of Periodically Expressed Genes
GeneF
Package for Generalized F-statistics
GeneFeST
Bayesian calculation of gene-specific FST from genomic SNP data
Geneland
Detection of Structure from Multilocus Genetic Data
geneListPie
Profiling a gene list into GOslim or KEGG function pie
genemodel
Gene Model Plotting in R
GeneNet
Modeling and Inferring Gene Networks
geneNetBP
Belief Propagation in Genotype-Phenotype Networks
genepi
Genetic Epidemiology Design and Inference
generalCorr
Generalized Correlations and Initial Causal Path
generalhoslem
Goodness of Fit Tests for Logistic Regression Models
GeneralizedHyperbolic
The Generalized Hyperbolic Distribution
GeneralOaxaca
Blinder-Oaxaca Decomposition for Generalized Linear Model
GeneralTree
General Tree Data Structure
generator
Generate Data Containing Fake Personally Identifiable Information
GeneReg
Construct time delay gene regulatory network
geneSignatureFinder
A Gene-signatures finder tools
geneSLOPE
Genome-Wide Association Study with SLOPE
genetics
Population Genetics
GeneticSubsetter
Identify Favorable Subsets of Germplasm Collections
GeneticTools
Collection of Genetic Data Analysis Tools
GeNetIt
Spatial Graph-Theoretic Genetic Gravity Modelling
GenForImp
The Forward Imputation: A Sequential Distance-Based Approach for Imputing Missing Data
genie
A New, Fast, and Outlier Resistant Hierarchical Clustering Algorithm
GenKern
Functions for generating and manipulating binned kernel density estimates
genlasso
Path algorithm for generalized lasso problems
GENLIB
Genealogical Data Analysis
genMOSS
Functions for the Bayesian Analysis of GWAS Data
genMOSSplus
Application of MOSS algorithm to genome-wide association study (GWAS)
genomeplot
'Plot genome wide values for all chromosomes'
genomicper
Circular Genomic Permutation using Gwas p-Values of Association
GenomicTools
Collection of Tools for Genomic Data Analysis
genoPlotR
Plot Publication-Grade Gene and Genome Maps
GenOrd
Simulation of Discrete Random Variables with Given Correlation Matrix and Marginal Distributions
genpathmox
Generalized PATHMOX Algorithm for PLS-PM, LS and LAD Regression
genridge
Generalized Ridge Trace Plots for Ridge Regression
GenSA
R Functions for Generalized Simulated Annealing
gensemble
generalized ensemble methods
gensphere
Generalized Spherical Distributions
genSurv
Generating Multi-State Survival Data
GenWin
Spline Based Window Boundaries for Genomic Analyses
geo
Draw and Annotate Maps, Especially Charts of the North Atlantic
geoaxe
Split 'Geospatial' Objects into Pieces
geoBayes
Analysis of Geostatistical Data using Bayes and Empirical Bayes Methods
GeoBoxplot
Geographic Box Plot
geocodeHERE
Wrapper for Nokia's HERE Geocoding API
geoCount
Analysis and Modeling for Geostatistical Count Data
GeoDE
A geometrical Approach to Differential expression and gene-set enrichment
geoelectrics
3D-Visualization of Geoelectric Resistivity Measurement Profiles
geofd
Spatial Prediction for Function Value Data
geoGAM
Select Sparse Geoadditive Models for Spatial Prediction
GeoGenetix
Quantification of the effect of geographic versus environmental isolation on genetic differentiation
geohash
Tools for Geohash Creation and Manipulation
geojson
Classes for 'GeoJSON'
geojsonio
Convert Data from and to 'geoJSON' or 'topoJSON'
geojsonlint
Tools for Validating 'GeoJSON'
geoknife
Web-Processing of Large Gridded Datasets
GeoLight
Analysis of Light Based Geolocator Data
GEOmap
Topographic and Geologic Mapping
geomapdata
Data for topographic and Geologic Mapping
GeomComb
(Geometric) Forecast Combination Methods
geometry
Mesh Generation and Surface Tesselation
geomnet
Network Visualization in the 'ggplot2' Framework
geomorph
Geometric Morphometric Analyses of 2D/3D Landmark Data
geonames
Interface to www.geonames.org web service
geoparser
Interface to the Geoparser.io API for Identifying and Disambiguating Places Mentioned in Text
geophys
Geophysics, Continuum Mechanics, Mogi Models, Gravity
geoR
Analysis of Geostatistical Data
geoRglm
A Package for Generalised Linear Spatial Models
georob
Robust Geostatistical Analysis of Spatial Data
geoscale
Geological Time Scale Plotting
geospacom
Facilitate Generating of Distance Matrices Used in Package 'spacom' and Plotting Data on Maps
geosphere
Spherical Trigonometry
geospt
Geostatistical Analysis and Design of Optimal Spatial Sampling Networks
geosptdb
Spatio-Temporal; Inverse Distance Weighting and Radial Basis Functions with Distance-Based Regression
geostatsp
Geostatistical Modelling with Likelihood and Bayes
geotech
Geotechnical Engineering
geotools
Geo tools
geotopbricks
An R Plug-in for the Distributed Hydrological Model GEOtop
GeoXp
Interactive exploratory spatial data analysis
geozoo
Zoo of Geometric Objects
gepaf
Google Encoded Polyline Algorithm Format
GERGM
Estimation and Fit Diagnostics for Generalized Exponential Random Graph Models
gesca
Generalized Structured Component Analysis (GSCA)
GESE
Gene-Based Segregation Test
gesis
R Client for GESIS Data Catalogue (DBK)
GESTr
Gene Expression State Transformation
GetHFData
Download and Aggregate High Frequency Trading Data from Bovespa
getlandsat
Get Landsat 8 Data from Amazon Public Data Sets
getMet
Get Meteorological Data for Hydrologic Models
getopt
C-like getopt behavior.
GetoptLong
Parsing Command-Line Arguments and Variable Interpolation
getPass
Masked User Input
GetR
GetR: Calculate Guttman error trees in R
gets
General-to-Specific (GETS) Modelling and Indicator Saturation Methods
GetTDData
Get Data for Brazilian Bonds (Tesouro Direto)
gettingtothebottom
Learning Optimization and Machine Learning for Statistics
gettz
Get the Timezone Information
GEVcdn
GEV Conditional Density Estimation Network
GEVStableGarch
ARMA-GARCH/APARCH Models with GEV and Stable Distributions
GExMap
A visual, intuitive, easy to use software giving access to a new type of information buried into your microarray data.
GFA
Group Factor Analysis
gfcanalysis
Tools for Working with Hansen et al. Global Forest Change Dataset
GFD
Tests for General Factorial Designs
GGally
Extension to 'ggplot2'
ggalt
Extra Coordinate Systems, Geoms and Statistical Transformations for 'ggplot2'
ggbeeswarm
Categorical Scatter (Violin Point) Plots
ggcorrplot
Visualization of a Correlation Matrix using 'ggplot2'
ggdendro
Create Dendrograms and Tree Diagrams Using 'ggplot2'
ggdmc
Dynamic Model of Choice with Parallel Computation, and C++ Capabilities
gge
Genotype Plus Genotype-by-Environment Biplots
GGEBiplotGUI
Interactive GGE Biplots in R
ggenealogy
Visualization Tools for Genealogical Data
ggExtra
Add Marginal Histograms to 'ggplot2', and More 'ggplot2' Enhancements
ggforce
Accelerating 'ggplot2'
ggfortify
Data Visualization Tools for Statistical Analysis Results
ggghost
Capture the Spirit of Your 'ggplot2' Calls
ggguitar
Utilities for Creating Guitar Tablature
GGIR
Raw Accelerometer Data Analysis
ggiraph
Make 'ggplot2' Graphics Interactive
ggiraphExtra
Make Interactive 'ggplot2'. Extension to 'ggplot2' and 'ggiraph'
gglasso
Group Lasso Penalized Learning Using A Unified BMD Algorithm
gglogo
Geom for Logo Sequence Plots
ggloop
Create 'ggplot2' Plots in a Loop
ggm
Functions for graphical Markov models
ggmap
Spatial Visualization with ggplot2
ggmcmc
Tools for Analyzing MCMC Simulations from Bayesian Inference
GGMridge
Gaussian Graphical Models Using Ridge Penalty Followed by Thresholding and Reestimation
GGMselect
Gaussian Graphs Models Selection
ggnetwork
Geometries to Plot Networks with 'ggplot2'
ggparallel
Variations of Parallel Coordinate Plots for Categorical Data
ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
ggplot2movies
Movies Data
ggpmisc
Miscellaneous Extensions to 'ggplot2'
ggpolypath
Polygons with Holes for the Grammar of Graphics
ggpubr
'ggplot2' Based Publication Ready Plots
ggRandomForests
Visually Exploring Random Forests
ggraptR
Allows Interactive Visualization of Data Through a Web Browser GUI
ggrepel
Repulsive Text and Label Geoms for 'ggplot2'
ggROC
package for roc curve plot with ggplot2
ggsci
Scientific Journal and Sci-Fi Themed Color Palettes for 'ggplot2'
ggseas
'stats' for Seasonal Adjustment on the Fly with 'ggplot2'
ggsn
North Symbols and Scale Bars for Maps Created with 'ggplot2' or 'ggmap'
ggspectra
Extensions to 'ggplot2' for Radiation Spectra
ggstance
Horizontal 'ggplot2' Components
ggswissmaps
Offers Various Swiss Maps as Data Frames and 'ggplot2' Objects
ggtern
An Extension to 'ggplot2', for the Creation of Ternary Diagrams
ggThemeAssist
Add-in to Customize 'ggplot2' Themes
ggthemes
Extra Themes, Scales and Geoms for 'ggplot2'
ggvis
Interactive Grammar of Graphics
GHap
Genome-Wide Haplotyping
ghit
Lightweight GitHub Package Installer
GHQp
Gauss Hermite Quadrature with pruning.
ghyp
A Package on Generalized Hyperbolic Distribution and Its Special Cases
GiANT
Gene Set Uncertainty in Enrichment Analysis
GibbsACOV
Gibbs Sampler for One-Way Mixed-Effects ANOVA and ANCOVA Models
gibbs.met
Naive Gibbs Sampling with Metropolis Steps
GIGrvg
Random Variate Generator for the GIG Distribution
GillespieSSA
Gillespie's Stochastic Simulation Algorithm (SSA)
gimme
Group Iterative Multiple Model Estimation
gimms
Download and Process GIMMS NDVI3g Data
GiNA
High Throughput Phenotyping
GiniWegNeg
Computing the Gini-Based Coefficients for Weighted and Negative Attributes
gIPFrm
Generalized Iterative Proportional Fitting for Relational Models
GiRaF
Gibbs Random Fields Analysis
giRaph
The giRaph package for graph representation in R
GISTools
Some further GIS capabilities for R
gistr
Work with 'GitHub' 'Gists'
git2r
Provides Access to Git Repositories
gitgadget
Rstudio Addin for Version Control and Assignment Management using Git
githubinstall
A Helpful Way to Install R Packages Hosted on GitHub
gitlabr
Access to the Gitlab API
gitter
Quantification of Pinned Microbial Cultures
givitiR
The GiViTI Calibration Test and Belt
Giza
Constructing panels of population pyramid plots based on lattice
gjam
Generalized Joint Attribute Modeling
GK2011
Gaines and Kuklinski (2011) Estimators for Hybrid Experiments
gkmSVM
Gapped-Kmer Support Vector Machine
glamlasso
Penalization in Large Scale Generalized Linear Array Models
glarma
Generalized Linear Autoregressive Moving Average Models
glasso
Graphical lasso- estimation of Gaussian graphical models
glba
General Linear Ballistic Accumulator Models
glcm
Calculate Textures from Grey-Level Co-Occurrence Matrices (GLCMs)
gld
Estimation and Use of the Generalised (Tukey) Lambda Distribution
GLDEX
Fitting Single and Mixture of Generalised Lambda Distributions (RS and FMKL) using Various Methods
gldist
An Asymmetry-Steepness Parameterization of the Generalized Lambda Distribution.
GLDreg
Fit GLD Regression Model and GLD Quantile Regression Model to Empirical Data
glinternet
Learning Interactions via Hierarchical Group-Lasso Regularization
gllm
Generalised log-linear model
glm2
Fitting Generalized Linear Models
glmbb
All Hierarchical or Graphical Models for Generalized Linear Model
glmBfp
Bayesian Fractional Polynomials for GLMs
glmc
Fitting Generalized Linear Models Subject to Constraints
glm.ddR
Distributed 'glm' for Big Data using 'ddR' API
glmdm
R Code for Simulation of GLMDM
glmgraph
Graph-Constrained Regularization for Sparse Generalized Linear Models
glmlep
Fit GLM with LEP-based penalized maximum likelihood
glmm
Generalized Linear Mixed Models via Monte Carlo Likelihood Approximation
glmmBUGS
Generalised Linear Mixed Models with BUGS and JAGS
glmmGS
Gauss-Seidel Generalized Linear Mixed Model solver
glmmLasso
Variable Selection for Generalized Linear Mixed Models by L1-Penalized Estimation
glmmML
Generalized linear models with clustering
GLMMRR
Generalized Linear Mixed Model (GLMM) for Binary Randomized Response Data
glmmsr
Fit a Generalized Linear Mixed Model
glmnet
Lasso and Elastic-Net Regularized Generalized Linear Models
glmnetcr
Fit a penalized constrained continuation ratio model for predicting an ordinal response
glmpath
L1 Regularization Path for Generalized Linear Models and Cox Proportional Hazards Model
glmpathcr
Fit a penalized continuation ratio model for predicting an ordinal response.
glm.predict
Predicted Values and Discrete Changes for GLM
glmulti
Model selection and multimodel inference made easy
glmvsd
Variable Selection Deviation Measures and Instability Tests for High-Dimensional Generalized Linear Models
glmx
Generalized Linear Models Extended
globalboosttest
Testing the additional predictive value of high-dimensional data
GlobalDeviance
Global Deviance Permutation Tests
GlobalFit
Bi-Level Optimization of Metabolic Network Models
globalGSA
Global Gene-Set Analysis for Association Studies.
GlobalOptions
Generate Functions to Get or Set Global Options
globalOptTests
Objective functions for benchmarking the performance of global optimization algorithms
globals
Identify Global Objects in R Expressions
globe
Plot 2D and 3D Views of the Earth, Including Major Coastline
glogis
Fitting and Testing Generalized Logistic Distributions
glpkAPI
R Interface to C API of GLPK
glrt
Generalized Logrank Tests for Interval-censored Failure Time Data
GLSME
Generalized Least Squares with Measurement Error
glycanr
Tools for Analysing N-Glycan Data
gmailr
Access the Gmail RESTful API
gmapsdistance
Distance and Travel Time Between Two Points from Google Maps
gmatrix
GPU Computing in R
GMCM
Fast Estimation of Gaussian Mixture Copula Models
gMCP
Graph Based Multiple Comparison Procedures
GMD
Generalized Minimum Distance of distributions
gmDatabase
Accessing a Geometallurgical Database with R
GMDH
Short Term Forecasting via GMDH-Type Neural Network Algorithms
Gmedian
Geometric Median, k-Median Clustering and Robust Median PCA
gmeta
Meta-Analysis via a Unified Framework of Confidence Distribution
Gmisc
Descriptive Statistics, Transition Plots, and More
gmm
Generalized Method of Moments and Generalized Empirical Likelihood
GMMBoost
Likelihood-based Boosting for Generalized mixed models
gmnl
Multinomial Logit Models with Random Parameters
gmodels
Various R Programming Tools for Model Fitting
gmp
Multiple Precision Arithmetic
gmt
Interface between GMT Map-Making Software and R
gmum.r
GMUM Machine Learning Group Package
gmwm
Generalized Method of Wavelet Moments
gMWT
Generalized Mann-Whitney Type Tests
GNE
Computation of Generalized Nash Equilibria
gnm
Generalized Nonlinear Models
gnmf
Generalized Non-negative Matrix Factorization Based on Renyi Divergence
gnumeric
Read Data from Files Readable by 'gnumeric'
goalprog
Weighted and lexicographical goal programming and optimization
goeveg
Functions for Community Data and Ordinations
gof
Model-diagnostics based on cumulative residuals
gofCopula
Goodness-of-Fit Tests for Copulae
GoFKernel
Testing Goodness-of-Fit with the Kernel Density Estimator
GofKmt
Khmaladze Martingale Transformation Goodness-of-Fit Test
goft
Tests of Fit for some Probability Distributions
goftest
Classical Goodness-of-Fit Tests for Univariate Distributions
gogamer
Go Game Data Parser
GOGANPA
GO-Functional-Network-based Gene-Set-Analysis
gogarch
Generalized Orthogonal GARCH (GO-GARCH) models
goldi
Gene Ontology Label Discernment and Identification
GoodmanKruskal
Association Analysis for Categorical Variables
googleAnalyticsR
Google Analytics API into R
googleAuthR
Easy Authentication with Google OAuth2 API
googleCloudStorageR
R Interface with Google Cloud Storage
googleComputeEngineR
R Interface with Google Compute Engine
googleformr
Collect Data Programmatically by POST Methods to Google Forms
googlePublicData
Working with Google Public Data Explorer DSPL Metadata Files
googlesheets
Manage Google Spreadsheets from R
googleVis
R Interface to Google Charts
googleway
Retrieves Data from Google Maps APIs
GOplot
Visualization of Functional Analysis Data
GORCure
Fit Generalized Odds Rate Mixture Cure Model with Interval Censored Data
goric
Generalized Order-Restricted Information Criterion
govStatJPN
functions to get public survey data in Japan
gower
Gower's Distance
gpairs
gpairs: The Generalized Pairs Plot
GPareto
Gaussian Processes for Pareto Front Estimation and Optimization
GPArotation
GPA Factor Rotation
GPC
Generalized Polynomial Chaos
gPCA
Batch Effect Detection via Guided Principal Components Analysis
gpclib
General Polygon Clipping Library for R
GPCSIV
GPCSIV, Generalized Principal Component of Symbolic Interval variables
gpDDE
General Profiling Method for Delay Differential Equation
gPdtest
Bootstrap goodness-of-fit test for the generalized Pareto distribution
GPFDA
Apply Gaussian Process in Functional data analysis
GPfit
Gaussian Processes Modeling
gpg
GNU Privacy Guard for R
gpk
100 Data Sets for Statistics Education
gplm
Generalized Partial Linear Models (GPLM)
gplots
Various R Programming Tools for Plotting Data
GPLTR
Generalized Partially Linear Tree-Based Regression Model
gpmap
Analysing and plotting genotype-phenotype maps
gpr
A Minimalistic package to apply Gaussian Process in R
GPrank
Gaussian Process Ranking of Multiple Time Series
gProfileR
Interface to the 'g:Profiler' Toolkit
GPseq
gpseq: Using the generalized Poisson distribution to model sequence read counts from high throughput sequencing experiments
gptk
Gaussian Processes Tool-Kit
gpuR
GPU Functions for R Objects
gputools
A Few GPU Enabled Functions
GPvam
Maximum Likelihood Estimation of Multiple Membership Mixed Models Used in Value-Added Modeling
gquad
G Quadruplex Motif Prediction Tool
Grace
Graph-Constrained Estimation and Hypothesis Tests
grade
Binary Grading functions for R.
GRaF
Species distribution modelling using latent Gaussian random fields
gRain
Graphical Independence Networks
gramEvol
Grammatical Evolution for R
GrammR
Graphical Representation and Modeling of Metagenomic Reads
GRANBase
Creating Continuously Integrated Package Repositories from Manifests
granova
Graphical Analysis of Variance
granovaGG
Graphical Analysis of Variance Using ggplot2
GRAPE
Gene-Ranking Analysis of Pathway Expression
gRapfa
Acyclic Probabilistic Finite Automata
gRapHD
Efficient selection of undirected graphical models for high-dimensional datasets
GrapheR
A Multi-Platform GUI for Drawing Customizable Graphs in R
GraphFactor
Network Topology of Intravariable Clusters with Intervariable Links
graphicalVAR
Graphical VAR for Experience Sampling Data
graphicsQC
Quality Control for Graphics in R
graphql
A GraphQL Query Parser
graphscan
Cluster Detection with Hypothesis Free Scan Statistic
graphTweets
Visualise Twitter Interactions
GrassmannOptim
Grassmann Manifold Optimization
graticule
Meridional and Parallel Lines for Maps
gRbase
A Package for Graphical Modelling in R
gRc
Inference in Graphical Gaussian Models with Edge and Vertex Symmetries
Greg
Regression Helper Functions
greport
Graphical Reporting for Clinical Trials
grex
Gene ID Mapping for Genotype-Tissue Expression (GTEx) Data
greyzoneSurv
Fit a Grey-Zone Model with Survival Data
Grid2Polygons
Convert Spatial Grids to Polygons
gridBase
Integration of base and grid graphics
gridDebug
Debugging 'grid' Graphics
gridExtra
Miscellaneous Functions for "Grid" Graphics
gridGraphics
Redraw Base Graphics Using 'grid' Graphics
gridGraphviz
Drawing Graphs with 'grid'
gridsample
Tools for Grid-Based Survey Sampling Design
gridsampler
A Simulation Tool to Determine the Required Sample Size for Repertory Grid Studies
gridSVG
Export 'grid' Graphics as SVG
GriegSmith
Uses Grieg-Smith method on 2 dimentional spatial data
gRim
Graphical Interaction Models
grImport
Importing Vector Graphics
grnn
General regression neural network
groc
Generalized Regression on Orthogonal Components
grofit
The package was developed to fit fit many growth curves obtained under different conditions.
gromovlab
Gromov-Hausdorff Type Distances for Labeled Metric Spaces
grouped
Regression Analysis of Grouped and Coarse Data
groupRemMap
Regularized Multivariate Regression for Identifying Master Predictors Using the GroupRemMap Penalty
GroupSeq
A GUI-Based Program to Compute Probabilities Regarding Group Sequential Designs
GroupTest
Multiple Testing Procedure for Grouped Hypotheses
growcurves
Bayesian Semi and Nonparametric Growth Curve Models that Additionally Include Multiple Membership Random Effects
growfunctions
Bayesian Non-Parametric Dependent Models for Time-Indexed Functional Data
growthcurver
Simple Metrics to Summarize Growth Curves
growthmodels
Nonlinear Growth Models
growthrate
Bayesian reconstruction of growth velocity
growthrates
Estimate Growth Rates from Experimental Data
grplasso
Fitting user specified models with Group Lasso penalty
grppenalty
Concave 1-norm and 2-norm group penalty in linear and logistic regression
grpreg
Regularization Paths for Regression Models with Grouped Covariates
grpregOverlap
Penalized Regression Models with Overlapping Grouped Covariates
grpSLOPE
Group Sorted L1 Penalized Estimation
grpss
Group Screening and Selection
grr
Alternative Implementations of Base R Functions
GRS.test
GRS Test for Portfolio Efficiency and Its Statistical Power Analysis
grt
General Recognition Theory
GRTo
Tools for the Analysis of Gutenberg-Richter Distributions of Earthquake Magnitudes
GSA
Gene set analysis
GSAgm
Gene Set Analysis using the Gamma Method
gsalib
Utility Functions For GATK
GSAQ
Gene Set Analysis with QTL
gsarima
Two functions for Generalized SARIMA time series simulation
gsbDesign
Group Sequential Bayes Design
gsDesign
Group Sequential Design
GSE
Robust Estimation in the Presence of Cellwise and Casewise Contamination and Missing Data
gsEasy
Gene Set Enrichment Analysis in R
GSED
Group Sequential Enrichment Design
gSeg
Graph-Based Change-Point Detection (g-Segmentation)
gSEM
Semi-Supervised Generalized Structural Equation Modeling
gset
Group Sequential Design in Equivalence Studies
gsg
Calculation of selection coefficients
gsheet
Download Google Sheets Using Just the URL
GSIF
Global Soil Information Facilities
gskat
GEE_KM
gsl
wrapper for the Gnu Scientific Library
GSM
Gamma Shape Mixture
gsmoothr
Smoothing tools
GSMX
Multivariate Genomic Selection
GSODR
Download, Clean and Generate New Variables from GSOD Data
gsrc
Genome Structure Rearrangement Calling in Genomes with High Synteny
gss
General Smoothing Splines
gsscopu
Copula Density and 2-D Hazard Estimation using Smoothing Splines
GSSE
Genotype-Specific Survival Estimation
gstat
Spatial and Spatio-Temporal Geostatistical Modelling, Prediction and Simulation
gsubfn
Utilities for strings and function arguments.
gsw
Gibbs Sea Water Functions
GsymPoint
Estimation of the Generalized Symmetry Point, an Optimal Cutpoint in Continuous Diagnostic Tests
gtable
Arrange 'Grobs' in Tables
gtcorr
Calculate efficiencies of group testing algorithms with correlated responses
gte
Generalized Turnbull's Estimator
gTests
Graph-Based Two-Sample Tests
gtheory
Apply Generalizability Theory with R
gtools
Various R Programming Tools
gtop
Game-Theoretically OPtimal (GTOP) Reconciliation Method
gtrendsR
Perform and Display Google Trends Queries
gtx
Genetics ToolboX
GuardianR
The Guardian API Wrapper
Guerry
Maps, data and methods related to Guerry (1833) "Moral Statistics of France"
guess
Adjust Estimates of Learning for Guessing
GUIDE
GUI for DErivatives in R
GUILDS
Implementation of Sampling Formulas for the Unified Neutral Model of Biodiversity and Biogeography, with or without Guild Structure
GUIProfiler
Graphical User Interface for Rprof()
gumbel
The Gumbel-Hougaard Copula
GUniFrac
Generalized UniFrac distances
gunsales
Statistical Analysis of Monthly Background Checks of Gun Purchases
gutenbergr
Download and Process Public Domain Works from Project Gutenberg
GUTS
Fast Calculation of the Likelihood of a Stochastic Survival Model
gvc
Global Value Chains Tools
gvcm.cat
Regularized Categorical Effects/Categorical Effect Modifiers/Continuous/Smooth Effects in GLMs
gvlma
Global Validation of Linear Models Assumptions
GWAF
Genome-Wide Association/Interaction Analysis and Rare Variant Analysis with Family Data
GWASExactHW
Exact Hardy-Weinburg testing for Genome Wide Association Studies
gwdegree
A Shiny App to Aid Interpretation of Geometrically-Weighted Degree Estimates in Exponential Random Graph Models
gwerAM
Controlling the genome-wide type I error rate in association mapping experiments
gwfa
Geographically Weighted Fractal Analysis
GWG
Calculation of probabilities for inadequate and excessive gestational weight gain
gWidgets
gWidgets API for building toolkit-independent, interactive GUIs
gWidgets2
Rewrite of gWidgets API for Simplified GUI Construction
gWidgets2RGtk2
Implementation of gWidgets2 for the RGtk2 Package
gWidgets2tcltk
Toolkit Implementation of gWidgets2 for tcltk
gWidgetsRGtk2
Toolkit implementation of gWidgets for RGtk2
gWidgetstcltk
Toolkit implementation of gWidgets for tcltk package
GWLelast
Geographically Weighted Logistic Elastic Net Regression
GWmodel
Geographically-Weighted Models
gWQS
Generalized Weighted Quantile Sum Regression
GWRM
Generalized Waring Regression Model for Count Data
gwrr
Fits geographically weighted regression models with diagnostic tools
GWsignif
Estimating Genome-Wide Significance for Whole Genome Sequencing Studies, Either Single SNP Tests or Region-Based Tests
GxM
Maximum Likelihood Estimation for Gene-by-Measured Environment Interaction Models
gym
Provides Access to the OpenAI Gym API
gyriq
Kinship-Adjusted Survival SNP-Set Analysis
h2o
R Interface for H2O
h5
Interface to the 'HDF5' Library
haarfisz
Software to perform Haar Fisz transforms
HAC
Estimation, Simulation and Visualization of Hierarchical Archimedean Copulae (HAC)
HadoopStreaming
Utilities for using R scripts in Hadoop streaming
hail
Read HYDRA Rainfall Data
hamlet
Hierarchical Optimal Matching and Machine Learning Toolbox
HandTill2001
Multiple Class Area under ROC Curve
Hankel
Univariate non-parametric two-sample test based on empirical Hankel transforms.
hansard
Provides Easy Downloading Capabilities for the UK Parliament API
hapassoc
Inference of Trait Associations with SNP Haplotypes and Other Attributes using the EM Algorithm
HapEstXXR
Multi-Locus Stepwise Regression
HAPim
HapIM
Haplin
Analyzing Case-Parent Triad and/or Case-Control Data with SNP Haplotypes
haplo.ccs
Estimate Haplotype Relative Risks in Case-Control Data
haploReconstruct
Reconstruction of Haplotype-Blocks from Time Series Data
HaploSim
Functions to simulate haplotypes
haplo.stats
Statistical Analysis of Haplotypes with Traits and Covariates when Linkage Phase is Ambiguous
haplotyper
Tool for Clustering Genotypes in Haplotypes
haplotypes
Haplotype Inference and Statistical Analysis of Genetic Variation
HAP.ROR
Recursive Organizer (ROR)
HardyWeinberg
Statistical Tests and Graphics for Hardy-Weinberg Equilibrium
HarmonicRegression
Harmonic Regression to One or more Time Series
HARtools
Read HTTP Archive ('HAR') Data
harvestr
A Parallel Simulation Framework
Harvest.Tree
Harvest the Classification Tree
hash
Full feature implementation of hash/associated arrays/dictionaries
hashFunction
A collection of non-cryptographic hash functions
hashids
Generate Short Unique YouTube-Like IDs (Hashes) from Integers
hashmap
The Faster Hash Map
hashr
Hash R Objects to Integers Fast
hasseDiagram
Drawing Hasse diagram
haven
Import and Export 'SPSS', 'Stata' and 'SAS' Files
hawkes
Hawkes process simulation and calibration toolkit
hazus
Damage functions from FEMA's HAZUS software for use in modeling financial losses from natural disasters
hBayesDM
Hierarchical Bayesian Modeling of Decision-Making Tasks
HBglm
Hierarchical Bayesian Regression for GLMs
hbim
Hill/Bliss Independence Model for Combination Vaccines
hbm
Hierarchical Block Matrix Analysis
hbmem
Hierarchical Bayesian Analysis of Recognition Memory
hbsae
Hierarchical Bayesian Small Area Estimation
HBSTM
Hierarchical Bayesian Space-Time models for Gaussian space-time data.
hcc
Hidden correlation check
hcci
Interval estimation for the parameters of linear models with heteroskedasticity (Wild Bootstrap)
hcp
Change Point Estimation for Regression with Heteroscedastic Data
hda
Heteroscedastic Discriminant Analysis
HDclassif
High Dimensional Supervised Classification and Clustering
HDDesign
Sample Size Calculation for High Dimensional Classification Study
hddplot
Use Known Groups in High-Dimensional Data to Derive Scores for Plots
hddtools
Hydrological Data Discovery Tools
hdeco
Hierarchical DECOmposition of Entropy for Categorical Map Comparisons
HDGLM
Tests for High Dimensional Generalized Linear Models
hdi
High-Dimensional Inference
HDInterval
Highest (Posterior) Density Intervals
hdlm
Fitting High Dimensional Linear Models
hdm
High-Dimensional Metrics
HDMD
Statistical Analysis Tools for High Dimension Molecular Data (HDMD)
hdnom
Nomograms for High-Dimensional Cox Models
HDoutliers
Leland Wilkinson's Algorithm for Detecting Multidimensional Outliers
hdpca
Principal Component Analysis in High-Dimensional Data
HDPenReg
High-Dimensional Penalized Regression
hdr
Interface to the UNDR Human Development Report API
hdrcde
Highest density regions and conditional density estimation
HDtweedie
The Lasso for the Tweedie's Compound Poisson Model Using an IRLS-BMD Algorithm
HEAT
Health Effects of Air Pollution and Temperature (HEAT)
heatex
Heat exchange calculations during physical activity.
heatmap3
An Improved Heatmap Package
heatmapFit
Fit Statistic for Binary Dependent Variable Models
heatmaply
Interactive Heat Maps Using 'plotly'
heatmap.plus
Heatmap with more sensible behavior.
heavy
Robust Estimation Using Heavy-Tailed Distributions
heemod
Models for Health Economic Evaluation
hellno
Providing 'stringsAsFactors=FALSE' Variants of 'data.frame()' and 'as.data.frame()'
helloJavaWorld
Hello Java World
HelpersMG
Tools for Earth Meteorological Analysis
helsinki
R Tools for Helsinki Open Data
heplots
Visualizing Hypothesis Tests in Multivariate Linear Models
hergm
Hierarchical Exponential-Family Random Graph Models
heritability
Marker-Based Estimation of Heritability Using Individual Plant or Plot Data
hermite
Generalized Hermite Distribution
hetmeta
Heterogeneity Measures in Meta-Analysis
hett
Heteroscedastic t-regression
het.test
White's Test for Heteroskedasticity
heuristica
Heuristics Including Take the Best and Unit-Weight Linear
hexbin
Hexagonal Binning Routines
hextri
Hexbin Plots with Triangles
hexView
Viewing Binary Files
hflights
Flights that departed Houston in 2011
hgam
High-dimensional Additive Modelling
hglasso
Learning graphical models with hubs
hglm
Hierarchical Generalized Linear Models
hglm.data
Data for The hglm Package
hgm
Holonomic Gradient Method and Gradient Descent
HGNChelper
Handy Functions for Working With HGNC Gene Symbols and Affymetrix Probeset Identifiers.
HH
Statistical Analysis and Data Display: Heiberger and Holland
HHG
Heller-Heller-Gorfine Tests of Independence and Equality of Distributions
hht
The Hilbert-Huang Transform: Tools and Methods
HI
Simulation from distributions supported by nested hyperplanes
HIBPwned
Bindings for the 'HaveIBeenPwned.com' Data Breach API
HiCfeat
Multiple Logistic Regression for 3D Chromatin Domain Border Analysis
HiCglmi
Probing Factor-Dependent Long-Range Contacts using Regression with Higher-Order Interaction Terms
HiClimR
Hierarchical Climate Regionalization
HiCseg
Detection of domains in HiC data
hiddenf
The All-Configurations, Maximum-Interaction F-Test for Hidden Additivity
HiddenMarkov
Hidden Markov Models
HiDimDA
High Dimensional Discriminant Analysis
HiDimMaxStable
Inference on High Dimensional Max-Stable Distributions
hierarchicalDS
Functions For Performing Hierarchical Analysis of Distance Sampling Data
hierarchicalSets
Set Data Visualization Using Hierarchies
hierband
Convex Banding of the Covariance Matrix
hierDiversity
Hierarchical Multiplicative Partitioning of Complex Phenotypes
hierformR
Analysis of Dynamics Hierarchy Formation
hierfstat
Estimation and Tests of Hierarchical F-Statistics
hierNet
A Lasso for Hierarchical Interactions
HierO
A graphical user interface for calculating power and sample size for hierarchical data
hier.part
Hierarchical Partitioning
hiertest
Convex Hierarchical Testing of Interactions
HIest
Hybrid index estimation
highcharter
A Wrapper for the 'Highcharts' Library
highD2pop
Two-Sample Tests for Equality of Means in High Dimension
HighDimOut
Outlier Detection Algorithms for High-Dimensional Data
highfrequency
Tools For Highfrequency Data Analysis
highlight
Syntax Highlighter
highmean
Two-Sample Tests for High-Dimensional Mean Vectors
highr
Syntax Highlighting for R Source Code
highriskzone
Determining and Evaluating High-Risk Zones
highSCREEN
High Throughput Screening for Plate Based Essays
highTtest
Simultaneous Critical Values for t-Tests in Very High Dimensions
hillmakeR
Perform occupancy analysis
HiLMM
Estimation of Heritability in Linear Mixed Models
hindexcalculator
H-Index Calculator using Data from a Web of Science (WoS) Citation Report
hint
Tools for hypothesis testing based on Hypergeometric Intersection distributions
HiPLARM
High Performance Linear Algebra in R
hiPOD
hierarchical Pooled Optimal Design
hisemi
Hierarchical Semiparametric Regression of Test Statistics
hisse
Hidden State Speciation and Extinction
HistData
Data Sets from the History of Statistics and Data Visualization
HistDAWass
Histogram-Valued Data Analysis
histmdl
A Most Informative Histogram-Like Model
histogram
Construction of Regular and Irregular Histograms with Different Options for Automatic Choice of Bins
HistogramTools
Utility Functions for R Histograms
historydata
Data Sets for Historians
hit
Hierarchical Inference Testing
hitandrun
"Hit and Run" and "Shake and Bake" for Sampling Uniformly from Convex Shapes
hive
Hadoop InteractiVE
HiveR
2D and 3D Hive Plots for R
HIV.LifeTables
HIV calibrated model life tables for countries with generalized HIV epidemics
HK80
Conversion Tools for HK80 Geographical Coordinate System
hkclustering
Ensemble Clustering using K Means and Hierarchical Clustering
hkevp
Spatial Extreme Value Analysis with the Hierarchical Model of Reich and Shaby (2012)
hkex.api
API to Retrieve Data from Hong Kong Stock Exchange
HKprocess
Hurst-Kolmogorov Process
HLMdiag
Diagnostic Tools for Hierarchical (Multilevel) Linear Models
HLSM
Hierarchical Latent Space Network Model
HMDHFDplus
Read HMD and HFD Data from the Web
hmeasure
The H-measure and other scalar classification performance metrics
Hmisc
Harrell Miscellaneous
HMM
HMM - Hidden Markov Models
HMMCont
Hidden Markov Model for Continuous Observations Processes
hmm.discnp
Hidden Markov Models with Discrete Non-Parametric Observation Distributions
hmmm
hierarchical multinomial marginal models
HMMpa
Analysing accelerometer data using hidden Markov models
HMP
Hypothesis Testing and Power Calculations for Comparing Metagenomic Samples from HMP
HMPTrees
Statistical Object Oriented Data Analysis of RDP-Based Taxonomic Trees from Human Microbiome Data
HMR
Flux Estimation with Static Chamber Data
hms
Pretty Time of Day
HMVD
Group Association Test using a Hidden Markov Model
hnp
Half-Normal Plots with Simulation Envelopes
hoa
Higher Order Likelihood Inference
hoardeR
Collect and Retrieve Annotation Data for Various Genomic Data Using Different Webservices
holdem
Texas Holdem simulator
Holidays
Holiday and Half-Day Data, for Use with the 'TimeWarp' Package
homals
Gifi Methods for Optimal Scaling
homeR
Useful Functions for Building Physics
Homeric
Doughnut Plots
homomorpheR
Homomorphic Computations in R
HomoPolymer
Theoretical Model to Simulate Radical Polymerization
homtest
Homogeneity tests for Regional Frequency Analysis
hopbyhop
Transmissions and Receptions in a Hop by Hop Network
horizon
Horizon Search Algorithm
hornpa
Horn's (1965) Test to Determine the Number of Components/Factors
horseshoe
Implementation of the Horseshoe Prior
hot.deck
Multiple Hot-Deck Imputation
HotDeckImputation
Hot Deck Imputation Methods for Missing Data
Hotelling
Hotelling's T-squared test and variants
hotspot
Software Hotspot Analysis
hotspots
Hot spots
housingData
U.S. Housing Data from 2008 to 2016
howmany
A lower bound for the number of correct rejections
HPbayes
Heligman Pollard mortality model parameter estimation using Bayesian Melding with Incremental Mixture Importance Sampling
hpcwld
High Performance Cluster Models Based on Kiefer-Wolfowitz Recursion
hpoPlot
Functions for Plotting HPO Terms
hqmisc
Miscellaneous convenience functions and dataset
hqreg
Regularization Paths for Lasso or Elastic-Net Penalized Huber Loss Regression and Quantile Regression
HRM
High-Dimensional Repeated Measures
hrr
Horizontal rule for the R language.
HSAR
Hierarchical Spatial Autoregressive Model (HSAR)
HSAUR
A Handbook of Statistical Analyses Using R (1st Edition)
HSAUR2
A Handbook of Statistical Analyses Using R (2nd Edition)
HSAUR3
A Handbook of Statistical Analyses Using R (3rd Edition)
hsdar
Manage, Analyse and Simulate Hyperspectral Data
hSDM
hierarchical Bayesian species distribution models
hsicCCA
Canonical Correlation Analysis based on Kernel Independence Measures
hsm
A Path-Based BCD for Proximal Function of Latent Group Lasso
hsmm
Hidden Semi Markov Models
hsphase
Phasing, Pedigree Reconstruction, Sire Imputation and Recombination Events Identification of Half-sib Families Using SNP Data
HSROC
Meta-Analysis of Diagnostic Test Accuracy when Reference Test is Imperfect
HSSVD
Biclustering with Heterogeneous Variance
htdp
Horizontal Time Dependent Positioning
htmltab
Assemble Data Frames from HTML Tables
htmlTable
Advanced Tables for Markdown/HTML
htmltidy
Tidy Up and Test XPath Queries on HTML and XML Content
htmltools
Tools for HTML
HTMLUtils
Facilitates Automated HTML Report Creation
htmlwidgets
HTML Widgets for R
hts
Hierarchical and Grouped Time Series
HTSCluster
Clustering High-Throughput Transcriptome Sequencing (HTS) Data
HTSSIP
High Throughput Sequencing of Stable Isotope Probing Data Analysis
httk
High-Throughput Toxicokinetics
httpcache
Query Cache for HTTP Clients
httpcode
'HTTP' Status Code Helper
httping
'Ping' 'URLs' to Time 'Requests'
httpRequest
Basic HTTP Request
httpuv
HTTP and WebSocket Server Library
httr
Tools for Working with URLs and HTTP
huge
High-Dimensional Undirected Graph Estimation
HUM
compute HUM value and visualize ROC curves
humanFormat
Human-friendly formatting functions
humaniformat
A Parser for Human Names
humarray
Simplify Analysis and Annotation of Human Microarray Datasets
humidity
An R Package for Calculating Water Vapor Measures from Temperature and Relative Humidity
hunspell
High-Performance Stemmer, Tokenizer, and Spell Checker for R
hwde
Models and Tests for Departure from Hardy-Weinberg Equilibrium and Independence Between Loci
HWEBayes
Bayesian investigation of Hardy-Weinberg Equilibrium via estimation and testing.
HWEintrinsic
Objective Bayesian Testing for the Hardy-Weinberg Equilibrium Problem
HW.pval
Testing Hardy-Weinberg Equilibrium for Multiallelic Genes
hwriter
HTML Writer - Outputs R objects in HTML format
hwriterPlus
hwriterPlus: Extending the hwriter Package
hwwntest
Tests of White Noise using Wavelets
HWxtest
Exact Tests for Hardy-Weinberg Proportions
hybridEnsemble
Build, Deploy and Evaluate Hybrid Ensembles
hybridHclust
Hybrid Hierarchical Clustering
HybridMC
Implementation of the Hybrid Monte Carlo and Multipoint Hybrid Monte Carlo sampling techniques
hybridModels
Stochastic Hybrid Models in Dynamic Networks
HydeNet
Hybrid Bayesian Networks Using R and JAGS
hydroApps
Tools and models for hydrological applications
hydrogeo
Groundwater Data Presentation and Interpretation
hydroGOF
Goodness-of-fit functions for comparison of simulated and observed hydrological time series
HydroMe
R codes for estimating water retention and infiltration model parameters using experimental data
hydroPSO
Particle Swarm Optimisation, with focus on Environmental Models
hydrostats
Hydrologic Indices for Daily Time Series Data
hydroTSM
Time series management, analysis and interpolation for hydrological modelling
hyfo
Hydrology and Climate Forecasting
HyperbolicDist
The hyperbolic distribution
hyperdirichlet
A generalization of the Dirichlet distribution
hyper.fit
Generic N-Dimensional Hyperplane Fitting with Heteroscedastic Covariant Errors and Intrinsic Scatter
hypergea
Hypergeometric Tests
hypergeo
The Gauss Hypergeometric Function
hyperSMURF
Hyper-Ensemble Smote Undersampled Random Forests
hyperSpec
Work with Hyperspectral Data, i.e. Spectra + Meta Information (Spatial, Time, Concentration, ...)
hypervolume
High-Dimensional Kernel Density Estimation and Geometry Operations
hyphenatr
Tools to Hyphenate Strings Using the 'Hunspell' Hyphenation Library
HyPhy
Macroevolutionary phylogentic analysis of species trees and gene trees
hypoparsr
Multi-Hypothesis CSV Parser
hypothesestest
Confidence Intervals and Tests of Statistical Hypotheses
hypothesisr
Wrapper for the 'Hypothes.is' Web Annotation Service
hysteresis
Tools for Modeling Rate-Dependent Hysteretic Processes and Ellipses
hzar
Hybrid Zone Analysis using R
IalsaSynthesis
Synthesizing Information Across Collaborating Research
IAPWS95
Thermophysical Properties of Water and Steam
IASD
Model Selection for Index of Asymmetry Distribution
IAT
Cleaning and Visualizing Implicit Association Test (IAT) Data
IATscores
Implicit Association Test Scores Using Robust Statistics
iBATCGH
Integrative Bayesian Analysis of Transcriptomic and CGH Data
ibd
INCOMPLETE BLOCK DESIGNS
IBDhaploRtools
Functions for the Analysis of IBD Haplo Output
IBDLabels
Convert Between Different IBD-State Labelling Schemes
ibdreg
Regression Methods for IBD Linkage With Covariates
IBDsim
Simulation of Chromosomal Regions Shared by Family Members
ibeemd
Irregular-lattice based ensemble empirical mode decomposition
ibelief
Belief Function Implementation
IBHM
Approximation using the IBHM method
ibm
Individual Based Models in R
ibmcraftr
Toolkits to Develop Individual-Based Models in Infectious Disease
ibmdbR
IBM in-Database Analytics for R
Iboot
Iboot: iterated bootstrap tests and confidence sets.
ibr
Iterative Bias Reduction
IBrokers
R API to Interactive Brokers Trader Workstation
iBUGS
An Interface to WinBUGS/OpenBUGS/JAGS by gWidgets
iC10
A Copy Number and Expression-Based Classifier for Breast Tumours
iC10TrainingData
Training datasets for iC10 package.
IC2
Inequality and Concentration Indices and Curves
ic50
Standardized high-throughput evaluation of cell-based compound screens
ica
Independent Component Analysis
ICAFF
Imperialist Competitive Algorithm
icamix
Estimation of ICA Mixture Models
icaOcularCorrection
Independent Components Analysis (ICA) based artifact correction.
ICAOD
Imperialist Competitive Algorithm for Optimal Designs
icapca
Mixed ICA/PCA
icarus
Calibrates and Reweights Units in Samples
ICBayes
Bayesian Semiparametric Models for Interval-Censored Data
ICC
Facilitating Estimation of the Intraclass Correlation Coefficient
iccbeta
Multilevel model intraclass correlation for slope heterogeneity
ICC.Sample.Size
Calculation of Sample Size and Power for ICC
icd
Tools for Working with ICD-9 and ICD-10 Codes, and Finding Comorbidities
icd9
Tools for Working with ICD-9 Codes, and Finding Comorbidities
icdGLM
EM by the Method of Weights for Incomplete Categorical Data in Generlized Linear Models
ICE
Iterated Conditional Expectation
ICEbox
Individual Conditional Expectation Plot Toolbox
ICEinfer
Incremental Cost-Effectiveness (ICE) Statistical Inference from Two Unbiased Samples
icenReg
Regression Models for Interval Censored Data
icensmis
Study Design and Data Analysis in the Presence of Error-Prone Diagnostic Tests and Self-Reported Outcomes
icesAdvice
Functions Related to ICES Advice
icesDatras
DATRAS Trawl Database Web Services
icesSAG
Stock Assessment Graphs Database Web Services
ICGE
Estimation of number of clusters and identification of atypical units
ICGOR
Fit Generalized Odds Rate Hazards Model with Interval Censored Data
ic.infer
Inequality constrained inference in linear normal situations
iClick
A Button-Based GUI for Financial and Economic Data Analysis
iCluster
Integrative clustering of multiple genomic data types
icpsrdata
Reproducible Data Retrieval from the ICPSR Archive
icRSF
A Modified Random Survival Forest Algorithm
ICS
Tools for Exploring Multivariate Data via ICS/ICA
ICSNP
Tools for Multivariate Nonparametrics
ICsurv
A package for semiparametric regression analysis of interval-censored data
icsw
Inverse Compliance Score Weighting
idbg
R debugger
idbr
R Interface to the US Census Bureau International Data Base API
idem
Inference in Randomized Controlled Trials with Death and Missingness
idendr0
Interactive Dendrograms
identity
Jacquard Condensed Coefficients of Identity
idm
Incremental Decomposition Methods
IDmining
Intrinsic Dimension for Data Mining
iDOS
Integrated Discovery of Oncogenic Signatures
IDPmisc
Utilities of Institute of Data Analyses and Process Design (www.idp.zhaw.ch)
IDPSurvival
Imprecise Dirichlet Process for Survival Analysis
idr
Irreproducible discovery rate
ids
Generate Random Identifiers
IDSpatialStats
Estimate Global Clustering in Infectious Disease
IDTurtle
Identify Turtles by their Plastral Biometries
iDynoR
R Analysis package for iDynoMiCS Simulation Results
ie2misc
Irucka Embry's Miscellaneous USGS Functions
ie2miscdata
Irucka Embry's Miscellaneous USGS Data Collection
ieeeround
Functions to set and get the IEEE rounding mode
iemisc
Irucka Embry's Miscellaneous Functions
iemiscdata
Irucka Embry's Miscellaneous Data Collection
iemisctext
Irucka Embry's Miscellaneous Text Collection
ifa
Independent Factor Analysis
iFad
An integrative factor analysis model for drug-pathway association inference
ifaTools
Toolkit for Item Factor Analysis with 'OpenMx'
ifctools
Italian Fiscal Code ('Codice Fiscale') Utilities
IFP
Identifying Functional Polymorphisms
ifs
Iterated Function Systems
ifultools
Insightful Research Tools
iGasso
Statistical Tests and Utilities for Genetic Association
IGM.MEA
IGM MEA Analysis
IgorR
Read Binary Files Saved by 'Igor Pro' (Including 'Neuromatic' Data)
igraph
Network Analysis and Visualization
igraphdata
A Collection of Network Data Sets for the 'igraph' Package
igraphinshiny
Use 'shiny' to Demo 'igraph'
igraphtosonia
Convert iGraph graps to SoNIA .son files
ig.vancouver.2014.topcolour
Instagram 2014 Vancouver Top Colour Dataset
ihs
Inverse Hyperbolic Sine Distribution
IHSEP
Inhomogeneous Self-Exciting Process
iki.dataclim
Consistency, Homogeneity and Summary Statistics of Climatological Data
iLaplace
Improved Laplace Approximation for Integrals of Unimodal Functions
ilc
Lee-Carter Mortality Models using Iterative Fitting Algorithms
ILS
Interlaboratory Study
IM
Orthogonal Moment Analysis
imageData
Aids in Processing and Plotting Data from a Lemna-Tec Scananalyzer
imager
Image Processing Library Based on 'CImg'
imagine
Imaging Engine, Tools for Application of Image Filters to Data Matrices
IMak
Item Maker
Imap
Interactive Mapping
IMFData
R Interface for International Monetary Fund(IMF) Data API
imfr
Download Data from the International Monetary Fund's Data API
imguR
An Imgur.com API Client Package
IMIS
Increamental Mixture Importance Sampling
immer
Item Response Models for Multiple Ratings
IMP
Interactive Model Performance Evaluation
imp4p
Imputation for Proteomics
IMPACT
The Impact of Items
ImpactIV
Identifying Causal Effect for Multi-Component Intervention Using Instrumental Variable Method
imPois
Imprecise Inferential Framework for Poisson Sampling Model
import
An Import Mechanism for R
ImportExport
Import and Export Data
imprProbEst
Minimum distance estimation in an imprecise probability model
imputeLCMD
A collection of methods for left-censored missing data imputation
imputeMDR
The Multifactor Dimensionality Reduction (MDR) Analysis for Incomplete Data
imputeMissings
Impute Missing Values in a Predictive Context
imputeMulti
Imputation Methods for Multivariate Multinomial Data
imputePSF
Impute Missing Data in Time Series Data with PSF Based Method
imputeTestbench
Test Bench for the Comparison of Imputation Methods
imputeTS
Time Series Missing Value Imputation
imputeYn
Imputing the Last Largest Censored Observation(s) Under Weighted Least Squares
in2extRemes
Into the extRemes Package
inarmix
Mixture models for longitudinal count data.
inbreedR
Analysing Inbreeding Based on Genetic Markers
inca
Integer Calibration
incidence
Compute, Handle, Plot and Model Incidence of Dated Events
inctools
Incidence Estimation Tools
IncucyteDRC
Dose Response Curves from Incucyte Proliferation Assays
indelmiss
Insertion Deletion Analysis While Accounting for Possible Missing Data
IndependenceTests
Nonparametric tests of independence between random vectors.
indicspecies
Relationship Between Species and Groups of Sites
IndTestPP
Tests of Independence Between Point Processes in Time
inegiR
Integrate INEGI’s (Mexican Stats Office) API with R
ineq
Measuring Inequality, Concentration, and Poverty
iNEXT
Interpolation and Extrapolation for Species Diversity
InfDim
Infine-dimensional model (IDM) to analyse phenotypic variation in growth trajectories.
inference
Functions to extract inferential values of a fitted model object
InferenceSMR
Inference about the standardized mortality ratio when evaluating the effect of a screening program on survival.
inferference
Methods for Causal Inference with Interference
inflection
Finds the Inflection Point of a Curve
influence.ME
Tools for Detecting Influential Data in Mixed Effects Models
influenceR
Software Tools to Quantify Structural Importance of Nodes in a Network
influence.SEM
Case Influence in Structural Equation Models
infoDecompuTE
Information Decomposition of Two-phase Experiments
Information
Data Exploration with Information Theory (Weight-of-Evidence and Information Value)
InformationValue
Performance Analysis and Companion Functions for Binary Classification Models
InformativeCensoring
Multiple Imputation for Informative Censoring
informR
Sequence Statistics for Relational Event Models
infotheo
Information-Theoretic Measures
infra
An Infrastructure Proxy Function
infraFDTD.assist
IO Help for infraFDTD Model
infuser
A Very Basic Templating Engine
Infusion
Inference Using Simulation
infutil
Information Utility
ini
Read and Write '.ini' Files
injectoR
R Dependency Injection
INLABMA
Bayesian Model Averaging with INLA
inline
Functions to Inline C, C++, Fortran Function Calls from R
inlinedocs
Convert inline comments to documentation
inlmisc
Miscellaneous Functions for the USGS INL Project Office
inpdfr
Analyse Text Documents Using Ecological Tools
InPosition
Inference Tests for ExPosition
insideRODE
insideRODE includes buildin functions with deSolve solver and C/FORTRAN interfaces to nlme, together with compiled codes.
InSilicoVA
Probabilistic Verbal Autopsy Coding with 'InSilicoVA' Algorithm
insol
Solar Radiation
InspectChangepoint
High-Dimensional Changepoint Estimation via Sparse Projection
INSPIRE
Inferring Shared Modules from Multiple Gene Expression Datasets with Partially Overlapping Gene Sets
install.load
Check, Install and Load CRAN & USGS GRAN Packages
installr
Using R to Install Stuff (Such As: R, 'Rtools', 'RStudio', 'Git', and More!)
instaR
Access to Instagram API via R
insuranceData
A Collection of Insurance Datasets Useful in Risk Classification in Non-life Insurance.
intamap
Procedures for Automated Interpolation
intamapInteractive
procedures for automated interpolation - methods only to be used interactively, not included in intamap package
IntClust
Integrated Data Analysis via Clustering
IntegrateBs
Integration for B-Spline
IntegratedJM
Joint Modelling of the Gene-Expression and Bioassay Data, Taking Care of the Effect Due to a Fingerprint Feature
IntegratedMRF
Integrated Prediction using Univariate and Multivariate Random Forests
Interact
Tests for marginal interactions in a 2 class response model
interactionTest
Calculates Critical Test Statistics to Control False Discovery and Familywise Error Rates in Marginal Effects Plots
InteractiveIGraph
interactive network analysis and visualization.
interAdapt
interAdapt
Interatrix
Compute Chi-Square Measures with Corrections
intercure
Cure Rate Estimators for Interval Censored Data
interferenceCI
Exact Confidence Intervals in the Presence of Interference
intergraph
Coercion Routines for Network Data Objects
internetarchive
An API Client for the Internet Archive
interplot
Plot the Effects of Variables in Interaction Terms
Interpol
Interpolation of amino acid sequences
Interpol.T
Hourly interpolation of multiple temperature daily series
InterpretMSSpectrum
Interpreting High Resolution GC-APCI-MS Spectra
interpretR
Binary Classifier and Regression Model Interpretation Functions
InterSIM
Simulation of Inter-Related Genomic Datasets
InterVA4
Replicate and Analyse 'InterVA4'
interval
Weighted Logrank Tests and NPMLE for interval censored data
intervals
Tools for Working with Points and Intervals
interventionalDBN
Interventional Inference for Dynamic Bayesian Networks
IntLik
Numerical Integration for Integrated Likelihood
IntNMF
Integrative Clustering of Multiple Genomic Dataset
intpoint
linear programming solver by the interior point method and graphically (two dimensions)
inTrees
Interpret Tree Ensembles
intReg
Interval Regression
intRegGOF
Integrated Regression Goodness of Fit
introgress
methods for analyzing introgression between divergent lineages
intsvy
International Assessment Data Manager
intubate
Interface to Popular R Functions for Data Science Pipelines
InvariantCausalPrediction
Invariant Causal Prediction
InventorymodelPackage
Inventorymodel
investr
Inverse Estimation/Calibration Functions
invgamma
The Inverse Gamma Distribution
invGauss
Threshold regression that fits the (randomized drift) inverse Gaussian distribution to survival data.
invLT
Inversion of Laplace-Transformed Functions
io
A Unified Framework for Input-Output Operations in R
ioncopy
Calling Copy Number Alterations in Amplicon Sequencing Data
ionflows
Calculate the Number of Required Flows for Semiconductor Sequencing
ionr
Test for Indifference of Indicator
iopsych
Methods for Industrial/Organizational Psychology
iosmooth
Functions for smoothing with infinite order flat-top kernels
iotools
I/O Tools for Streaming
ipdmeta
Tools for subgroup analyses with multiple trial data using aggregate statistics
ipdw
Spatial Interpolation by Inverse Path Distance Weighting
ipflasso
Integrative Lasso with Penalty Factors
ipfp
Fast Implementation of the Iterative Proportional Fitting Procedure in C
iplots
iPlots - interactive graphics for R
IPMpack
Builds and analyses Integral Projection Models (IPMs).
ipred
Improved Predictors
iprior
Linear Regression using I-Priors
ips
Interfaces to Phylogenetic Software in R
IPSUR
Introduction to Probability and Statistics Using R
IPtoCountry
Convert IP Addresses to Country Names or Full Location with Geoplotting
iptools
Manipulate, Validate and Resolve 'IP' Addresses
ipw
Estimate Inverse Probability Weights
IQCC
Improved Quality Control Charts
iqLearn
Interactive Q-Learning
iqspr
Generate Chemical Strings (SMILES) with the Inverse QSPR Model
irace
Iterated Racing for Automatic Algorithm Configuration
iRafNet
Integrative Random Forest for Gene Regulatory Network Inference
IRATER
A R Interface for the Instantaneous RATEs (IRATE) Model
IRdisplay
'Jupyter' Display Machinery
iRefR
iRefIndex Manager
iRegression
Regression Methods for Interval-Valued Variables
iRepro
Reproducibility for Interval-Censored Data
IrishDirectorates
Irish Companies' Boards from 2003 to 2013
IRISMustangMetrics
Statistics and Metrics for Seismic Data
IRISSeismic
Classes and Methods for Seismic Data Analysis
irlba
Fast Truncated SVD, PCA and Symmetric Eigendecomposition for Large Dense and Sparse Matrices
irr
Various Coefficients of Interrater Reliability and Agreement
irtDemo
Item Response Theory Demo Collection
irtoys
A Collection of Functions Related to Item Response Theory (IRT)
IRTpp
Estimating IRT Parameters using the IRT Methodology
irtProb
Utilities and Probability Distributions Related to Multidimensional Person Item Response Models
irtrees
Estimation of Tree-Based Item Response Models
IRTShiny
Item Response Theory via Shiny
isa2
The Iterative Signature Algorithm
ISBF
Iterative Selection of Blocks of Features - ISBF
isdals
Provides datasets for Introduction to Statistical Data Analysis for the Life Sciences
ISDA.R
interval symbolic data analysis for R
isdparser
Parse 'NOAA' Integrated Surface Data Files
IsingFit
Fitting Ising Models Using the ELasso Method
isingLenzMC
Monte Carlo for Classical Ising Model
IsingSampler
Sampling Methods and Distribution Functions for the Ising Model
island
Stochastic Island Biogeography Theory Made Easy
ISLR
Data for An Introduction to Statistical Learning with Applications in R
ismev
An Introduction to Statistical Modeling of Extreme Values
Iso
Functions to Perform Isotonic Regression
IsoCI
Confidence intervals for current status data based on transformations and bootstrap.
isocir
Isotonic Inference for Circular data
ISOcodes
Selected ISO Codes
IsoGene
Order-Restricted Inference for Microarray Experiments
isopam
Isopam (Clustering)
isopat
Calculation of isotopic pattern for a given molecular formula
isoph
Isotonic Proportional Hazards Model
IsoplotR
Statistical Toolbox for Radiometric Geochronology
ISOpureR
Deconvolution of Tumour Profiles
IsoriX
Isoscape Computation and Inference of Spatial Origins using Mixed Models
IsoSpecR
An R Interface to the IsoSpec Algorithm
isotone
Active Set and Generalized PAVA for Isotone Optimization
isotonic.pen
Penalized Isotonic Regression in one and two dimensions
IsotopeR
Stable Isotope Mixing Model
ISOweek
Week of the year and weekday according to ISO 8601
ISR3
Iterative Sequential Regression
isva
Independent Surrogate Variable Analysis
ISwR
Introductory Statistics with R
itcSegment
Individual Tree Crowns Segmentation
ITEMAN
Classical Item Analysis
iteRates
Parametric rate comparison
iterators
Provides Iterator Construct for R
iterLap
Approximate probability densities by iterated Laplace Approximations
iterpc
Efficient Iterator for Permutations and Combinations
itertools
Iterator Tools
itertools2
itertools2: Functions creating iterators for efficient looping
ITGM
Individual Tree Growth Modeling
itree
Tools for classification and regression trees, with an emphasis on interpretability.
its
Irregular Time Series
itsadug
Interpreting Time Series and Autocorrelated Data Using GAMMs
itsmr
Time series analysis package for students
IUPS
Incorporating Uncertainties in Propensity Scores
ivbma
Bayesian Instrumental Variable Estimation and Model Determination via Conditional Bayes Factors
ivfixed
Instrumental fixed effect panel data model
ivlewbel
Uses heteroscedasticity to estimate mismeasured and endogenous regressor models
ivmodel
Statistical Inference and Sensitivity Analysis for Instrumental Variables Model
ivpack
Instrumental Variable Estimation.
ivpanel
Instrumental Panel Data Models
ivprobit
Instrumental variables probit model
iWeigReg
Improved methods for causal inference and missing data problems
iWISA
Wavelet-Based Index of Storm Activity
jaatha
Simulation-Based Maximum Likelihood Parameter Estimation
jackknifeKME
Jackknife Estimates of Kaplan-Meier Estimators or Integrals
jackstraw
Statistical Inference of Variables Driving Systematic Variation
JacobiEigen
Classical Jacobi Eigensolution Algorithm
jacpop
Jaccard Index for Population Structure Identification
JADE
Blind Source Separation Methods Based on Joint Diagonalization and Some BSS Performance Criteria
jagsUI
A Wrapper Around 'rjags' to Streamline 'JAGS' Analyses
JAGUAR
Joint Analysis of Genotype and Group-Specific Variability Using a Novel Score Test Approach to Map Expression Quantitative Trait Loci (eQTL)
james.analysis
Analysis Tools for the 'JAMES' Framework
janeaustenr
Jane Austen's Complete Novels
janitor
Simple Tools for Examining and Cleaning Dirty Data
JASPAR
R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices.
JavaGD
Java Graphics Device
JBTools
Misc Small Tools and Helper Functions for Other Code of J. Buttlar
jetset
One-to-One Gene-Probeset Mapping for Affymetrix Human Microarrays
JGEE
Joint Generalized Estimating Equation Solver
JGL
Performs the Joint Graphical Lasso for sparse inverse covariance estimation on multiple classes
JGR
JGR - Java GUI for R
jiebaR
Chinese Text Segmentation
jiebaRD
Chinese Text Segmentation Data for jiebaR Package
JM
Joint Modeling of Longitudinal and Survival Data
JMbayes
Joint Modeling of Longitudinal and Time-to-Event Data under a Bayesian Approach
jmcm
Joint Mean-Covariance Models using 'Armadillo' and S4
JMdesign
Joint Modeling of Longitudinal and Survival Data - Power Calculation
jmetrik
Tools for Interacting with 'jMetrik'
Jmisc
Julian Miscellaneous Function
jmotif
Time Series Analysis Toolkit Based on Symbolic Aggregate Dicretization, i.e. SAX
jmuOutlier
Permutation Tests for Nonparametric Statistics
jocre
Joint Confidence Regions
Johnson
Johnson Transformation
JohnsonDistribution
Johnson Distribution
joineR
Joint modelling of repeated measurements and time-to-event data
joint.Cox
Penalized Likelihood Estimation and Dynamic Prediction under the Joint Frailty-Copula Models Between Tumour Progression and Death for Meta-Analysis
jointDiag
Joint Approximate Diagonalization of a set of square matrices
JointModel
Semiparametric Joint Models for Longitudinal and Counting Processes
jointNmix
Joint N-Mixture Models for Site-Associated Species
jointPm
Risk estimation using the joint probability method
JointRegBC
Joint Modelling of Mixed Correlated Binary and Continuous Responses : A Latent Variable Approach
joinXL
Perform Joins or Minus Queries on 'Excel' Files
jomo
Multilevel Joint Modelling Multiple Imputation
JOP
Joint Optimization Plot
JoSAE
Functions for some Unit-Level Small Area Estimators and their Variances
jose
Javascript Object Signing and Encryption
JOUSBoost
Implements Under/Oversampling for Probability Estimation
jpeg
Read and write JPEG images
JPEN
Covariance and Inverse Covariance Matrix Estimation Using Joint Penalty
jpmesh
Utilities for Japanese Mesh Code
jpndistrict
Create Japanese Administration Area and Office Maps
JPSurv
Methods for population-based cancer survival analysis
jqr
Client for 'jq', a JSON Processor
JRF
Joint Random Forest (JRF) for the Simultaneous Estimation of Multiple Related Networks
jrich
Jack-Knife Support for Evolutionary Distinctiveness Indices I and W
jrvFinance
Basic Finance; NPV/IRR/Annuities/Bond-Pricing; Black Scholes
js
Tools for Working with JavaScript in R
JSM
Semiparametric Joint Modeling of Survival and Longitudinal Data
jSonarR
jSonar Analytics Platform API for R
jsonlite
A Robust, High Performance JSON Parser and Generator for R
jsonvalidate
Validate 'JSON'
jtGWAS
Efficient Jonckheere-Terpstra Test Statistics
jtrans
Johnson Transformation for Normality
jug
A Simple Web Framework for R
Julia
Fractal Image Data Generator
junr
Access Open Data Through the Junar API
jvnVaR
Value at Risk
JWileymisc
Miscellaneous Utilities and Functions
jwutil
Tools for Data Manipulation and Testing
kamila
Methods for Clustering Mixed-Type Data
KANT
Package to identify and sort genes overexpressed
kantorovich
Kantorovich Distance Between Probability Measures
KappaGUI
GUI for Cohen's and Fleiss' Kappa
kappalab
Non-Additive Measure and Integral Manipulation Functions
kappaSize
Sample Size Estimation Functions for Studies of Interobserver Agreement
KappaV
Calculates "vectorial Kappa", an index of congruence between patchy mosaics.
kaps
K-Adaptive Partitioning for Survival data
karaoke
Remove Vocals from a Song
KATforDCEMRI
Kinetic analysis and visualization of DCE-MRI data.
kcirt
k-Cube Thurstonian IRT Models
kdecopula
Kernel Smoothing for Bivariate Copula Densities
kdetrees
Nonparametric method for identifying discordant phylogenetic trees
kedd
Kernel Estimator and Bandwidth Selection for Density and Its Derivatives
keep
Arrays with Better Control over Dimension Dropping
kehra
Collect, Assemble and Model Air Pollution, Weather and Health Data
kelvin
Calculate Solutions to the Kelvin Differential Equation using Bessel Functions
Kendall
Kendall rank correlation and Mann-Kendall trend test
kequate
The Kernel Method of Test Equating
kerdiest
Nonparametric kernel estimation of the distribution function. Bandwidth selection and estimation of related functions.
KERE
Expectile Regression in Reproducing Kernel Hilbert Space
kergp
Gaussian Process Laboratory
kernDeepStackNet
Kernel Deep Stacking Networks
kerndwd
Distance Weighted Discrimination (DWD) and Kernel Methods
kernelFactory
Kernel Factory: An Ensemble of Kernel Machines
Kernelheaping
Kernel Density Estimation for Heaped and Rounded Data
KernelKnn
Kernel k Nearest Neighbors
kernlab
Kernel-Based Machine Learning Lab
kernscr
Kernel Machine Score Test for Semi-Competing Risks
KernSmooth
Functions for Kernel Smoothing Supporting Wand & Jones (1995)
KernSmoothIRT
Nonparametric Item Response Theory
keyplayer
Locating Key Players in Social Networks
keypress
Wait for a Key Press in a Terminal
keyringr
Decrypt Passwords from Gnome Keyring and Windows Data Protection API
KFAS
Kalman Filter and Smoother for Exponential Family State Space Models
kfigr
Integrated Code Chunk Anchoring and Referencing for R Markdown Documents
KFKSDS
Kalman Filter, Smoother and Disturbance Smoother
kimisc
Kirill's Miscellaneous Functions
kin.cohort
Analysis of Kin-Cohort Studies
kineticF
Framework for the Analysis of Kinetic Visual Field Data
kinfit
Routines for Fitting Kinetic Models to Chemical Degradation Data
kinn
An Implementation of 'kinn' Algorithm, a Graph Based Regression Model
kinship2
Pedigree Functions
kissmig
a Keep It Simple Species Migration Model
kitagawa
Spectral response of water wells to harmonic strain and pressure
kknn
Weighted k-Nearest Neighbors
klaR
Classification and visualization
klausuR
Multiple Choice Test Evaluation
klin
Linear equations with Kronecker structure
kmc
Kaplan-Meier Estimator with Constraints for Right Censored Data -- a Recursive Computational Algorithm
km.ci
Confidence intervals for the Kaplan-Meier estimator
kmconfband
Kaplan-Meier Simultaneous Confidence Band for the Survivor Function
KMDA
Kernel-Based Metabolite Differential Analysis
kmeans.ddR
Distributed k-Means for Big Data using 'ddR' API
kmi
Kaplan-Meier multiple imputation for the analysis of cumulative incidence functions in the competing risks setting
Kmisc
Kevin Miscellaneous
kml
K-Means for Longitudinal Data
kml3d
K-Means for Joint Longitudinal Data
kmlcov
Clustering longitudinal data using the likelihood as a metric of distance
kmlShape
K-Means for Longitudinal Data using Shape-Respecting Distance
kmodR
K-Means with Simultaneous Outlier Detection
KMsurv
Data sets from Klein and Moeschberger (1997), Survival Analysis
KnapsackSampling
Generate Feasible Samples of a Knapsack Problem
knitcitations
Citations for 'Knitr' Markdown Files
knitLatex
'Knitr' Helpers - Mostly Tables
knitr
A General-Purpose Package for Dynamic Report Generation in R
knitrBootstrap
Knitr Bootstrap Framework
knncat
Nearest-neighbor Classification with Categorical Variables
knnGarden
Multi-distance based k-Nearest Neighbors
knnIndep
Independence tests and benchmarks
knockoff
Knockoff Filter for Controlling the False Discovery Rate
knotR
Knot Diagrams using Bezier Curves
kntnr
R Client for 'kintone' API
kobe
Tools for the provision of scientific fisheries management advice
KODAMA
Knowledge Discovery by Accuracy Maximization
kofnGA
A Genetic Algorithm for Fixed-Size Subset Selection
KOGMWU
Functional Summary and Meta-Analysis of Gene Expression Data
kohonen
Supervised and Unsupervised Self-Organising Maps
kokudosuuchi
R Interface to e-Stat API
kolmim
An Improved Evaluation of Kolmogorov's Distribution
KoNLP
Korean NLP Package
koRpus
An R Package for Text Analysis
KoulMde
Koul's Minimum Distance Estimation in Linear Regression and Autoregression Model by Coordinate Descent Algorithm
Kpart
Cubic Spline Fitting with Knot Selection
kpodclustr
Method for Clustering Partially Observed Data
kriens
Continuation Passing Style Development
kriging
Ordinary Kriging
KrigInv
Kriging-based Inversion for Deterministic and Noisy Computer Experiments
KRLS
Kernel-based Regularized Least squares (KRLS)
krm
Kernel Based Regression Models
ks
Kernel Smoothing
kSamples
K-Sample Rank Tests and their Combinations
KScorrect
Lilliefors-Corrected Kolmogorov-Smirnoff Goodness-of-Fit Tests
KSD
Goodness-of-Fit Tests using Kernelized Stein Discrepancy
kselection
Selection of K in K-Means Clustering
ksrlive
Identify Kinase Substrate Relationships Using Dynamic Data
kst
Knowledge Space Theory
ktsolve
Configurable function for solving families of nonlinear equations
ktspair
k-Top Scoring Pairs for Microarray Classification
kulife
Datasets and functions from the (now non-existing) Faculty of Life Sciences, University of Copenhagen
kwb.hantush
Calculation of Groundwater Mounding Beneath an Infiltration Basin
kyotil
Utility Functions by Youyi, Krisz and Others
kza
Kolmogorov-Zurbenko Adaptive Filters
kzfs
Multi-Scale Motions Separation with Kolmogorov-Zurbenko Periodogram Signals
kzft
Kolmogorov-Zurbenko Fourier Transform and Applications
kzs
Kolmogorov-Zurbenko Spatial Smoothing and Applications
l0ara
Sparse Generalized Linear Model with L0 Approximation for Feature Selection
L1pack
Routines for L1 Estimation
l2boost
l2boost - Friedman's boosting algorithm for regularized linear regression
labdsv
Ordination and Multivariate Analysis for Ecology
labeledLoop
Labeled Loop
labeling
Axis Labeling
labelled
Manipulating Labelled Data
labelrank
Predicting Rankings of Labels
label.switching
Relabelling MCMC Outputs of Mixture Models
labeltodendro
Convert labels or tables to a dendrogram
LabourMarketAreas
Identification, Tuning, Visualisation and Analysis of Labour Market Areas
labstatR
Libreria Del Laboratorio Di Statistica Con R
labstats
Data Sets for the Book "Experimental Design for Laboratory Biologists"
laeken
Estimation of indicators on social exclusion and poverty
laercio
Duncan test, Tukey test and Scott-Knott test.
LaF
Fast access to large ASCII files
laGP
Local Approximate Gaussian Process Regression
Lahman
Sean 'Lahman' Baseball Database
LakeMetabolizer
Tools for the Analysis of Ecosystem Metabolism
lakemorpho
Lake Morphometry Metrics in R
laketemps
Lake Temperatures Collected by Situ and Satellite Methods from 1985-2009
Lambda4
Collection of Internal Consistency Reliability Coefficients.
lambda.r
Modeling Data with Functional Programming
lambda.tools
Tools for Modeling Data with Functional Programming
LambertW
Probabilistic Models to Analyze and Gaussianize Heavy-Tailed, Skewed Data
lamW
Lambert-W Function
LANDD
Liquid Association for Network Dynamics Detection
landest
Landmark Estimation of Survival and Treatment Effect
landpred
Landmark Prediction of a Survival Outcome
landsat
Radiometric and topographic correction of satellite imagery
landsat8
Landsat 8 Imagery Rescaled to Reflectance, Radiance and/or Temperature
landscapeR
Categorical Landscape Simulation Facility
Langevin
Langevin Analysis in One and Two Dimensions
languageR
Data sets and functions with "Analyzing Linguistic Data: A practical introduction to statistics".
LaplaceDeconv
Laplace Deconvolution with Noisy Discrete Non-Equally Spaced Observations on a Finite Time Interval
LaplacesDemon
Complete Environment for Bayesian Inference
lar
History of labour relations package
LARF
Local Average Response Functions for Instrumental Variable Estimation of Treatment Effects
largeList
Serialization Interface for Large List Objects
largeVis
High-Quality Visualizations of Large, High-Dimensional Datasets
lars
Least Angle Regression, Lasso and Forward Stagewise
laser
Likelihood Analysis of Speciation/Extinction Rates from Phylogenies
lasso2
L1 constrained estimation aka `lasso'
LassoBacktracking
Modelling Interactions in High-Dimensional Data with Backtracking
lassoscore
High-Dimensional Inference with the Penalized Score Test
lassoshooting
L1 regularized regression (Lasso) solver using the Cyclic Coordinate Descent algorithm aka Lasso Shooting
lasvmR
A Simple Wrapper for the LASVM Solver
latdiag
Draws Diagrams Useful for Checking Latent Scales
latentnet
Latent Position and Cluster Models for Statistical Networks
LatentREGpp
Item Response Theory Implemented in R and Cpp
Laterality
Functions to Calculate Common Laterality Statistics in Primatology
latex2exp
Use LaTeX Expressions in Plots
lattice
Trellis Graphics for R
latticeDensity
Density estimation and nonparametric regression on irregular regions
latticeExtra
Extra Graphical Utilities Based on Lattice
LatticeKrig
Multiresolution Kriging Based on Markov Random Fields
lava
Latent Variable Models
lavaan
Latent Variable Analysis
lavaan.shiny
Latent Variable Analysis with Shiny
lavaan.survey
Complex Survey Structural Equation Modeling (SEM)
lava.tobit
LVM with censored and binary outcomes
lawn
Client for 'Turfjs' for 'Geospatial' Analysis
lawstat
Tools for Biostatistics, Public Policy, and Law
lazy
Lazy Learning for Local Regression
lazyData
A LazyData Facility
lazyeval
Lazy (Non-Standard) Evaluation
lazyrmd
Render R Markdown Outputs Lazily
lazysql
Lazy SQL Programming
lazyWeave
LaTeX Wrappers for R Users
lba
Latent Budget Analysis for Compositional Data
lbfgs
Limited-memory BFGS Optimization
lbfgsb3
Limited Memory BFGS Minimizer with Bounds on Parameters
lbiassurv
Length-biased correction to survival curve estimation.
LCA
Localised Co-Dependency Analysis
LCAextend
Latent Class Analysis (LCA) with familial dependence in extended pedigrees
lcda
Latent Class Discriminant Analysis
LCFdata
Data sets for package ``LMERConvenienceFunctions''
lclGWAS
Efficient Estimation of Discrete-Time Multivariate Frailty Model Using Exact Likelihood Function for Grouped Survival Data
LCMCR
Bayesian Nonparametric Latent-Class Capture-Recapture
lcmm
Extended Mixed Models Using Latent Classes and Latent Processes
lcopula
Liouville Copulas
lctools
Local Correlation, Spatial Inequalities, Geographically Weighted Regression and Other Tools
lda
Collapsed Gibbs Sampling Methods for Topic Models
ldamatch
Selection of Statistically Similar Research Groups
ldatuning
Tuning of the Latent Dirichlet Allocation Models Parameters
LDAvis
Interactive Visualization of Topic Models
ldbod
Local Density-Based Outlier Detection
ldbounds
Lan-DeMets Method for Group Sequential Boundaries
LDcorSV
Linkage disequilibrium corrected by the structure and the relatedness
LDheatmap
Graphical Display of Pairwise Linkage Disequilibria Between SNPs
ldlasso
LD LASSO Regression for SNP Association Study
LDOD
Finding Locally D-optimal optimal designs for some nonlinear and generalized linear models.
LDPD
Probability of Default Calibration
ldr
Methods for likelihood-based dimension reduction in regression
LDRTools
Tools for Linear Dimension Reduction
ldstatsHD
Linear Dependence Statistics for High-Dimensional Data
LDtests
Exact tests for Linkage Disequilibrium and Hardy-Weinberg Equilibrium
leaderCluster
Leader Clustering Algorithm
LeafAngle
Analysis and Visualization of Plant Leaf Angle Distributions
LeafArea
Rapid Digital Image Analysis of Leaf Area
leaflet
Create Interactive Web Maps with the JavaScript 'Leaflet' Library
leafletR
Interactive Web-Maps Based on the Leaflet JavaScript Library
LEANR
Finds "Local Subnetworks" Within an Interaction Network which Show Enrichment for Differentially Expressed Genes
LEAP
Constructing Gene Co-Expression Networks for Single-Cell RNA-Sequencing Data Using Pseudotime Ordering
LEAPFrOG
Likelihood Estimation of Admixture in Parents From Offspring Genotypes
leapp
latent effect adjustment after primary projection
leaps
regression subset selection
LearnBayes
Functions for Learning Bayesian Inference
learningCurve
An Implementation of Crawford's and Wright's Learning Curve Production Functions
learningr
Data and functions to accompany the book "Learning R".
learNN
Examples of Neural Networks
learnstats
An Interactive Environment for Learning Statistics
lefse
Phylogenetic and Functional Analyses for Ecology
leiv
Bivariate Linear Errors-In-Variables Estimation
LeLogicielR
Functions and datasets to accompany the book "Le logiciel R: Maitriser le langage, Effectuer des analyses statistiques" (french)
LendingClub
A Lending Club API Wrapper
lessR
Less Code, More Results
lestat
A package for LEarning STATistics
letsR
Tools for Data Handling and Analysis in Macroecology
lettercase
Utilities for Formatting Strings with Consistent Capitalization, Word Breaks and White Space
LexisPlotR
Plot Lexis Diagrams for Demographic Purposes
lexRankr
Extractive Summarization of Text with the LexRank Algorithm
lfactors
Factors with Levels
lfda
Local Fisher Discriminant Analysis
LFDR.MLE
Estimation of the Local False Discovery Rates by Type II Maximum Likelihood Estimation
lfe
Linear Group Fixed Effects
lfl
Linguistic Fuzzy Logic
lfstat
Calculation of Low Flow Statistics for Daily Stream Flow Data
lga
Tools for linear grouping analysis (LGA)
lgarch
Simulation and Estimation of Log-GARCH Models
lgcp
Log-Gaussian Cox Process
LGEWIS
Tests for Genetic Association/Gene-Environment Interaction in Longitudinal Gene-Environment-Wide Interaction Studies
LGRF
Set-Based Tests for Genetic Association in Longitudinal Studies
lgtdl
A set of methods for longitudinal data objects.
lhs
Latin Hypercube Samples
libamtrack
Computational Routines for Proton and Ion Radiotherapy
LiblineaR
Linear Predictive Models Based on the LIBLINEAR C/C++ Library
LiblineaR.ACF
Linear Classification with Online Adaptation of Coordinate Frequencies
Libra
Linearized Bregman Algorithms for Generalized Linear Models
LICORS
Light Cone Reconstruction of States - Predictive State Estimation From Spatio-Temporal Data
LICurvature
Sensitivity Analysis for Case Weight in Normal Linear Regression
lifecontingencies
Financial and Actuarial Mathematics for Life Contingencies
lifecourse
Quantification of Lifecourse Fluidity
LifeHist
Life History Models of Individuals
LifeTables
Two-Parameter HMD Model Life Table System
lift
Compute the Top Decile Lift and Plot the Lift Curve
liftLRD
Wavelet Lifting Estimators of the Hurst Exponent for Regularly and Irregularly Sampled Time Series
liftr
Dockerize R Markdown Documents
LightningR
Tools for Communication with Lightning-Viz Server
lightsout
Implementation of the 'Lights Out' Puzzle Game
LIHNPSD
Poisson Subordinated Distribution
likelihood
Methods for Maximum Likelihood Estimation
likelihoodAsy
Functions for Likelihood Asymptotics
likeLTD
Tools to Evaluate DNA Profile Evidence
likert
Functions to Analyze and Visualize Likert Type Items
LIM
Linear Inverse Model examples and solution methods.
limitplot
Jitter/CI Plot with Ordered Points Below the Limit of Detection
limSolve
Solving Linear Inverse Models
linbin
Binning and Plotting of Linearly Referenced Data
LinCal
Static Univariate Frequentist and Bayesian Linear Calibration
LindenmayeR
Functions to Explore L-Systems (Lindenmayer Systems)
LindleyR
The Lindley Distribution and Its Modifications
LinearizedSVR
Linearized Support Vector Regression
LinearRegressionMDE
Minimum Distance Estimation in Linear Regression Model
linear.tools
Manipulate Formulas and Evaluate Marginal Effects
linERR
Linear Excess Relative Risk Model
lineup
Lining Up Two Sets of Measurements
linkcomm
Tools for Generating, Visualizing, and Analysing Link Communities in Networks
LinkedMatrix
Column-Linked and Row-Linked Matrices
linkim
Linkage information based genotype imputation method
linkR
3D Lever and Linkage Mechanism Modeling
linLIR
linear Likelihood-based Imprecise Regression
linprog
Linear Programming / Optimization
LinRegInteractive
Interactive Interpretation of Linear Regression Models
LINselect
Selection of Linear Estimators
lintools
Manipulation of Linear Systems of (in)Equalities
lintr
Static R Code Analysis
liqueueR
Implements Queue, PriorityQueue and Stack Classes
lira
LInear Regression in Astronomy
liso
Fitting lasso penalised additive isotone models
lisp
List-processing à la SRFI-1
lisrelToR
Import output from LISREL into R
list
Statistical Methods for the Item Count Technique and List Experiment
listdtr
List-Based Rules for Dynamic Treatment Regimes
listenv
Environments Behaving (Almost) as Lists
LIStest
Tests of independence based on the Longest Increasing Subsequence
listless
Convert Lists to Tidy Data Frames
listviewer
'htmlwidget' for Interactive Views of R Lists
listWithDefaults
List with Defaults
littler
R at the Command-Line via 'r'
livechatR
R Wrapper for LiveChat REST API
ljr
Logistic Joinpoint Regression
llama
Leveraging Learning to Automatically Manage Algorithms
lle
Locally linear embedding
lllcrc
Local Log-linear Models for Capture-Recapture
LLSR
Data Analysis of Liquid-Liquid Systems
lm.beta
Add Standardized Regression Coefficients to lm-Objects
lm.br
Linear Model with Breakpoint
lme4
Linear Mixed-Effects Models using 'Eigen' and S4
lmec
Linear Mixed-Effects Models with Censored Responses
lmem.gwaser
Linear Mixed Effects Models for Genome-Wide Association Studies
lmem.qtler
Linear Mixed Effects Models for QTL Mapping for Multienvironment and Multitrait Analysis
lmeNB
Compute the Personalized Activity Index Based on a Negative Binomial Model
lmeNBBayes
Compute the Personalized Activity Index Based on a Flexible Bayesian Negative Binomial Model
lmenssp
Linear Mixed Effects Models with Non-Stationary Stochastic Processes
LMERConvenienceFunctions
Model Selection and Post-hoc Analysis for (G)LMER Models
lmeresampler
Bootstrap Methods for Nested Linear Mixed-Effects Models
lmerTest
Tests in Linear Mixed Effects Models
lmeSplines
Add smoothing spline modelling capability to nlme.
LMest
Latent Markov Models with and without Covariates
lmeVarComp
Testing for a subset of variance components in linear mixed models
lmf
Functions for estimation and inference of selection in age-structured populations
lmfor
Functions for Forest Biometrics
lmm
Linear Mixed Models
lmmlasso
Linear mixed-effects models with Lasso
lmmot
Multiple Ordinal Tobit (MOT) Model
lmms
Linear Mixed Effect Model Splines for Modelling and Analysis of Time Course Data
lmodel2
Model II Regression
lmom
L-moments
lmomco
L-Moments, Censored L-Moments, Trimmed L-Moments, L-Comoments, and Many Distributions
Lmoments
L-Moments and Quantile Mixtures
lmomRFA
Regional frequency analysis using L-moments
lmPerm
Permutation Tests for Linear Models
lmridge
Linear Ridge Regression with Ridge Penalty and Ridge Statistics
lmSupport
Support for Linear Models
lmtest
Testing Linear Regression Models
LncMod
Predicting Modulator and Functional/Survival Analysis
LncPath
Identifying the Pathways Regulated by LncRNA Sets of Interest
LncPriCNet
Prioritizing Candidate LncRNAs Based on a Composite Multi-Level Network
LNIRT
LogNormal Response Time Item Response Theory Models
loa
Lattice Options and Add-Ins
localdepth
Local Depth
localgauss
Estimating Local Gaussian Parameters
localsolver
R API to LocalSolver
locfdr
Computes Local False Discovery Rates
LocFDRPois
Functions for Performing Local FDR Estimation when Null and Alternative are Poisson
locfit
Local Regression, Likelihood and Density Estimation.
locits
Test of Stationarity and Localized Autocovariance
Lock5Data
Datasets for "Statistics: UnLocking the Power of Data"
Lock5withR
Datasets for 'Statistics: Unlocking the Power of Data'
locpol
Kernel local polynomial regression
lodGWAS
Genome-Wide Association Analysis of a Biomarker Accounting for Limit of Detection
loe
Local Ordinal Embedding
log4r
A simple logging system for R, based on log4j.
logbin
Relative Risk Regression Using the Log-Binomial Model
LogConcDEAD
Log-concave Density Estimation in Arbitrary Dimensions
logconcens
Maximum likelihood estimation of a log-concave density based on censored data
logcondens
Estimate a Log-Concave Probability Density from Iid Observations
logcondens.mode
Compute MLE of Log-Concave Density on R with Fixed Mode, and Perform Inference for the Mode.
logcondiscr
Estimate a Log-Concave Probability Mass Function from Discrete i.i.d. Observations
logconPH
CoxPH Model with Log Concave Baseline Distribution
logging
R logging package
LogicForest
Logic Forest
LOGICOIL
LOGICOIL: multi-state prediction of coiled-coil oligomeric state.
LogicOpt
Truth Table Logic Optimizer
LogicReg
Logic Regression
logistf
Firth's bias reduced logistic regression
LogisticDx
Diagnostic Tests for Models with a Binomial Response
logisticPCA
Binary Dimensionality Reduction
LOGIT
Functions, Data and Code for Binary and Binomial Data
logitchoice
Fitting l2-regularized logit choice models via generalized gradient descent
LogitNet
Infer network based on binary arrays using regularized logistic regression
logitnorm
Functions for the Logitnormal Distribution
loglognorm
Double log normal distribution functions
logmult
Log-Multiplicative Models, Including Association Models
LogrankA
Logrank Test for Aggregated Survival Data
logspline
Logspline Density Estimation Routines
lokern
Kernel Regression Smoothing with Local or Global Plug-in Bandwidth
lomb
Lomb-Scargle Periodogram
longCatEDA
Package for Plotting Categorical Longitudinal and Time-Series Data
longclust
Model-Based Clustering and Classification for Longitudinal Data
longitudinal
Analysis of Multiple Time Course Data
longitudinalData
Longitudinal Data
longmemo
Statistics for Long-Memory Processes (Jan Beran) -- Data and Functions
longpower
Sample Size Calculations for Longitudinal Data
longurl
Expand Short URLs Using the 'URL-Expander' API
loo
Efficient Leave-One-Out Cross-Validation and WAIC for Bayesian Models
lookupTable
Look-Up Tables using S4
loop
loop decomposition of weighted directed graphs for life cycle analysis, providing flexbile network plotting methods, and analyzing food chain properties in ecology
LoopAnalyst
A Collection of Tools to Conduct Levins' Loop Analysis
loopr
Uses an Archive to Amend Previous Stages of a Pipe using Current Output
lordif
Logistic Ordinal Regression Differential Item Functioning using IRT
lorec
LOw Rand and sparsE Covariance matrix estimation
LOST
Missing Morphometric Data Simulation and Estimation
LotkasLaw
Runs Lotka's Law which is One of the Special Applications of Zipf's Law
lowmemtkmeans
Low Memory Use Trimmed K-Means
LowRankQP
Low Rank Quadratic Programming
lpbrim
LP-BRIM Bipartite Modularity
lpc
Lassoed principal components for testing significance of features
LPCM
Local Principal Curve Methods
lpint
Local polynomial estimators of intensity function or its derivatives
LPM
Linear Parametric Models Applied to Hydrological Series
lpme
Local Polynomial Estimator in Measurement Error Models
LPmerge
Merging linkage maps by linear programming
lpmodeler
Modeler for linear programs (LP) and mixed integer linear programs (MILP)
LPR
Lasso and Partial Ridge
lpridge
Local Polynomial (Ridge) Regression
LPS
Linear Predictor Score, for Binary Inference from Multiple Continuous Variables
lpSolve
Interface to 'Lp_solve' v. 5.5 to Solve Linear/Integer Programs
lpSolveAPI
R Interface to 'lp_solve' Version 5.5.2.0
LPStimeSeries
Learned Pattern Similarity and Representation for Time Series
LPTime
LP Nonparametric Approach to Non-Gaussian Non-Linear Time Series Modelling
lqa
Penalized Likelihood Inference for GLMs
lqmm
Linear Quantile Mixed Models
lqr
Robust Linear Quantile Regression
LRcontrast
Dose Response Signal Detection under Model Uncertainty
lrequire
Sources an R "Module" with Caching & Encapsulation, Returning Exported Vars
lrgs
Linear Regression by Gibbs Sampling
lrmest
Different Types of Estimators to Deal with Multicollinearity
LRTH
A Likelihood Ratio Test Accounting for Genetic Heterogeneity
LS2W
Locally stationary two-dimensional wavelet process estimation scheme
LS2Wstat
A Multiscale Test of Spatial Stationarity for LS2W processes
lsa
Latent Semantic Analysis
LSAfun
Applied Latent Semantic Analysis (LSA) Functions
LSAmitR
Datensätze und Übungsmaterial zu 'Large-Scale Assessment mit R'
lsbclust
Least-Squares Bilinear Clustering for Three-Way Data
LSC
Local Statistical Complexity - Automatic Pattern Discovery in Spatio-Temporal Data
LSD
Lots of Superior Depictions
LSDinterface
Reading LSD Results (.res) Files
lsdv
Least square dummy variable regression
lsei
Solving Least Squares Problems under Equality/Inequality Constraints
lsgl
Linear Sparse Group Lasso
lshorth
The Length of the Shorth
lsl
Latent Structure Learning
lsmeans
Least-Squares Means
LSMonteCarlo
American options pricing with Least Squares Monte Carlo method
LSPFP
Lysate and Secretome Peptide Feature Plotter
lspls
LS-PLS Models
lsr
Companion to "Learning Statistics with R"
lss
the accelerated failure time model to right censored data based on least-squares principle
LSTS
Locally Stationary Time Series
ltbayes
Simulation-Based Bayesian Inference for Latent Traits of Item Response Models
ltm
Latent Trait Models under IRT
ltmle
Longitudinal Targeted Maximum Likelihood Estimation
LTPDvar
LTPD and AOQL Plans for Acceptance Sampling Inspection by Variables
LTR
Perform LTR analysis on microarray data
LTRCtrees
Survival Trees to Fit Left-Truncated and Right-Censored Survival Data
ltsa
Linear Time Series Analysis
ltsbase
Ridge and Liu Estimates based on LTS (Least Trimmed Squares) Method
ltsk
Local Time Space Kriging
lubridate
Make Dealing with Dates a Little Easier
luca
Likelihood inference from case-control data Under Covariate Assumptions (LUCA)
lucid
Printing Floating Point Numbers in a Human-Friendly Format
lucr
Currency Formatting and Conversion
lulcc
Land Use Change Modelling in R
lumendb
Lumen Database API Client
Luminescence
Comprehensive Luminescence Dating Data Analysis
lunar
Lunar Phase & Distance, Seasons and Other Environmental Factors
luzlogr
Lightweight Logging for R Scripts
lvm4net
Latent Variable Models for Networks
LVMMCOR
A Latent Variable Model for Mixed Continuous and Ordinal Responses
lvnet
Latent Variable Network Modeling
lvplot
Letter Value 'Boxplots'
LW1949
An Automated Approach to Evaluating Dose-Effect Experiments Following Litchfield and Wilcoxon (1949)
lxb
Fast LXB File Reader
lymphclon
Accurate Estimation of Clonal Coincidences and Abundances from Biological Replicates
M3
Reading M3 files
M4comp
Data from the M4 Time Series Forecasting Competition
m4fe
Models for Financial Economics
maboost
Binary and Multiclass Boosting Algorithms
MAc
Meta-Analysis with Correlations
macc
Mediation Analysis of Causality under Confounding
machina
Machina Time Series Generation and Backtesting
machQA
QA Machina Indicators
macleish
Retrieve Data from MacLeish Field Station
MAclinical
Class prediction based on microarray data and clinical parameters
MAd
Meta-Analysis with Mean Differences
mada
Meta-Analysis of Diagnostic Accuracy
maddison
Maddison Project Database
madness
Automatic Differentiation of Multivariate Operations
madr
Model Averaged Double Robust Estimation
mads
Multi-Analysis Distance Sampling
madsim
A Flexible Microarray Data Simulation Model
Maeswrap
Wrapper Functions for MAESTRA/MAESPA
mafs
Multiple Automatic Forecast Selection
magclass
Data Class and Tools for Handling Spatial-Temporal Data
magic
create and investigate magic squares
magicaxis
Pretty Scientific Plotting with Minor-Tick and Log Minor-Tick Support
magick
Advanced Image-Processing in R
MagneticMap
Magnetic Laplacian Matrix and Magnetic Eigenmap Visualization
magrittr
A Forward-Pipe Operator for R
maGUI
A Graphical User Interface for Microarray Data Analysis
mail
Sending Email Notifications from R
mailR
A Utility to Send Emails from R
MAINT.Data
Model and Analyse Interval Data
MakefileR
Create 'Makefiles' Using R
makeFlow
Visualizing Sequential Classifications
makeProject
Creates an empty package framework for the LCFD format
malani
Machine Learning Assisted Network Inference
MALDIquant
Quantitative Analysis of Mass Spectrometry Data
MALDIquantForeign
Import/Export Routines for MALDIquant
mallet
A wrapper around the Java machine learning tool MALLET
MAMA
Meta-Analysis of MicroArray
MAMS
Designing multi-arm multi-stage studies
MAMSE
Calculation of Minimum Averaged Mean Squared Error (MAMSE) weights.
managelocalrepo
Manage a CRAN-Style Local Repository
MANCIE
Matrix Analysis and Normalization by Concordant Information Enhancement
mangoTraining
Mango Solutions Training Datasets
manhattanly
Interactive Q-Q and Manhattan Plots Using 'plotly.js'
manifestoR
Access and Process Data and Documents of the Manifesto Project
ManifoldOptim
An R Interface to the ROPTLIB Library for Riemannian Manifold Optimization
manipulate
Interactive Plots for RStudio
ManlyMix
Manly Mixture Modeling and Model-Based Clustering
MANOVA.RM
Analysis of Multivariate Data and Repeated Measures Designs
ManyTests
Multiple Testing Procedures of Cox (2011) and Wong and Cox (2007)
Map2NCBI
Mapping Markers to the Nearest Genomic Feature
MAPA
Multiple Aggregation Prediction Algorithm
mapdata
Extra Map Databases
mapfit
A Tool for PH/MAP Parameter Estimation
MapGAM
Mapping Smoothed Effect Estimates from Individual-Level Data
MAPLES
Smoothed age profile estimation
mapmisc
Utilities for Producing Maps
mapplots
Data Visualisation on Maps
mapproj
Map Projections
mapr
Visualize Species Occurrence Data
maps
Draw Geographical Maps
mapStats
Geographic Display of Survey Data Statistics
maptools
Tools for Reading and Handling Spatial Objects
maptpx
MAP Estimation of Topic Models
maptree
Mapping, pruning, and graphing tree models
mapview
Interactive Viewing of Spatial Objects in R
mAr
Multivariate AutoRegressive analysis
MAR1
Multivariate Autoregressive Modeling for Analysis of Community Time-Series Data
mar1s
Multiplicative AR(1) with Seasonal Processes
march
Markov Chains
marelac
Tools for Aquatic Sciences
MareyMap
Estimation of Meiotic Recombination Rates Using Marey Maps
marg
Approximate marginal inference for regression-scale models
marima
Multivariate ARIMA and ARIMA-X Analysis
markdown
'Markdown' Rendering for R
marked
Mark-Recapture Analysis for Survival and Abundance Estimation
maRketSim
Market simulator for R
markmyassignment
Automatic Marking of R Assignments
markophylo
Markov Chain Models for Phylogenetic Trees
markovchain
Easy Handling Discrete Time Markov Chains
MarkowitzR
Statistical Significance of the Markowitz Portfolio
marl
Multivariate Analysis Based on Relative Likelihoods
marmap
Import, Plot and Analyze Bathymetric and Topographic Data
marqLevAlg
An algorithm for least-squares curve fitting
MARSS
Multivariate Autoregressive State-Space Modeling
maSAE
Mandallaz' Model-Assisted Small Area Estimators
mason
Build Data Structures for Common Statistical Analysis
MASS
Support Functions and Datasets for Venables and Ripley's MASS
MASSTIMATE
Body Mass Estimation Equations for Vertebrates
MasterBayes
ML and MCMC Methods for Pedigree Reconstruction and Analysis
MAT
Multidimensional Adaptive Testing
MATA
Model-Averaged Tail Area Wald (MATA-Wald) Confidence Interval
Matching
Multivariate and Propensity Score Matching with Balance Optimization
MatchingFrontier
Computation of the Balance - Sample Size Frontier in Matching Methods for Causal Inference
matchingMarkets
Analysis of Stable Matchings
matchingR
Matching Algorithms in R and C++
MatchIt
MatchIt: Nonparametric Preprocessing for Parametric Casual Inference
MatchItSE
Calculates SE for Matched Samples from 'MatchIt'
MatchLinReg
Combining Matching and Linear Regression for Causal Inference
matchMulti
Optimal Multilevel Matching using a Network Algorithm
matconv
A Code Converter from the Matlab/Octave Language to R
mateable
Tools to Assess Mating Potential in Space and Time
mathgraph
Directed and undirected graphs
matie
Measuring Association and Testing Independence Efficiently
matlab
MATLAB emulation package
matlabr
An Interface for MATLAB using System Calls
matlib
Matrix Functions for Teaching and Learning Linear Algebra and Multivariate Statistics
matpow
matrix powers
matR
Metagenomics Analysis Tools for R
Matrix
Sparse and Dense Matrix Classes and Methods
matrixcalc
Collection of functions for matrix calculations
MatrixCorrelation
Matrix Correlation Coefficients
MatrixEQTL
Matrix eQTL: Ultra fast eQTL analysis via large matrix operations
matrixLaplacian
Normalized Laplacian Matrix and Laplacian Map
MatrixLDA
Penalized Matrix-Normal Linear Discriminant Analysis
MatrixModels
Modelling with Sparse And Dense Matrices
matrixpls
Matrix-Based Partial Least Squares Estimation
matrixStats
Functions that Apply to Rows and Columns of Matrices (and to Vectors)
Matrix.utils
Data.frame-Like Operations on Sparse and Dense Matrix Objects
MATTOOLS
Modern Calibration Functions for the Modern Analog Technique (MAT)
MAVIS
Meta Analysis via Shiny
MAVTgsa
Three methods to identify differentially expressed gene sets, ordinary least square test, Multivariate Analysis Of Variance test with n contrasts and Random forest.
MaXact
Exact max-type Cochran-Armitage trend test(CATT)
maxent
Low-memory Multinomial Logistic Regression with Support for Text Classification
MaxentVariableSelection
Selecting the Best Set of Relevant Environmental Variables along with the Optimal Regularization Multiplier for Maxent Niche Modeling
maxLik
Maximum Likelihood Estimation and Related Tools
maxlike
Model species distributions by estimating the probability of occurrence using presence-only data.
maxnet
Fitting 'Maxent' Species Distribution Models with 'glmnet'
MaxPro
Maximum Projection Designs
MaxSkew
Orthogonal Data Projections with Maximal Skewness
maxstat
Maximally Selected Rank Statistics
MazamaSpatialUtils
Mazama Science Spatial Data Download and Utility Functions
MBA
Multilevel B-spline Approximation
mbbefd
Maxwell Boltzmann Bose Einstein Fermi Dirac Distribution and Destruction Rate Modelling
MBC
Multivariate Bias Correction of Climate Model Outputs
MBCluster.Seq
Model-Based Clustering for RNA-seq Data
mbclusterwise
Clusterwise Multiblock Analyses
MBESS
The MBESS R Package
mbest
Moment-Based Estimation for Hierarchical Models
MBHdesign
Spatial Designs for Ecological and Environmental Surveys
MBI
(M)ultiple-site (B)iodiversity (I)ndices Calculator
mblm
Median-Based Linear Models
MBmca
Nucleic Acid Melting Curve Analysis on Microbead Surfaces with R
mbmdr
Model Based Multifactor Dimensionality Reduction
mboost
Model-Based Boosting
MBSGS
Multivariate Bayesian Sparse Group Selection with Spike and Slab
MBTAr
Access Data from the Massachusetts Bay Transit Authority (MBTA) Web API
mBvs
Multivariate Bayesian Variable Selection Method Exploiting Dependence among Outcomes
mc2d
Tools for Two-Dimensional Monte-Carlo Simulations
MC2toPath
Translates information from netcdf files with MC2 output into inter-PVT transitions.
MCAPS
MCAPS data and results
MCAvariants
Multiple Correspondence Analysis Variants
mcbiopi
Matrix Computation Based Identification Of Prime Implicants
mcc
Moment Corrected Correlation
mcclust
Process an MCMC Sample of Clusterings
MCDA
Functions to Support the Multicriteria Decision Aiding Process
MCDM
Multi-Criteria Decision Making Methods for Crisp Data
mcemGLM
Maximum Likelihood Estimation for Generalized Linear Mixed Models
mcga
Machine Coded Genetic Algorithms for Real-Valued Optimization Problems
mcgfa
Mixtures of Contaminated Gaussian Factor Analyzers
mcgibbsit
Warnes and Raftery's MCGibbsit MCMC diagnostic
mcglm
Multivariate Covariance Generalized Linear Models
mcGlobaloptim
Global optimization using Monte Carlo and Quasi Monte Carlo simulation
mcheatmaps
Multiple matrices heatmap visualization
MChtest
Monte Carlo hypothesis tests with Sequential Stopping
MCI
Multiplicative Competitive Interaction (MCI) Model
mcIRT
IRT models for multiple choice items (mcIRT)
MCL
Markov Cluster Algorithm
mclcar
Estimating Conditional Auto-Regressive (CAR) Models using Monte Carlo Likelihood Methods
mcll
Monte Carlo Local Likelihood Estimation
mclogit
Mixed Conditional Logit
mclust
Gaussian Mixture Modelling for Model-Based Clustering, Classification, and Density Estimation
mcmc
Markov Chain Monte Carlo
MCMC4Extremes
Posterior Distribution of Extreme Value Models in R
MCMCglmm
MCMC Generalised Linear Mixed Models
MCMC.OTU
Bayesian Analysis of Multivariate Counts Data in DNA Metabarcoding and Ecology
MCMCpack
Markov Chain Monte Carlo (MCMC) Package
mcmcplots
Create Plots from MCMC Output
MCMC.qpcr
Bayesian Analysis of qRT-PCR Data
mcmcse
Monte Carlo Standard Errors for MCMC
MCMCvis
Tools to Visualize, Manipulate, and Summarize MCMC Output
mco
Multiple Criteria Optimization Algorithms and Related Functions
Mcomp
Data from the M-competitions
MConjoint
Conjoint Analysis through Averaging of Multiple Analyses
mcPAFit
Estimating Preferential Attachment from a Single Network Snapshot by Markov Chain Monte Carlo
MCPAN
Multiple Comparisons Using Normal Approximation
mcparallelDo
A Simplified Interface for Running Commands on Parallel Processes
MCPerm
A Monte Carlo permutation method for multiple test correlation
MCPMod
Design and Analysis of Dose-Finding Studies
mcprofile
Testing Generalized Linear Hypotheses for Generalized Linear Model Parameters by Profile Deviance
mcr
Method Comparison Regression
MCS
Model Confidence Set Procedure
mcsm
Functions for Monte Carlo Methods with R
McSpatial
Nonparametric spatial data analysis
mctest
Multicollinearity Diagnostic Measures
MCTM
Markov Chains Transition Matrices
md
Selecting Bandwidth for Kernel Density Estimator with Minimum Distance Method
mda
Mixture and Flexible Discriminant Analysis
mdatools
Multivariate Data Analysis for Chemometrics
mded
Measuring the Difference Between Two Empirical Distributions
mdhglm
Multivariate Double Hierarchical Generalized Linear Models
MDimNormn
Multi-Dimensional MA Normalization for Plate Effect
MDM
Multinomial Diversity Model
MDMR
Multivariate Distance Matrix Regression
mdpeer
Graph-Constrained Regression with Enhanced Regularization Parameters Selection
MDplot
Visualising Molecular Dynamics Analyses
MDPtoolbox
Markov Decision Processes toolbox
MDR
Detect gene-gene interactions using multifactor dimensionality reduction
mdscore
Improved Score Tests for Generalized Linear Models
mdsdt
Functions for Analysis of Data with General Recognition Theory
MDSGUI
A GUI for interactive MDS in R
mdsr
Complement to 'Modern Data Science with R'
MeanShift
Clustering via the Mean Shift Algorithm
meanShiftR
A Computationally Efficient Mean Shift Implementation
measurements
Tools for Units of Measurement
measuRing
Detection and Control of Tree-Ring Widths on Scanned Image Sections
meboot
Maximum Entropy Bootstrap for Time Series
MEclustnet
Fits the Mixture of Experts Latent Position Cluster Model to Network Data
mederrRank
Bayesian Methods for Identifying the Most Harmful Medication Errors
medfate
Mediterranean Forest Simulation
medflex
Flexible Mediation Analysis Using Natural Effect Models
MediaK
Calculate MeDiA_K Distance
Mediana
Clinical Trial Simulations
mediation
Causal Mediation Analysis
medicalrisk
Medical Risk and Comorbidity Tools for ICD-9-CM Data
medicare
Tools for Obtaining and Cleaning Medicare Public Use Files
MedOr
Median Ordering Statistical R package
medSTC
A max-margin supervised Sparse Topical Coding Model
MEET
MEET: Motif Elements Estimation Toolkit
mefa
Multivariate Data Handling in Ecology and Biogeography
mefa4
Multivariate Data Handling with S4 Classes and Sparse Matrices
megaptera
MEGAPhylogeny Techniques in R
MEGENA
Multiscale Clustering of Geometrical Network
meifly
Interactive model exploration using GGobi
mem
Moving Epidemic Method R Package.
memgene
Spatial pattern detection in genetic distance data using Moran's Eigenvector Maps
memisc
Tools for Management of Survey Data and the Presentation of Analysis Results
memo
In-Memory Caching for Repeated Computations
memoise
Memoisation of Functions
MEMSS
Data sets from Mixed-effects Models in S
memuse
Memory Estimation Utilities
MendelianRandomization
Mendelian Randomization Package
MenuCollection
Collection of Configurable GTK+ Menus
MergeGUI
A GUI for Merging Datasets in R
merror
Accuracy and Precision of Measurements
merTools
Tools for Analyzing Mixed Effect Regression Models
MESS
Miscellaneous Esoteric Statistical Scripts
meta
General Package for Meta-Analysis
meta4diag
Meta-Analysis for Diagnostic Test Studies
MetaAnalyser
An Interactive Visualisation of Meta-Analysis as a Physical Weighing Machine
MetABEL
Meta-analysis of genome-wide SNP association results
MetabolAnalyze
Probabilistic latent variable models for metabolomic data.
metabolomics
Analysis of Metabolomics Data
MetaboQC
Normalize Metabolomic Data using QC Signal
metacoder
Tools for Parsing, Manipulating, and Graphing Hierarchical Data
metacom
Analysis of the 'Elements of Metacommunity Structure'
metacor
Meta-analysis of correlation coefficients
MetaCycle
Evaluate Periodicity in Large Scale Data
MetaDE
MetaDE: Microarray meta-analysis for differentially expressed gene detection
metafolio
Metapopulation simulations for conserving salmon through portfolio optimization
metafor
Meta-Analysis Package for R
metafuse
Fused Lasso Approach in Regression Coefficient Clustering
metagear
Comprehensive Research Synthesis Tools for Systematic Reviews and Meta-Analysis
metagen
Inference in Meta Analysis and Meta Regression
metaheur
Metaheuristic Optimization Framework for Preprocessing Combinations
MetaheuristicFPA
An Implementation of Flower Pollination Algorithm in R
MetaIntegrator
Meta-Analysis of Gene Expression Data
MetaLandSim
Landscape and Range Expansion Simulation
metaLik
Likelihood Inference in Meta-Analysis and Meta-Regression Models
metaMA
Meta-analysis for MicroArrays
metamisc
Diagnostic and prognostic meta analysis (metamisc)
metaMix
Bayesian Mixture Analysis for Metagenomic Community Profiling
metansue
Meta-Analysis of Studies with Non Statistically-Significant Unreported Effects
metap
Meta-Analysis of Significance Values
MetaPath
Perform the Meta-Analysis for Pathway Enrichment Analysis (MAPE)
MetaPCA
MetaPCA: Meta-analysis in the Dimension Reduction of Genomic data
metaplotr
Creates CrossHairs Plots for Meta-Analyses
metaplus
Robust Meta-Analysis and Meta-Regression
MetaQC
MetaQC: Objective Quality Control and Inclusion/Exclusion Criteria for Genomic Meta-Analysis
metaRNASeq
Meta-analysis of RNA-seq data
metaSEM
Meta-Analysis using Structural Equation Modeling
metasens
Advanced Statistical Methods to Model and Adjust for Bias in Meta-Analysis
MetaSKAT
Meta Analysis for SNP-Set (Sequence) Kernel Association Test
metatest
Fit and test metaregression models
Metatron
Meta-analysis for Classification Data and Correction to Imperfect Reference
meteo
Spatio-Temporal Analysis and Mapping of Meteorological Observations
meteoForecast
Numerical Weather Predictions
meteogRam
Tools for plotting meteograms
meteoland
Landscape Meteorology Tools
meteR
Fitting and Plotting Tools for the Maximum Entropy Theory of Ecology (METE)
MetFns
Analysis of Visual Meteor Data
Meth27QC
Meth27QC: sample quality analysis, and sample control analysis
MethComp
Functions for Analysis of Agreement in Method Comparison Studies
MethodCompare
Bias and Precision Plots to Compare Two Measurements with Possibly Heteroscedastic Measurement Errors
Methplot
Visualize the methylation patterns
MethyBayes
Full Bayesian Partition Model for Identifying Differentially Methylated Loci
MethylCapSig
Detection of Differentially Methylated Regions using MethylCap-Seq Data
MetNorm
Statistical Methods for Normalizing Metabolomics Data
MetProc
Separate Metabolites into Likely Measurement Artifacts and True Metabolites
Metrics
Evaluation metrics for machine learning
metricsgraphics
Create Interactive Charts with the JavaScript 'MetricsGraphics' Library
metricTester
Test Metric and Null Model Statistical Performance
metRology
Support for Metrological Applications
mets
Analysis of Multivariate Event Times
MetSizeR
GUI Tool for Estimating Sample Sizes for Metabolomic Experiments
MetStaT
Statistical metabolomics tools
mev
Multivariate Extreme Value Distributions
mewAvg
A Fixed Memeory Moving Expanding Window Average
mexhaz
Mixed Effect Excess Hazard Models
MExPosition
Multi-table ExPosition
MF
Mitigated Fraction
MFAg
Multiple Factor Analysis (MFA)
MFHD
Multivariate Functional Halfspace Depth
mFilter
Miscellaneous time series filters
mfp
Multivariable Fractional Polynomials
MFPCA
Multivariate Functional Principal Component Analysis for Data Observed on Different Dimensional Domains
MfUSampler
Multivariate-from-Univariate (MfU) MCMC Sampler
mfx
Marginal Effects, Odds Ratios and Incidence Rate Ratios for GLMs
mgarchBEKK
Simulating, Estimating and Diagnosing MGARCH (BEKK and mGJR) Processes
mgcv
Mixed GAM Computation Vehicle with GCV/AIC/REML Smoothness Estimation
MGGM
Structural Pursuit Over Multiple Undirected Graphs
MGL
Module Graphical Lasso
MGLM
Multivariate Response Generalized Linear Models
mglmn
Model Averaging for Multivariate GLM with Null Models
mgm
Estimating Time-Varying Mixed Graphical Models
mgpd
mgpd: Functions for multivariate generalized Pareto distribution (MGPD of Type II)
mgraph
Graphing map attributes and non-map variables in R
MGRASTer
API Client for the MG-RAST Server of the US DOE KBase
MGSDA
Multi-Group Sparse Discriminant Analysis
mGSZ
Gene set analysis based on GSZ-scoring function and asymptotic p-value
MHadaptive
General Markov Chain Monte Carlo for Bayesian Inference using adaptive Metropolis-Hastings sampling
mhde
Minimum Hellinger Distance Test for Normality
mHG
Minimum-Hypergeometric Test
mhsmm
Inference for Hidden Markov and Semi-Markov Models
mht
Multiple Hypothesis Testing for Variable Selection in High-Dimensional Linear Models
mhtboot
Multiple Hypothesis Test Based on Distribution of p Values
MHTdiscrete
Multiple Hypotheses Testing for Discrete Data
MHTrajectoryR
Bayesian Model Selection in Logistic Regression for the Detection of Adverse Drug Reactions
mhurdle
Multiple Hurdle Tobit Models
mi
Missing Data Imputation and Model Checking
MIAmaxent
Maxent Distribution Model Selection
mice
Multivariate Imputation by Chained Equations
miceadds
Some Additional Multiple Imputation Functions, Especially for 'mice'
micEcon
Microeconomic Analysis and Modelling
micEconAids
Demand Analysis with the Almost Ideal Demand System (AIDS)
micEconCES
Analysis with the Constant Elasticity of Substitution (CES) function
micEconSNQP
Symmetric Normalized Quadratic Profit Function
micompr
Multivariate Independent Comparison of Observations
miCoPTCM
Promotion Time Cure Model with Mis-Measured Covariates
microbats
An Implementation of Bat Algorithm in R
microbenchmark
Accurate Timing Functions
microclass
Methods for Taxonomic Classification of Prokaryotes
microcontax
The ConTax Data Package
MicroDatosEs
Utilities for Official Spanish Microdata
micromap
Linked Micromap Plots
micromapST
Linked Micromap Plots for U. S. States
micropan
Microbial Pan-genome Analysis
microplot
Use R Graphics Files as Microplots (Sparklines) in Tables in LaTeX or HTML Files, and Output Data.frames to Org-Mode
microseq
Basic Biological Sequence Analysis
MicroStrategyR
MicroStrategyR Package
MicSim
Performing Continuous-Time Microsimulation
midasr
Mixed Data Sampling Regression
midastouch
Multiple Imputation by Distance Aided Donor Selection
MIDN
Nearly Exact Sample Size Calculation for Exact Powerful Nonrandomized Tests for Differences Between Binomial Proportions
midrangeMCP
Multiple Comparisons Procedures Based on Studentized Midrange and Range Distributions
MigClim
Implementing dispersal into species distribution models
migest
Methods for the Indirect Estimation of Bilateral Migration
migration.indices
Migration indices
migui
Graphical User Interface to the 'mi' Package
MIICD
Multiple Imputation for Interval Censored Data
MIIVsem
Model Implied Instrumental Variable (MIIV) Estimation of Structural Equation Models
MILC
MIcrosimulation Lung Cancer (MILC) model
milonga
Multiple Imputation for Multivariate Binary Outcome
milr
Multiple-Instance Logistic Regression with LASSO Penalty
mime
Map Filenames to MIME Types
MImix
Mixture summary method for multiple imputation
MindOnStats
Data sets included in Utts and Heckard's Mind on Statistics
minerva
Maximal Information-Based Nonparametric Exploration R Package for Variable Analysis
Miney
Implementation of the Well-Known Game to Clear Bombs from a Given Field (Matrix)
miniCRAN
Create a Mini Version of CRAN Containing Only Selected Packages
miniGUI
tktcl quick and simple function GUI.
minimap
Create Tile Grid Maps
minimax
Minimax distribution family
minimaxdesign
Minimax and Minimax Projection Designs
minimist
Parse Argument Options
miniUI
Shiny UI Widgets for Small Screens
minpack.lm
R Interface to the Levenberg-Marquardt Nonlinear Least-Squares Algorithm Found in MINPACK, Plus Support for Bounds
minPtest
Gene region-level testing procedure for SNP data, using the min P test resampling approach
minqa
Derivative-free optimization algorithms by quadratic approximation
minque
An R Package for Linear Mixed Model Analyses
MInt
Learn Direct Interaction Networks
minval
MINimal VALidation for Stoichiometric Reactions
minxent
Entropy Optimization Distributions
mipfp
Multidimensional Iterative Proportional Fitting and Alternative Models
MIPHENO
Mutant Identification through Probabilistic High throughput Enabled NOrmalization
miRada
MicroRNA Microarray Data Analysis
MiRAnorm
Adaptive Normalization for miRNA Data
MiRSEA
'MicroRNA' Set Enrichment Analysis
mirt
Multidimensional Item Response Theory
mirtCAT
Computerized Adaptive Testing with Multidimensional Item Response Theory
miRtest
combined miRNA- and mRNA-testing
misc3d
Miscellaneous 3D Plots
miscF
Miscellaneous Functions
miscFuncs
Miscellaneous Useful Functions Including LaTeX Tables, Kalman Filtering and Development Tools
misclassGLM
Computation of Generalized Linear Models with Misclassified Covariates Using Side Information
miscor
Miscellaneous Functions for the Correlation Coefficient
miscset
Miscellaneous Tools Set
miscTools
Miscellaneous Tools and Utilities
mise
Clears the Workspace (Mise en Place)
MiSPU
Microbiome Based Sum of Powered Score (MiSPU) Tests
missDeaths
'Correctly Analyse Disease Recurrence with Missing at Risk Information using Population Mortality'
missForest
Nonparametric Missing Value Imputation using Random Forest
MissingDataGUI
A GUI for Missing Data Exploration
missMDA
Handling Missing Values with Multivariate Data Analysis
MissMech
Testing Homoscedasticity, Multivariate Normality, and Missing Completely at Random
MiST
Mixed effects Score Test for continuous outcomes
mistat
Data Sets, Functions and Examples from the Book: "Modern Industrial Statistics" by Kenett, Zacks and Amberti
mistral
Methods in Structural Reliability Analysis
MitISEM
Mixture of Student t Distributions using Importance Sampling and Expectation Maximization
mitml
Tools for Multiple Imputation in Multilevel Modeling
mitools
Tools for multiple imputation of missing data
mix
Estimation/Multiple Imputation for Mixed Categorical and Continuous Data
mixAK
Multivariate Normal Mixture Models and Mixtures of Generalized Linear Mixed Models Including Model Based Clustering
MixAll
Clustering using Mixture Models
mixcat
Mixed effects cumulative link and logistic regression models
mixdist
Finite Mixture Distribution Models
MixedDataImpute
Missing Data Imputation for Continuous and Categorical Data using Nonparametric Bayesian Joint Models
mixedMem
Tools for Discrete Multivariate Mixed Membership Models
MixedPoisson
Mixed Poisson Models
mixedsde
Estimation Methods for Stochastic Differential Mixed Effects Models
MixedTS
Mixed Tempered Stable Distribution
mixer
Random graph clustering
mixexp
Design and Analysis of Mixture Experiments
MIXFIM
Evaluation of the FIM in NLMEMs using MCMC
MixGHD
Model Based Clustering, Classification and Discriminant Analysis Using the Mixture of Generalized Hyperbolic Distributions
mixlm
Mixed Model ANOVA and Statistics for Education
MixMAP
Implements the MixMAP Algorithm
mixOmics
Omics Data Integration Project
mixor
Mixed-Effects Ordinal Regression Analysis
mixpack
Tools to Work with Mixture Components
mixPHM
Mixtures of Proportional Hazard Models
mixRasch
Mixture Rasch Models with JMLE
mixreg
Functions to fit mixtures of regressions.
MixRF
A Random-Forest-Based Approach for Imputing Clustered Incomplete Data
mixsep
Forensic Genetics DNA Mixture Separation
MixSIAR
Bayesian Mixing Models in R
MixSim
Simulating Data to Study Performance of Clustering Algorithms
mixsmsn
Fitting Finite Mixture of Scale Mixture of Skew-Normal Distributions
mixtNB
DE Analysis of RNA-Seq Data by Mixtures of NB
mixtools
Tools for Analyzing Finite Mixture Models
mixtox
Curve Fitting and Mixture Toxicity Assessment
mixture
Mixture Models for Clustering and Classification
MixtureInf
Inference for Finite Mixture Models
mizer
Multi-species sIZE spectrum modelling in R
mkde
2D and 3D movement-based kernel density estimates (MKDEs).
mkin
Kinetic Evaluation of Chemical Degradation Data
MKLE
Maximum kernel likelihood estimation.
MKmisc
Miscellaneous Functions from M. Kohl
mkssd
Efficient multi-level k-circulant supersaturated designs
mlbench
Machine Learning Benchmark Problems
MLCIRTwithin
Latent Class Item Response Theory (LC-IRT) Models under Within-Item Multidimensionality
MLCM
Maximum Likelihood Conjoint Measurement
mlDNA
Machine Learning-based Differential Network Analysis of Transcriptome Data
mldr
Exploratory Data Analysis and Manipulation of Multi-Label Data Sets
mldr.datasets
R Ultimate Multilabel Dataset Repository
MLDS
Maximum Likelihood Difference Scaling
mlearning
Machine learning algorithms with unified interface and confusion matrices
MLEcens
Computation of the MLE for bivariate (interval) censored data
mlegp
Maximum Likelihood Estimates of Gaussian Processes
mleur
Maximum likelihood unit root test
mlgt
Multi-Locus Geno-Typing
mlica2
Independent Component Analysis using Maximum Likelihood
mlma
Multilevel Mediation Analysis
mlmc
Multi-Level Monte Carlo
MLmetrics
Machine Learning Evaluation Metrics
mlmmm
ML estimation under multivariate linear mixed models with missing values
mlmRev
Examples from Multilevel Modelling Software Review
mlogit
multinomial logit model
mlogitBMA
Bayesian Model Averaging for Multinomial Logit Models
mlPhaser
Multi-Locus Haplotype Phasing
MLPUGS
Multi-Label Prediction Using Gibbs Sampling (and Classifier Chains)
mlr
Machine Learning in R
MLRMPA
A package for Multilinear Regression Model Population Analysis
mlsjunkgen
Use the MLS Junk Generator Algorithm to Generate a Stream of Pseudo-Random Numbers
mlt
Most Likely Transformations
mlt.docreg
Most Likely Transformations: Documentation and Regression Tests
mltools
Machine Learning Tools
mlVAR
Multi-Level Vector Autoregression
mlxR
Simulation of Longitudinal Data
MM
The multiplicative multinomial distribution
MM2S
Single-Sample Classifier of Medulloblastoma Subtypes for Medulloblastoma Patient Samples, Mouse Models, and Cell Lines
MM2Sdata
Gene Expression Datasets for the 'MM2S' Package
mma
Multiple Mediation Analysis
mmand
Mathematical Morphology in Any Number of Dimensions
mmap
Map Pages of Memory
mmc
Multivariate Measurement Error Correction
mmcm
Modified Maximum Contrast Method
MMDai
Multivariate Multinomial Distribution Approximation and Imputation for Incomplete Data
mmds
Mixture Model Distance Sampling (mmds)
mme
Multinomial Mixed Effects Models
mmeln
Estimation of Multinormal Mixture Distribution
mmeta
Multivariate Meta-Analysis
mmm
an R package for analyzing multivariate longitudinal data with multivariate marginal models
mmm2
Multivariate marginal models with shared regression parameters
MMMS
Multi-Marker Molecular Signature for Treatment-specific Subgroup Identification
mmod
Modern Measures of Population Differentiation
mmpf
Monte-Carlo Methods for Prediction Functions
mmpp
Various Similarity and Distance Metrics for Marked Point Processes
mmppr
Markov Modulated Poisson Process for Unsupervised Event Detection in Time Series of Counts
MMS
Fixed effects Selection in Linear Mixed Models
mmtfa
Model-Based Clustering and Classification with Mixtures of Modified t Factor Analyzers
MMWRweek
Convert Dates to MMWR Day, Week, and Year
mnlogit
Multinomial Logit Model
MNM
Multivariate Nonparametric Methods. An Approach Based on Spatial Signs and Ranks
mnormpow
Multivariate Normal Distributions with Power Integrand
mnormt
The Multivariate Normal and t Distributions
MNP
R Package for Fitting the Multinomial Probit Model
MNS
Mixed Neighbourhood Selection
Mobilize
Mobilize plots and functions
MOCCA
Multi-objective optimization for collecting cluster alternatives
mockery
Mocking Library for R
mod09nrt
Extraction of Bands from MODIS Surface Reflectance Product MOD09 NRT
Modalclust
Hierarchical Modal Clustering
modeest
Mode Estimation
modehunt
Multiscale Analysis for Density Functions
modelfree
Model-free estimation of a psychometric function
ModelGood
Validation of risk prediction models
ModelMap
Modeling and Map Production using Random Forest and Stochastic Gradient Boosting
ModelMetrics
Rapid Calculation of Model Metrics
modelObj
A Model Object Framework for Regression Analysis
modelr
Modelling Functions that Work with the Pipe
modeltools
Tools and Classes for Statistical Models
modes
Find the Modes and Assess the Modality of Complex and Mixture Distributions, Especially with Big Datasets
modEvA
Model Evaluation and Analysis
modiscloud
R tools for processing Level 2 Cloud Mask products from MODIS
MODISTools
MODIS Subsetting Tools
modMax
Community Structure Detection via Modularity Maximization
modQR
Multiple-Output Directional Quantile Regression
modTempEff
Modelling temperature effects using time series data
moduleColor
Basic Module Functions
modules
Self Contained Units of Source Code
modygliani
MOlecular DYnamics GLobal ANalysis
mogavs
Multiobjective Genetic Algorithm for Variable Selection in Regression
MOJOV
Mojo Variants: Rare Variants analysis
mokken
Perform Mokken Scale Analysis in R
moko
Multi-Objective Kriging Optimization
molaR
Dental Surface Complexity Measurement Tools
mombf
Moment and Inverse Moment Bayes Factors
momentchi2
Moment-Matching Methods for Weighted Sums of Chi-Squared Random Variables
moments
Moments, cumulants, skewness, kurtosis and related tests
Momocs
Morphometrics using R
momr
Mining Metaomics Data (MetaOMineR)
mondate
Keep track of dates in terms of months
Mondrian
A Simple Graphical Representation of the Relative Occurrence and Co-Occurrence of Events
MonetDBLite
In-Process Version of MonetDB for R
MonetDB.R
Connect MonetDB to R
mongolite
Fast and Simple MongoDB Client for R
monitoR
Acoustic Template Detection in R
monkeylearn
Accesses the Monkeylearn API for Text Classifiers and Extractors
monmlp
Monotone Multi-Layer Perceptron Neural Network
monogeneaGM
Geometric Morphometric Analysis of Monogenean Anchors
monographaR
Taxonomic Monographs Tools
MonoInc
Monotonic Increasing
monomvn
Estimation for Multivariate Normal and Student-t Data with Monotone Missingness
MonoPhy
Allows to Explore Monophyly (or Lack of it) of Taxonomic Groups in a Phylogeny
MonoPoly
Functions to Fit Monotone Polynomials
monreg
Nonparametric Monotone Regression
moonBook
Functions and Datasets for the Book by Keon-Woong Moon
moonsun
Basic astronomical calculations with R
mopsocd
MOPSOCD: Multi-objective Particle Swarm Optimization with Crowding Distance
MOrder
Check Time Homogeneity and Markov Chain Order
morgenstemning
Color schemes compatible with red-green color perception difficulties
Morpho
Calculations and Visualisations Related to Geometric Morphometrics
morse
MOdelling Tools for Reproduction and Survival Data in Ecotoxicology
MorseGen
Simple raw data generator based on user-specified summary statistics.
MortalitySmooth
Smoothing and Forecasting Poisson Counts with P-Splines
MortHump
Measure the Young Adult Mortality Hump
mosaic
Project MOSAIC Statistics and Mathematics Teaching Utilities
mosaicData
Project MOSAIC Data Sets
mosaicQA
MOSAIC - Basic Quality Data Assurance for Epidemiologic Research
MoTBFs
Learning Hybrid Bayesian Networks using Mixtures of Truncated Basis Functions
MotilityLab
Quantitative Analysis of Motion
moult
Models for Analysing Moult in Birds
mountainplot
Mountain Plots, Folded Empirical Cumulative Distribution Plots
mousetrack
Mouse-Tracking Measures from Trajectory Data
mousetrap
Process and Analyze Mouse-Tracking Data
move
Visualizing and Analyzing Animal Track Data
moveHMM
Animal Movement Modelling using Hidden Markov Models
moveWindSpeed
Estimate Wind Speeds from Bird Trajectories
movMF
Mixtures of von Mises-Fisher Distributions
mp
Multidimensional Projection Techniques
mpa
CoWords Method
MPAgenomics
Multi-Patient Analysis of Genomic Markers
mpath
Regularized Linear Models
mpbart
Multinomial Probit Bayesian Additive Regression Trees
MPCI
Multivariate Process Capability Indices (MPCI)
mpcv
Multivariate Process Capability Vector
MPDiR
Data sets and scripts for Modeling Psychophysical Data in R.
mph
Multiscale persistent homology
MPINet
The package can implement the network-based metabolite pathway identification of pathways.
MPLikelihoodWB
Modified Profile Likelihood Estimation for Weibull Shape and Regression Parameters
mplot
Graphical Model Stability and Variable Selection Procedures
MplusAutomation
Automating Mplus Model Estimation and Interpretation
mpm
Multivariate Projection Methods
mpMap
Multi-parent RIL genetic analysis
mpmcorrelogram
Multivariate Partial Mantel Correlogram
mpmi
Mixed-Pair Mutual Information Estimators
mpoly
Symbolic Computation and More with Multivariate Polynomials
Mposterior
Mposterior: R package for Robust and Scalable Bayes via a Median of Subset Posterior Measures
mppa
Statistics for analysing multiple simultaneous point processes on the real line
mpr
Multi-Parameter Regression (MPR)
MPSEM
Modeling Phylogenetic Signals using Eigenvector Maps
mpt
Multinomial Processing Tree Models
MPTinR
Analyze Multinomial Processing Tree Models
mptools
RAMAS Metapop Tools
MPV
Data Sets from Montgomery, Peck and Vining's Book
mQTL
Metabolomic Quantitative Trait Locus Mapping
mra
Analysis of Mark-Recapture Data
mratios
Inferences for ratios of coefficients in the general linear model
MRCE
Multivariate regression with covariance estimation
MRCV
Methods for Analyzing Multiple Response Categorical Variables (MRCVs)
mrds
Mark-Recapture Distance Sampling
mreg
Fits regression models when the outcome is partially missing.
mregions
Marine Regions Data from 'Marineregions.org'
MRH
Multi-Resolution Estimation of the Hazard Rate
mri
Modified Rand Index (1 and 2.1 and 2.2) and Modified Adjusted Rand Index (1 and 2.1 and 2.2)
mritc
MRI Tissue Classification
mRm
An R package for conditional maximum likelihood estimation in mixed Rasch models.
mrMLM
Multilocus Random Mixed Linear Model for Genome-Wide Association Study and Linkage Analysis
MRMR
Multivariate Regression Models for Reserving
mRMRe
R package for parallelized mRMR ensemble feature selection
MRQoL
Minimal Clinically Important Difference and Response Shift Effect for Health-Related Quality of Life
MRS
Multi-Resolution Scanning for Cross-Sample Differences
MRSP
Multinomial Response Models with Structured Penalties
MRsurv
A multiplicative-regression model for relative survival.
MRwarping
Multiresolution time warping for functional data.
msaenet
Multi-Step Adaptive Elastic-Net
msaFACE
Moving Subset Analysis FACE
msap
Statistical analysis for Methylation-sensitive Amplification Polymorphism data
msarc
Draw Diagrams (mis)Representing the Results of Mass Spec Experiments
msBP
Multiscale Bernstein Polynomials for Densities
MSBVAR
Markov-Switching, Bayesian, Vector Autoregression Models
MSCMT
Multivariate Synthetic Control Method Using Time Series
MScombine
Combine Data from Positive and Negative Ionization Mode Finding Common Entities
mscstexta4r
R Client for the Microsoft Cognitive Services Text Analytics REST API
mscsweblm4r
R Client for the Microsoft Cognitive Services Web Language Model REST API
msda
Multi-Class Sparse Discriminant Analysis
mseapca
Metabolite set enrichment analysis for factor loading in principal component analysis
MSeasy
Preprocessing of Gas Chromatography-Mass Spectrometry (GC-MS) data
MSeasyTkGUI
MSeasy Tcl/Tk Graphical User Interface
MSG
Data and Functions for the Book Modern Statistical Graphics
MSGARCH
Markov-Switching GARCH Models
msgl
High Dimensional Multiclass Classification Using Sparse Group Lasso
MSGLasso
Multivariate Sparse Group Lasso for the Multivariate Multiple Linear Regression with an Arbitrary Group Structure
msgpackR
A library to serialize or unserialize data in MessagePack format
msgps
Degrees of freedom of elastic net, adaptive lasso and generalized elastic net
msir
Model-Based Sliced Inverse Regression
MSIseq
Assess Tumor Microsatellite Instability with a Decision Tree Classifier from Exome Somatic Mutations
msltrend
Improved Techniques to Estimate Trend, Velocity and Acceleration from Sea Level Records
msm
Multi-State Markov and Hidden Markov Models in Continuous Time
msma
Multiblock Sparse Multivariable Analysis
msme
Functions and Datasets for "Methods of Statistical Model Estimation".
msmtools
Building Augmented Data to Run Multi-State Models with 'msm' Package
msos
Datasets and Functions used in Multivariate Statistics: Old School by John Marden
MSQC
Multivariate Statistical Quality Control
msr
Morse-Smale Approximation, Regression and Visualization
ms.sev
Package for Calculation of ARMSS, Local MSSS and Global MSSS
msSurv
Nonparametric Estimation for Multistate Models
MST
Multivariate Survival Trees
mstate
Data Preparation, Estimation and Prediction in Multi-State Models
MSwM
Fitting Markov Switching Models
mtconnectR
Read Data from Delimited 'MTConnect' Data Files and Perform some Analysis
mtk
Mexico ToolKit library (MTK)
MTS
All-Purpose Toolkit for Analyzing Multivariate Time Series (MTS) and Estimating Multivariate Volatility Models
mtsdi
Multivariate time series data imputation
MTurkR
R Client for the MTurk Requester API
MTurkRGUI
A Graphical User Interface for MTurkR
MUCflights
Munich Franz-Josef-Strauss Airport Pattern Analysis
muckrock
Data on Freedom of Information Act Requests
MuFiCokriging
Multi-Fidelity Cokriging models
muhaz
Hazard Function Estimation in Survival Analysis
muir
Exploring Data with Tree Data Structures
MullerPlot
Generates Muller Plot from Population/Abundance/Frequency Dynamics Data
MultAlloc
Optimal Allocation in Stratified Sampling
multcomp
Simultaneous Inference in General Parametric Models
multcompView
Visualizations of Paired Comparisons
MultEq
Multiple Equivalence Tests and Simultaneous Confidence Intervals
multgee
GEE Solver for Correlated Nominal or Ordinal Multinomial Responses
multiAssetOptions
Finite Difference Method for Multi-Asset Option Valuation
multiband
Period Estimation for Multiple Bands
MultiBD
Multivariate Birth-Death Processes
multibiplotGUI
Multibiplot Analysis in R
multic
Quantitative Linkage Analysis Tools using the Variance Components Approach
multiCA
Multinomial Cochran-Armitage Trend Test
MultiCNVDetect
Multiple Copy Number Variation Detection
multicon
Multivariate Constructs
multicool
Permutations of Multisets in Cool-Lex Order
multiDimBio
Multivariate Analysis and Visualization for Biological Data
multifwf
Read Fixed Width Format Files Containing Lines of Different Type
MultiGHQuad
Multidimensional Gauss-Hermite Quadrature
multigraph
Plot and Manipulate Multigraphs
multigroup
Multigroup Data Analysis
MultiLCIRT
Multidimensional Latent Class Item Response Theory Models
multilevel
Multilevel Functions
multilevelPSA
Multilevel Propensity Score Analysis
multimark
Capture-Mark-Recapture Analysis using Multiple Non-Invasive Marks
MultiMeta
Meta-analysis of Multivariate Genome Wide Association Studies
multinbmod
Regression analysis of overdispersed correlated count data
MultinomialCI
Simultaneous confidence intervals for multinomial proportions according to the method by Sison and Glaz
multinomRob
Robust Estimation of Overdispersed Multinomial Regression Models
MultiOrd
Generation of Multivariate Ordinal Variates
multipanelfigure
Infrastructure to Assemble Multi-Panel Figures (from Grobs)
MultiPhen
A Package to Test for Pleiotropic Effects
multiPIM
Variable Importance Analysis with Population Intervention Models
multipleNCC
Weighted Cox-Regression for Nested Case-Control Data
multiplex
Algebraic Tools for the Analysis of Multiple Social Networks
multiplyr
Data Manipulation with Parallelism and Shared Memory Matrices
multipol
multivariate polynomials
multirich
Calculate Multivariate Richness via UTC and sUTC
MultiRR
Bias, Precision, and Power for Multi-Level Random Regressions
multisensi
Multivariate Sensitivity Analysis
multisom
Clustering a Data Set using Multi-SOM Algorithm
multispatialCCM
Multispatial Convergent Cross Mapping
MultiSV
MultiSV: an R package for identification of structural variations in multiple populations based on whole genome resequencing
multitaper
Multitaper Spectral Analysis Tools
MultivariateRandomForest
Models Multivariate Cases Using Random Forests
multivator
A multivariate emulator
multiwave
Estimation of Multivariate Long-Memory Models Parameters
multiway
Component Models for Multi-Way Data
multiwayvcov
Multi-Way Standard Error Clustering
MultNonParam
Multivariate Nonparametric Methods
multxpert
Common Multiple Testing Procedures and Gatekeeping Procedures
muma
Metabolomics Univariate and Multivariate Analysis
MuMIn
Multi-Model Inference
munfold
Metric Unfolding
munsell
Utilities for Using Munsell Colours
munsellinterpol
Interpolate Munsell Renotation Data from Hue/Chroma to CIE/sRGB
muRL
Mailmerge using R, LaTeX, and the Web
murphydiagram
Murphy Diagrams for Forecast Comparisons
musica
Multiscale Climate Model Assessment
musicNMR
Conversion of Nuclear Magnetic Resonance spectrum in audio file
muStat
Prentice Rank Sum Test and McNemar Test
mutoss
Unified Multiple Testing Procedures
mutossGUI
A Graphical User Interface for the MuToss Project
MuViCP
MultiClass Visualizable Classification using Combination of Projections
MVA
An Introduction to Applied Multivariate Analysis with R
mvabund
Statistical Methods for Analysing Multivariate Abundance Data
MVar.pt
Analise multivariada (brazilian portuguese)
MVB
Mutivariate Bernoulli log-linear model
MvBinary
Modelling Multivariate Binary Data with Blocks of Specific One-Factor Distribution
mvbutils
Workspace organization, code and documentation editing, package prep and editing, etc.
mvc
Multi-View Clustering
mvcluster
Multi-View Clustering
mvctm
Multivariate Variance Components Tests for Multilevel Data
mvcwt
Wavelet analysis of multiple time series
mvdalab
Multivariate Data Analysis Laboratory
mvglmmRank
Multivariate Generalized Linear Mixed Models for Ranking Sports Teams
mvinfluence
Influence Measures and Diagnostic Plots for Multivariate Linear Models
MVLM
Multivariate Linear Model with Analytic p-Values
mvmesh
Multivariate Meshes and Histograms in Arbitrary Dimensions
mvmeta
Multivariate and Univariate Meta-Analysis and Meta-Regression
mvMORPH
Multivariate Comparative Tools for Fitting Evolutionary Models to Morphometric Data
MVN
Multivariate Normality Tests
mvna
Nelson-Aalen estimator of the cumulative hazard in multistate models
mvnfast
Fast Multivariate Normal and Student's t Methods
mvngGrAd
Moving Grid Adjustment in Plant Breeding Field Trials
mvnmle
ML estimation for multivariate normal data with missing values.
mvnormtest
Normality test for multivariate variables
mvnpermute
Generate New Multivariate Normal Samples from Permutations
mvnTest
Goodness of Fit Tests for Multivariate Normality
mvoutlier
Multivariate outlier detection based on robust methods
mvPot
Multivariate Peaks-over-Threshold Modelling for Spatial Extreme Events
mvProbit
Multivariate Probit Models
mvprpb
Orthant Probability of the Multivariate Normal Distribution
mvQuad
Methods for Multivariate Quadrature
MVR
Mean-Variance Regularization
mvrtn
Mean and Variance of Truncated Normal Distribution
mvsf
Shapiro-Francia Multivariate Normality Test
mvShapiroTest
Generalized Shapiro-Wilk test for multivariate normality
mvSLOUCH
Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses
mvst
Bayesian Inference for the Multivariate Skew-t Model
MVT
Estimation and Testing for the Multivariate t-Distribution
mvtboost
Tree Boosting for Multivariate Outcomes
mvtmeta
Multivariate meta-analysis
mvtnorm
Multivariate Normal and t Distributions
mvtsplot
Multivariate Time Series Plot
mwa
Causal Inference in Spatiotemporal Event Data
mwaved
Multichannel Wavelet Deconvolution with Additive Long Memory Noise
MWLasso
Penalized Moving-Window Lasso Method for Genome-Wide Association Studies
mxkssd
Efficient mixed-level k-circulant supersaturated designs
MXM
Discovering Multiple, Statistically-Equivalent Signatures
mycobacrvR
Integrative immunoinformatics for Mycobacterial diseases in R platform
mycor
Automatic Correlation and Regression Test in a Data Frame
myepisodes
MyEpisodes RSS/API functions
Myrrix
Interface to Myrrix. Myrrix is a complete, real-time, scalable clustering and recommender system, evolved from Apache Mahout.
Myrrixjars
External jars required for package Myrrix.
myTAI
Perform Evolutionary Transcriptomics Studies
mztwinreg
Regression Models for Monozygotic Twin Data
nabor
Wraps 'libnabo', a Fast K Nearest Neighbour Library for Low Dimensions
NADA
Nondetects And Data Analysis for environmental data
nadiv
(Non)Additive Genetic Relatedness Matrices
NAEPprimer
The NAEP Primer
NAM
Nested Association Mapping
namespace
Provide namespace managment functions not (yet) present in base R
nanop
Tools for Nanoparticle Simulation and Calculation of PDF and Total Scattering Structure Function
NanoStringNorm
Normalize NanoString miRNA and mRNA Data
NAPPA
Performs the Processing and Normalisation of Nanostring miRNA and mRNA Data
naptime
A Flexible and Robust Sys.sleep() Replacement
nasadata
Interface to Various NASA API's
nasaweather
Collection of datasets from the ASA 2006 data expo
nat
NeuroAnatomy Toolbox for Analysis of 3D Image Data
nat.nblast
NeuroAnatomy Toolbox ('nat') Extension for Assessing Neuron Similarity and Clustering
nat.templatebrains
NeuroAnatomy Toolbox ('nat') Extension for Handling Template Brains
naturalsort
Natural Ordering
nat.utils
File System Utility Functions for 'NeuroAnatomy Toolbox'
NB
Maximum Likelihood method in estimating effective population size from genetic data
nbc4va
Bayes Classifier for Verbal Autopsy Data
NbClust
Determining the Best Number of Clusters in a Data Set
nbconvertR
Vignette Engine Wrapping IPython Notebooks
NBDdirichlet
NBD-Dirichlet Model of Consumer Buying Behavior for Marketing Research
nbpMatching
Functions for Optimal Non-Bipartite Matching
NBPSeq
Negative Binomial Models for RNA-Sequencing Data
NCA
Necessary Condition Analysis
nCal
Nonlinear Calibration
ncappc
NCA Calculation and Population PK Model Diagnosis
ncbit
retrieve and build NBCI taxonomic data
ncdf4
Interface to Unidata netCDF (Version 4 or Earlier) Format Data Files
ncdf4.helpers
Helper functions for use with the ncdf4 package
ncdf.tools
Easier 'NetCDF' File Handling
nCDunnett
Noncentral Dunnett's Test Distribution
ncf
Spatial Nonparametric Covariance Functions
ncg
Computes the noncentral gamma function
NCmisc
Miscellaneous Functions for Creating Adaptive Functions and Scripts
ncvreg
Regularization Paths for SCAD and MCP Penalized Regression Models
ndjson
Wicked-Fast Streaming 'JSON' ('ndjson') Reader
ndl
Naive Discriminative Learning
ndtv
Network Dynamic Temporal Visualizations
NEArender
Network Enrichment Analysis
nearfar
Near-Far Matching
neariso
Near-Isotonic Regression
neat
Efficient Network Enrichment Analysis Test
NeatMap
Non-clustered heatmap alternatives
needs
Attaches and Installs Packages
needy
needy
NEff
Calculating Effective Sizes Based on Known Demographic Parameters of a Population
NegBinBetaBinreg
Negative Binomial and Beta Binomial Bayesian Regression Models
negenes
Estimating the Number of Essential Genes in a Genome
neldermead
R port of the Scilab neldermead module
neotoma
Access to the Neotoma Paleoecological Database Through R
nephro
Biostatistics Utilities for Nephrology
NEpiC
Network Assisted Algorithm for Epigenetic Studies Using Mean and Variance Combined Signals
NestedCategBayesImpute
Modeling and Generating Synthetic Versions of Nested Categorical Data in the Presence of Impossible Combinations
NestedCohort
Survival Analysis for Cohorts with Missing Covariate Information
nestedRanksTest
Mann-Whitney-Wilcoxon Test for Nested Ranks
netassoc
Inference of Species Associations from Co-Occurrence Data
netClass
netClass: An R Package for Network-Based Biomarker Discovery
NetCluster
Clustering for networks
netcoh
Statistical Modeling with Network Cohesion
NetComp
Network Generation and Comparison
NetData
Network Data for McFarland's SNA R labs
netdiffuseR
Analysis of Diffusion and Contagion Processes on Networks
netgen
Network Generator for Combinatorial Graph Problems
netgsa
Network-Based Gene Set Analysis
NetIndices
Estimating network indices, including trophic structure of foodwebs in R
netmeta
Network Meta-Analysis using Frequentist Methods
NetOrigin
Origin Estimation for Propagation Processes on Complex Networks
NetPreProc
Network Pre-Processing and Normalization
NetRep
Permutation Testing Network Module Preservation Across Datasets
nets
Network Estimation for Time Series
NetSim
A Social Networks Simulation Tool in R
NetSwan
Network Strengths and Weaknesses Analysis
nettools
A Network Comparison Framework
network
Classes for Relational Data
NetworkComparisonTest
Statistical Comparison of Two Networks Based on Three Invariance Measures
networkD3
D3 JavaScript Network Graphs from R
networkDynamic
Dynamic Extensions for Network Objects
networkDynamicData
Dynamic (Longitudinal) Network Datasets
networkreporting
Tools for using Network Reporting Estimators
networksis
Simulate Bipartite Graphs with Fixed Marginals Through Sequential Importance Sampling
networkTomography
Tools for network tomography
neural
Neural Networks
neuralnet
Training of Neural Networks
NeuralNetTools
Visualization and Analysis Tools for Neural Networks
neurobase
'Neuroconductor' Base Package with Helper Functions for 'nifti' Objects
neuroblastoma
Neuroblastoma copy number profiles
neuroim
Data Structures and Handling for Neuroimaging Data
neuropsychology
An R Toolbox for Psychologists, Neuropsychologists and Neuroscientists
neuRosim
Functions to Generate fMRI Data Including Activated Data, Noise Data and Resting State Data
Newdistns
Computes Pdf, Cdf, Quantile and Random Numbers, Measures of Inference for 19 General Families of Distributions
nFactors
Parallel Analysis and Non Graphical Solutions to the Cattell Scree Test
nFCA
Numerical Formal Concept Analysis for Systematic Clustering
NFP
Network Fingerprint Framework in R
ngram
Fast n-Gram 'Tokenization'
ngramrr
A Simple General Purpose N-Gram Tokenizer
ngspatial
Fitting the Centered Autologistic and Sparse Spatial Generalized Linear Mixed Models for Areal Data
NHANES
Data from the US National Health and Nutrition Examination Study
nhanesA
NHANES Data Retrieval
NHEMOtree
Non-hierarchical evolutionary multi-objective tree learner to perform cost-sensitive classification
nhlscrapr
Compiling the NHL Real Time Scoring System Database for easy use in R
NHMM
Bayesian Non-Homogenous Markov and Mixture Models (Multiple Time Series)
NHMSAR
Non-Homogeneous Markov Switching Autoregressive Models
NHPoisson
Modelling and Validation of Non Homogeneous Poisson Processes
nhstplot
Plot Null Hypothesis Significance Tests
nice
Get or Set UNIX Niceness
nicheROVER
(Niche) (R)egion and Niche (Over)lap Metrics for Multidimensional Ecological Niches
NightDay
Night and Day Boundary Plot Funtion
nima
Nima Hejazi's Miscellaneous R Code
nimble
Flexible BUGS-Compatible System for Hierarchical Statistical Modeling and Algorithm Development
Nippon
Japanese Utility Functions and Data
NIPTeR
Fast and Accurate Trisomy Prediction in Non-Invasive Prenatal Testing
NISTnls
Nonlinear least squares examples from NIST
NISTunits
Fundamental Physical Constants and Unit Conversions from NIST
nivm
Noninferiority Tests with Variable Margins
NlcOptim
Solve Nonlinear Optimization with Nonlinear Constraints
nleqslv
Solve Systems of Nonlinear Equations
nlme
Linear and Nonlinear Mixed Effects Models
nlmeODE
Non-linear mixed-effects modelling in nlme using differential equations
nlmeU
Datasets and utility functions enhancing functionality of nlme package.
nlmrt
Functions for Nonlinear Least Squares Solutions
nlnet
Nonlinear Network Reconstruction and Clustering Based on DCOL (Distance Based on Conditional Ordered List)
nloptr
R interface to NLopt
NLP
Natural Language Processing Infrastructure
NLPutils
Natural Language Processing Utilities
nlreg
Higher Order Inference for Nonlinear Heteroscedastic Models
NLRoot
searching for the root of equation
nlrr
Non-Linear Relative Risk Estimation and Plotting
nls2
Non-linear regression with brute force
nlsem
Fitting Structural Equation Mixture Models
nlshrink
Non-Linear Shrinkage Estimation of Population Eigenvalues and Covariance Matrices
nlsMicrobio
Nonlinear regression in predictive microbiology
nlsmsn
Fitting nonlinear models with scale mixture of skew-normal distributions.
nlstimedist
Non-Linear Model Fitting of Time Distribution of Biological Phenomena
nlstools
Tools for Nonlinear Regression Analysis
NlsyLinks
Utilities and Kinship Information for Research with the NLSY
nlt
A nondecimated lifting transform for signal denoising
nlts
(non)linear time series analysis
nLTT
Calculate the NLTT Statistic
nlWaldTest
Wald Test of Nonlinear Restrictions and Nonlinear CI
nmcdr
Non-parametric Multiple Change-points Detection
NMF
Algorithms and Framework for Nonnegative Matrix Factorization (NMF)
nmfgpu4R
Non-Negative Matrix Factorization (NMF) using CUDA
NMFN
Non-negative Matrix Factorization
NMI
Normalized Mutual Information of Community Structure in Network
NMOF
Numerical Methods and Optimization in Finance
nnet
Feed-Forward Neural Networks and Multinomial Log-Linear Models
nnetpredint
Prediction Intervals of Multi-Layer Neural Networks
nnlasso
Non-Negative Lasso and Elastic Net Penalized Generalized Linear Models
NNLM
Fast and Versatile Non-Negative Matrix Factorization
nnls
The Lawson-Hanson algorithm for non-negative least squares (NNLS)
NNS
Nonlinear Nonparametric Statistics
NNTbiomarker
Calculate Design Parameters for Biomarker Validation Studies
nodeHarvest
Node Harvest for Regression and Classification
nodiv
Compares the Distribution of Sister Clades Through a Phylogeny
noia
Implementation of the Natural and Orthogonal InterAction (NOIA) model
noise
Estimation of Intrinsic and Extrinsic Noise from Single-Cell Data
NoiseFiltersR
Label Noise Filters for Data Preprocessing in Classification
nomadlist
Interface to the Nomad List API
nomclust
Hierarchical Nominal Clustering Package
NominalLogisticBiplot
Biplot representations of categorical data
nomogramEx
Extract Equations from a Nomogram
noncensus
U.S. Census Regional and Demographic Data
NonCompart
Noncompartmental Analysis of Pharmacokinetics
noncompliance
Causal Inference in the Presence of Treatment Noncompliance Under the Binary Instrumental Variable Model
nonlinearTseries
Nonlinear Time Series Analysis
nonmem2R
Loading NONMEM Output Files and Simulate with Parameter Uncertainty
nonnest2
Tests of Non-Nested Models
nonparaeff
Nonparametric Methods for Measuring Efficiency and Productivity
NonpModelCheck
Model Checking and Variable Selection in Nonparametric Regression
nonrandom
Stratification and matching by the propensity score
nontarget
Detecting Isotope, Adduct and Homologue Relations in LC-MS Data
nontargetData
Quantized simulation data of isotope pattern centroids
nopp
Nash Optimal Party Positions
nor1mix
Normal (1-d) Mixture Models (S3 Classes and Methods)
nordklimdata1
Dataset for Climate Analysis with Data from the Nordic Region
norm
Analysis of multivariate normal datasets with missing values
norm2
Analysis of Incomplete Multivariate Data under a Normal Model
NormalGamma
Normal-gamma convolution model
NormalLaplace
The Normal Laplace Distribution
normalp
Routines for Exponential Power Distribution
NormPsy
Normalisation of Psychometric Tests
NORMT3
Evaluates complex erf, erfc, Faddeeva, and density of sum of Gaussian and Student's t
normtest
Tests for Normality
normwhn.test
Normality and White Noise Testing
NORRRM
Geochemical Toolkit for R
NORTARA
Generation of Multivariate Data with Arbitrary Marginals
nortest
Tests for Normality
nortestARMA
Neyman Smooth Tests of Normality for the Errors of ARMA Models
nose
nose Package for R
NostalgiR
Advanced Text-Based Plots
not
Narrowest-Over-Threshold Change-Point Detection
notifyme
Send Alerts to your Cellphone and Phillips Hue Lights
notifyR
Send push notifications to your smartphone via pushover.net (ACCOUNT REQUIRED!)
novelist
NOVEL Integration of the Sample and Thresholded (NOVELIST) Correlation and Covariance Estimators
noweb
Noweb system for R
Nozzle.R1
Nozzle Reports
np
Nonparametric kernel smoothing methods for mixed data types
nparACT
Non-Parametric Measures of Actigraphy Data
nparcomp
Multiple Comparisons and Simultaneous Confidence Intervals
nparLD
Nonparametric Analysis of Longitudinal Data in Factorial Experiments
NPBayesImpute
Non-Parametric Bayesian Multiple Imputation for Categorical Data
npbr
Nonparametric Boundary Regression
NPC
Nonparametric Combination of Hypothesis Tests
NPCD
Nonparametric Methods for Cognitive Diagnosis
NPCirc
Nonparametric Circular Methods
npcp
Some Nonparametric Tests for Change-Point Detection in Possibly Multivariate Observations
npde
Normalised prediction distribution errors for nonlinear mixed-effect models
NPflow
Bayesian Nonparametrics for Automatic Gating of Flow-Cytometry Data
NPHMC
Sample Size Calculation for the Proportional Hazards Mixture Cure Model
npIntFactRep
Nonparametric Interaction Tests for Factorial Designs with Repeated Measures
nplplot
Plotting linkage and association results
nplr
N-Parameter Logistic Regression
NPMLEcmprsk
Type-Specific Failure Rate and Hazard Rate on Competing Risks Data
npmlreg
Nonparametric maximum likelihood estimation for random effect models
NPMPM
tertiary probabilistic model in predictive microbiology for use in food manufacture
npmr
Nuclear Penalized Multinomial Regression
npmv
Nonparametric Comparison of Multivariate Samples
NPMVCP
Nonparametric Multivariate Change Point Model
nppbib
Nonparametric Partially-Balanced Incomplete Block Design Analysis
npregfast
Nonparametric Estimation of Regression Models with Factor-by-Curve Interactions
nprobust
Robust Data-Driven Statistical Inference for Local Polynomial Regression and Kernel Density Estimation
nproc
Neyman-Pearson Receiver Operating Characteristics
npROCRegression
Kernel-Based Nonparametric ROC Regression Modelling
NPS
Convenience Functions and Tests for Working With the Net Promoter Score (NPS)
npsf
Nonparametric and Stochastic Efficiency and Productivity Analysis
NPsimex
Nonparametric Smoothing for contaminated data using Simulation-Extrapolation
npsm
Package for Nonparametric Statistical Methods using R
npsp
Nonparametric Spatial Statistics
npst
Generalization of Hewitt's Seasonality Test
npsurv
Non-Parametric Survival Analysis
NSA
Post-normalization of total copy numbers
nscancor
Non-Negative and Sparse CCA
NScluster
Simulation and Estimation of the Neyman-Scott Type Spatial Cluster Models
nsga2R
Elitist Non-dominated Sorting Genetic Algorithm based on R
nsgp
Non-Stationary Gaussian Process Regression
NSM3
Functions and Datasets to Accompany Hollander, Wolfe, and Chicken - Nonparametric Statistical Methods, Third Edition
nsprcomp
Non-Negative and Sparse PCA
nsRFA
Non-supervised Regional Frequency Analysis
NSUM
Network Scale Up Method
nucim
Nucleus Imaging Toolbox
NUCOMBog
NUtrient Cycling and COMpetition Model Undisturbed Open Bog Ecosystems in a Temperate to Sub-Boreal Climate
nullabor
Tools for Graphical Inference
numbers
Number-Theoretic Functions
numDeriv
Accurate Numerical Derivatives
numOSL
Numeric Routines for Optically Stimulated Luminescence Dating
nutshell
Data for "R in a Nutshell"
nutshell.audioscrobbler
Audioscrobbler data for "R in a Nutshell"
nutshell.bbdb
Baseball Database for "R in a Nutshell"
nws
R functions for NetWorkSpaces and Sleigh
nycflights13
Flights that Departed NYC in 2013
nzelect
New Zealand Election Results
oaColors
OpenAnalytics Colors Package
oai
General Purpose 'Oai-PMH' Services Client
OAIHarvester
Harvest Metadata Using OAI-PMH v2.0
oapackage
Orthogonal Array Package
oaPlots
OpenAnalytics Plots Package
Oarray
Arrays with arbitrary offsets
oasis
Multiple Sclerosis Lesion Segmentation using Magnetic Resonance Imaging (MRI)
OasisR
Outright Tool for the Analysis of Spatial Inequalities and Segregation
oaxaca
Blinder-Oaxaca Decomposition
obAnalytics
Limit Order Book Analytics
objectProperties
A factory of self-describing properties.
objectSignals
objectSignals
obliclus
Cluster-based factor rotation
obliqueRF
Oblique Random Forests from Recursive Linear Model Splits
oblique.tree
Oblique Trees for Classification Data
obs.agree
An R package to assess agreement between observers.
OBsMD
Objective Bayesian Model Discrimination in Follow-Up Designs
obsSens
Sensitivity analysis for Observational studies.
oc
OC Roll Call Analysis Software
occ
Estimates PET neuroreceptor occupancies
oce
Analysis of Oceanographic Data
ocean
Biophysical Oceanography Tools
oceanmap
A Plotting Toolbox for 2D Oceanographic Data
OceanView
Visualisation of Oceanographic Data and Model Output
ocedata
Oceanographic Datasets for Oce
ockc
Order Constrained Solutions in k-Means Clustering
ocomposition
Regression for Rank-Indexed Compositional Data
OData
R Helper for OData Web Services
ODB
Open Document Databases (.odb) management
odds.converter
Betting Odds Conversion
oddsratio
Odds Ratio Calculation for GAM(M)s & GLM(M)s
odeintr
C++ ODE Solvers Compiled on-Demand
odfWeave
Sweave processing of Open Document Format (ODF) files
odfWeave.survey
Support for odfWeave on the survey package
ODMconverter
Tools to Convert ODM Files
oec
Use the Observatory of Economic Complexity's API in R
OECD
Search and Extract Data from the OECD
oem
Orthogonalizing EM
oglmx
Estimation of Ordered Generalized Linear Models
Ohmage
R Client for Ohmage 2 server
OIdata
Data sets and supplements (OpenIntro)
oii
Crosstab and Statistical Tests for OII MSc Stats Course
OIsurv
Survival analysis supplement to OpenIntro guide
OjaNP
Multivariate Methods Based on the Oja Median and Related Concepts
okcupiddata
OkCupid Profile Data for Introductory Statistics and Data Science Courses
okmesonet
Retrieve Oklahoma Mesonet climatological data
olctools
Open Location Code Handling in R
OligoSpecificitySystem
Oligo Specificity System
OLScurve
OLS growth curve trajectories
omd
filter the molecular descriptors for QSAR
OmicKriging
Poly-Omic Prediction of Complex TRaits
omics
'--omics' Data Analysis Toolbox
oncomodel
Maximum likelihood tree models for oncogenesis
Oncotree
Estimating oncogenetic trees
OneArmPhaseTwoStudy
Planing, Monitoring and Evaluating Oncological Phase 2 Studies
onemap
Software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and backcrosses
OneR
One Rule Machine Learning Classification Algorithm with Enhancements
ONETr
Efficient Authenticated Interaction with the O*NET API
OneTwoSamples
Deal with one and two (normal) samples
onewaytests
One-Way Independent Groups Design
onion
octonions and quaternions
onlineCPD
Detect Changepoints in Multivariate Time Series
onlinePCA
Online Principal Component Analysis
onls
Orthogonal Nonlinear Least-Squares Regression
ontologyIndex
Functions for Reading Ontologies into R
ontologyPlot
Functions for Visualising Sets of Ontological Terms
ontologySimilarity
Functions for Calculating Ontological Similarities
OOmisc
Ozgur-Ozlem Miscellaneous
OpasnetUtils
Opasnet Modelling Environment Utility Functions
OPDOE
OPtimal Design Of Experiments
opefimor
Option Pricing and Estimation of Financial Models in R
openadds
Client to Access 'Openaddresses.io' Data
openair
Tools for the Analysis of Air Pollution Data
opencage
Interface to the OpenCage API
OpenCL
Interface allowing R to use OpenCL
opencpu
Embedded Scientific Computing and Reproducible Research with R
OpenImageR
An Image Processing Toolkit
openintro
OpenIntro data sets and supplemental functions
OpenML
Exploring Machine Learning Better, Together
OpenMPController
Control number of OpenMP threads dynamically
OpenMx
Extended Structural Equation Modelling
openNLP
Apache OpenNLP Tools Interface
openNLPdata
Apache OpenNLP Jars and Basic English Language Models
OpenRepGrid
Tools to analyse repertory grid data
openssl
Toolkit for Encryption, Signatures and Certificates Based on OpenSSL
OpenStreetMap
Access to Open Street Map Raster Images
opentraj
Tools for Creating and Analysing Air Trajectory Data
openVA
Automated Method for Verbal Autopsy
openxlsx
Read, Write and Edit XLSX Files
opera
Online Prediction by Expert Aggregation
operators
Additional Binary Operators
operator.tools
Utilities for Working with R's Operators
OPI
Open Perimetry Interface
ops
Optimal Power Space Transformation
optAUC
Optimal Combinations of Diagnostic Tests Based on AUC
optband
'surv' Object Confidence Bands Optimized by Area
optBiomarker
Estimation of optimal number of biomarkers for two-group microarray based classifications at a given error tolerance level for various classification rules
optCluster
Determine Optimal Clustering Algorithm and Number of Clusters
optDesignSlopeInt
Optimal Designs for Estimating the Slope Divided by the Intercept
optextras
Tools to Support Optimization Possibly with Bounds and Masks
OptGS
Near-Optimal and Balanced Group-Sequential Designs for Clinical Trials with Continuous Outcomes
OptHedging
Estimation of value and hedging strategy of call and put options.
optifunset
Set Options if Unset
optigrab
Command-Line Parsing for an R World
OptimalCutpoints
Computing optimal cutpoints in diagnostic tests
OptimalDesign
Algorithms for D-, A-, and IV-Optimal Designs
OptimaRegion
Confidence Regions for Optima
optimbase
R port of the Scilab optimbase module
optimization
Multi-Purpose Optimization
optimr
A Replacement and Extension of the 'optim' Function
optimsimplex
R port of the Scilab optimsimplex module
optimx
A Replacement and Extension of the optim() Function
OptInterim
Optimal Two and Three Stage Designs for Single-Arm and Two-Arm Randomized Controlled Trials with a Long-Term Binary Endpoint
OptionPricing
Option Pricing with Efficient Simulation Algorithms
OptiQuantR
Simplifies and Automates Analyzing and Reporting OptiQuant's log Data
optiRum
Financial Functions & More
optiscale
Optimal scaling
optiSel
Optimum Contribution Selection and Pedigree Analysis
optismixture
Optimal Mixture Weights in Multiple Importance Sampling
optmatch
Functions for Optimal Matching
optparse
Command Line Option Parser
optpart
Optimal Partitioning of Similarity Relations
optR
Optimization Toolbox for Solving Linear Systems
optrees
Optimal Trees in Weighted Graphs
ora
Convenient Tools for Working with Oracle Databases
orca
Computation of Graphlet Orbit Counts in Sparse Graphs
ORCI
Several confidence intervals for the odds ratio
orclus
ORCLUS subspace clustering
ORCME
Order Restricted Clustering for Microarray Experiments
orcutt
Estimate procedure in case of first order autocorrelation
ordBTL
Modelling comparison data with ordinal response
ordcrm
Likelihood-Based Continual Reassessment Method (CRM) Dose Finding Designs
ordDisp
Separating Location and Dispersion in Ordinal Regression Models
orddom
Ordinal Dominance Statistics
ORDER2PARENT
Estimate parent distributions with data of several order statistics
orderbook
Orderbook visualization/Charting software
orderedLasso
Ordered Lasso and Time-lag Sparse Regression
OrdFacReg
Least Squares, Logistic, and Cox-Regression with Ordered Predictors
ordiBreadth
Ordinated Diet Breadth
ordinal
Regression Models for Ordinal Data
ordinalCont
Ordinal Regression Analysis for Continuous Scales
ordinalgmifs
Ordinal Regression for High-Dimensional Data
OrdinalLogisticBiplot
Biplot representations of ordinal variables
ordinalNet
Penalized Ordinal Regression
OrdLogReg
Ordinal Logic Regression
OrdMonReg
Compute least squares estimates of one bounded or two ordered isotonic regression curves
OrdNor
Concurrent Generation of Ordinal and Normal Data with Given Correlation Matrix and Marginal Distributions
ordPens
Selection and/or Smoothing of Ordinal Predictors
ore
An R Interface to the Oniguruma Regular Expression Library
ores
Connector to the Objective Revision Evaluation Service (ORES)
OrgMassSpecR
Organic Mass Spectrometry
orgR
Analyse Text Files Created by Emacs' Org mode
ORIClust
Order-restricted Information Criterion-based Clustering Algorithm
orientlib
Support for orientation data
OriGen
Fast Spatial Ancestry via Flexible Allele Frequency Surfaces
originr
Fetch Species Origin Data from the Web
orloca
The package deals with Operations Research LOCational Analysis models
orloca.es
Spanish version of orloca package
ORMDR
ORMDR
oro.dicom
Rigorous - DICOM Input / Output
oro.nifti
Rigorous - NIfTI + ANALYZE + AFNI : Input / Output
oro.pet
Rigorous - Positron Emission Tomography
orQA
Order Restricted Assessment Of Microarray Titration Experiments
orsifronts
Southern Ocean Frontal Distributions (Orsi)
orsk
Converting Odds Ratio to Relative Risk in Cohort Studies with Partial Data Information
orthogonalsplinebasis
Orthogonal B-Spline Basis Functions
OrthoPanels
Dynamic Panel Models with Orthogonal Reparameterization of Fixed Effects
orthopolynom
Collection of functions for orthogonal and orthonormal polynomials
osc
Orthodromic Spatial Clustering
osd
Orthogonal Signal Deconvolution for Spectra Deconvolution in GC-MS and GCxGC-MS Data
osDesign
Design and analysis of observational studies
osi
Open Source Initiative API Connector
osmar
OpenStreetMap and R
osmplotr
Customisable Images of OpenStreetMap Data
OSMscale
Add a Scale Bar to 'OpenStreetMap' Plots
osrm
Interface Between R and the OpenStreetMap-Based Routing Service OSRM
OTE
Optimal Trees Ensembles for Regression, Classification and Class Membership Probability Estimation
otrimle
Robust Model-Based Clustering
OTRselect
Variable Selection for Optimal Treatment Decision
OTUtable
North Temperate Lakes - Microbial Observatory 16S Time Series Data and Functions
ouch
Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses
outbreaker
Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data
outbreaks
A Collection of Disease Outbreak Data
OutbreakTools
Basic Tools for the Analysis of Disease Outbreaks
OutlierDC
Outlier Detection using quantile regression for Censored Data
OutlierDM
Outlier Detection for Multi-replicated High-throughput Data
outliers
Tests for outliers
OutrankingTools
Functions for Solving Multiple-criteria Decision-making Problems
OUwie
Analysis of Evolutionary Rates in an OU Framework
overlap
Estimates of Coefficient of Overlapping for Animal Activity Patterns
overlapping
Estimation of Overlapping in Empirical Distributions
oXim
Oxycline Index from Matrix Echograms
OxyBS
Processing of Oxy-Bisulfite Microarray Data
oz
Plot the Australian Coastline and States
P2C2M
Posterior Predictive Checks of Coalescent Models
p2distance
Welfare's Synthetic Indicator
p3state.msm
Analyzing survival data
pa
Performance Attribution for Equity Portfolios
PAactivPAL
Summarize Daily Physical Activity from 'activPAL' Accelerometer Data
PabonLasso
Pabon Lasso Graphs and Comparing Situations of a Unit in Two Different Times
PAC
Partition-Assisted Clustering
PACBO
Clustering Online Datasets
pacbpred
PAC-Bayesian Estimation and Prediction in Sparse Additive Models.
pack
Convert values to/from raw vectors
packagedocs
Build Website of Package Documentation
packagetrackr
Track R Package Downloads from RStudio's CRAN Mirror
packcircles
Circle Packing
packClassic
Toy example of Pack Classic
packHV
A few Useful Functions for Statisticians
packrat
A Dependency Management System for Projects and their R Package Dependencies
packS4
Toy Example of S4 Package
pacman
Package Management Tool
paco
Procrustes Application to Cophylogenetic Analysis
pact
Predictive Analysis of Clinical Trials
PACVB
Variational Bayes (VB) Approximation of Gibbs Posteriors with Hinge Losses
Pade
Padé Approximant Coefficients
paf
Attributable Fraction Function for Censored Survival Data
PAFit
Nonparametric Estimation of Preferential Attachment and Node Fitness in Temporal Complex Networks
pagenum
Put Page Numbers on Graphics
pageviews
An API Client for Wikimedia Traffic Data
PAGI
The package can identify the dysregulated KEGG pathways based on global influence from the internal effect of pathways and crosstalk between pathways.
PAGWAS
Pathway Analysis Methods for Genomewide Association Data
paintmap
Plotting Paintmaps
pairedCI
Confidence intervals for the ratio of locations and for the ratio of scales of two paired samples
PairedData
Paired Data Analysis
pairheatmap
A tool for comparing heatmaps
pairsD3
D3 Scatterplot Matrices
PairViz
Visualization using Eulerian tours and Hamiltonian decompositions
pairwise
Rasch Model Parameters by Pairwise Algorithm
pairwiseCI
Confidence Intervals for Two Sample Comparisons
palaeoSig
Significance Tests for Palaeoenvironmental Reconstructions
paleobioDB
Download and Process Data from the Paleobiology Database
paleofire
Analysis of Charcoal Records from the Global Charcoal Database
paleoMAS
Paleoecological Analysis
paleomorph
Geometric Morphometric Tools for Paleobiology
paleotree
Paleontological and Phylogenetic Analyses of Evolution
paleoTS
Analyze Paleontological Time-Series
palettetown
Use Pokemon Inspired Colour Palettes
palinsol
Insolation for Palaeoclimate Studies
palr
Colour Palettes for Data
pamctdp
Principal Axes Methods for Contingency Tables with Partition Structures on Rows and Columns
pamm
Power Analysis for Random Effects in Mixed Models
pampe
Implementation of the Panel Data Approach Method for Program Evaluation
pamr
Pam: prediction analysis for microarrays
pan
Multiple Imputation for Multivariate Panel or Clustered Data
pAnalysis
Benchmarking and Rescaling R2 using Noise Percentile Analysis
PANDA
Preferential Attachment Based Common Neighbor Distribution Derived Functional Associations
pander
An R Pandoc Writer
pandocfilters
Pandoc Filters for R
panelaggregation
Aggregate Longitudinal Survey Data
panelAR
Estimation of Linear AR(1) Panel Data Models with Cross-Sectional Heteroskedasticity and/or Correlation
PanelCount
Random Effects and/or Sample Selection Models for Panel Count Data
Paneldata
Linear models for panel data
pangaear
Client for the 'Pangaea' Database
PANICr
PANIC Tests of Nonstationarity
PanJen
A Semi-Parametric Test for Specifying Functional Form
papayar
View Medical Research Images using the Papaya JavaScript Library
papeR
A Toolbox for Writing Pretty Papers and Reports
ParallelForest
Random Forest Classification with Parallel Computing
parallelize.dynamic
Automate parallelization of function calls by means of dynamic code analysis
parallelMap
Unified Interface to Parallelization Back-Ends
parallelMCMCcombine
Methods for combining independent subset Markov chain Monte Carlo (MCMC) posterior samples to estimate a posterior density given the full data set
parallelML
A Parallel-Voting Algorithm for many Classifiers
ParallelPC
Paralellised Versions of Constraint Based Causal Discovery Algorithms
parallelSVM
A Parallel-Voting Version of the Support-Vector-Machine Algorithm
ParallelTree
Parallel Tree
paramGUI
A Shiny GUI for some Parameter Estimation Examples
ParamHelpers
Helpers for Parameters in Black-Box Optimization, Tuning and Machine Learning
paramlink
Parametric Linkage Analysis in R
params
Simplify Parameters
paran
Horn's Test of Principal Components/Factors
parboost
Distributed Model-Based Boosting
parcor
Regularized estimation of partial correlation matrices
ParDNAcopy
Parallel implementation of the "segment" function of package "DNAcopy"
ParentOffspring
Conduct the Parent-Offspring Test Using Monomorphic SNP Markers
ParetoPosStable
Computing, Fitting and Validating the PPS Distribution
parfm
Parametric Frailty Models
parfossil
Parallelized functions for palaeoecological and palaeogeographical analysis
parma
Portfolio Allocation and Risk Management Applications
parmigene
Parallel Mutual Information estimation for Gene Network reconstruction.
PARSE
Model-Based Clustering with Regularization Methods for High-Dimensional Data
parsec
Partial Orders in Socio-Economics
parsedate
Recognize and Parse Dates in Various Formats, Including All ISO 8601 Formats
partDSA
Partitioning Using Deletion, Substitution, and Addition Moves
partialAR
Partial Autoregression
partialOR
Partial Odds Ratio
partitionMap
Partition Maps
partitionMetric
Compute a distance metric between two partitions of a set
partitions
Additive Partitions of Integers
partools
Tools for the 'Parallel' Package
partsm
Periodic Autoregressive Time Series Models
party
A Laboratory for Recursive Partytioning
partykit
A Toolkit for Recursive Partytioning
parviol
Parviol
PAS
Polygenic Analysis System (PAS)
PASenseWear
Summarize Daily Physical Activity from 'SenseWear' Accelerometer Data
Pasha
Preprocessing of Aligned Sequences from HTS Analyses
pass
Prediction and Stability Selection of Tuning Parameters
password
Create Random Passwords
pastecs
Package for Analysis of Space-Time Ecological Series
pastis
Phylogenetic Assembly with Soft Taxonomic Inferences
PASWR
PROBABILITY and STATISTICS WITH R
PASWR2
Probability and Statistics with R, Second Edition
patchDVI
Package to Patch .dvi or .synctex Files
patchPlot
Scatterplots of image patches
patchSynctex
Communication Between Editor and Viewer for Literate Programs
PATHChange
A Tool for Identification of Differentially Expressed Pathways using Multi-Statistic Comparison
pathClass
Classification using biological pathways as prior knowledge
pathdiagram
Basic functions for drawing path diagrams
pathmox
Pathmox Approach of Segmentation Trees in Partial Least Squares Path Modeling
pathological
Path Manipulation Utilities
PathSelectMP
Backwards Variable Selection for Paths using M Plus
patPRO
Visualizing Temporal Microbiome Data
PatternClass
Class-Focused Pattern Metric Comparisons using Simulation
pauwels2014
Bayesian Experimental Design for Systems Biology.
pavo
Perceptual Analysis, Visualization and Organization of Spectral Color Data in R
pawacc
Physical activity with accelerometers
PAWL
Implementation of the PAWL algorithm
pbapply
Adding Progress Bar to '*apply' Functions
pbatR
P2BAT
PBD
Protracted Birth-Death Model of Diversification
pbdBASE
Programming with Big Data -- Base Wrappers for Distributed Matrices
pbdDEMO
Programming with Big Data -- Demonstrations and Examples Using 'pbdR' Packages
pbdDMAT
'pbdR' Distributed Matrix Methods
pbdMPI
Programming with Big Data -- Interface to MPI
pbdNCDF4
Programming with Big Data -- Interface to Parallel Unidata NetCDF4 Format Data Files
pbdPROF
Programming with Big Data --- MPI Profiling Tools
pbdSLAP
Programming with Big Data -- Scalable Linear Algebra Packages
pbdZMQ
Programming with Big Data -- Interface to ZeroMQ
PBIBD
Partially Balanced Incomplete Block Designs
PBImisc
A Set of Datasets Used in My Classes or in the Book 'Modele Liniowe i Mieszane w R, Wraz z Przykladami w Analizie Danych'
pbivnorm
Vectorized Bivariate Normal CDF
pbkrtest
Parametric Bootstrap and Kenward Roger Based Methods for Mixed Model Comparison
pbmcapply
Tracking the Progress of Mc*pply with Progress Bar
pbo
Probability of Backtest Overfitting
pBrackets
Plot Brackets
pbs
Periodic B Splines
PBSadmb
ADMB for R Using Scripts or GUI
PBSddesolve
Solver for Delay Differential Equations
PBSmapping
Mapping Fisheries Data and Spatial Analysis Tools
PBSmodelling
GUI Tools Made Easy: Interact with Models and Explore Data
pca3d
Three Dimensional PCA Plots
PCA4TS
Segmenting Multiple Time Series by Contemporaneous Linear Transformation
pcaBootPlot
Create 2D Principal Component Plots with Bootstrapping
pcadapt
Fast Principal Component Analysis for Outlier Detection
pcaL1
Three L1-Norm PCA Methods
pcalg
Methods for Graphical Models and Causal Inference
PCAmixdata
Multivariate Analysis of Mixed Data
pcaPA
Parallel Analysis for Ordinal and Numeric Data using Polychoric and Pearson Correlations with S3 Classes
pcaPP
Robust PCA by Projection Pursuit
pcdpca
Dynamic Principal Components for Periodically Correlated Functional Time Series
PCDSpline
Semiparametric regression analysis of panel count data using monotone splines
pcev
Principal Component of Explained Variance
pcg
Preconditioned Conjugate Gradient Algorithm for solving Ax=b
PCGSE
Principal Component Gene Set Enrichment
pch
Piecewise Constant Hazards Models for Censored and Truncated Data
PCICt
Implementation of POSIXct work-alike for 365 and 360 day calendars.
pcIRT
IRT Models for Polytomous and Continuous Item Responses
PCIT
Partial Correlation Coefficient with Information Theory
pcnetmeta
Patient-Centered Network Meta-Analysis
pco
Panel Cointegration Tests
PCovR
Principal Covariates Regression
PCPS
Principal Coordinates of Phylogenetic Structure
pcrcoal
Implementing the Coalescent Approach to PCR Simulation Developed by Weiss and Von Haeseler (NAR, 1997)
pcrsim
Simulation of the Forensic DNA Process
PCS
Calculate the probability of correct selection (PCS)
pcse
Panel-Corrected Standard Error Estimation in R
PCSinR
Parallel Constraint Satisfaction Networks in R
pdc
Permutation Distribution Clustering
pdfCluster
Cluster analysis via nonparametric density estimation
pdfetch
Fetch Economic and Financial Time Series Data from Public Sources
pdftables
Programmatic Conversion of PDF Tables
pdftools
Text Extraction and Rendering of PDF Documents
pdist
Partitioned Distance Function
PDM
Photogrammetric Distances Measurer
pdmod
Proximal/distal modeling framework for Pavlovian conditioning phenomena
pdolsms
Panel Dynamic OLS Estimation of Cointegrating Vectors
pdp
Partial Dependence Plots
PdPDB
Pattern Discovery in PDB Structures of Metalloproteins
PDQutils
PDQ Functions via Gram Charlier, Edgeworth, and Cornish Fisher Approximations
pdR
Threshold Model and Unit Root Tests in Panel Data
PDSCE
Positive definite sparse covariance estimators
Peacock.test
Two and Three Dimensional Kolmogorov-Smirnov Two-Sample Tests
peacots
Periodogram Peaks in Correlated Time Series
peakPick
Peak Picking Methods Inspired by Biological Data
peakRAM
Monitor the Total and Peak RAM Used by an Expression or Function
Peaks
Peaks
pear
Package for Periodic Autoregression Analysis
pearson7
Maximum Likelihood Inference for the Pearson VII Distribution with Shape Parameter 3/2
PearsonDS
Pearson Distribution System
PearsonICA
Independent component analysis using score functions from the Pearson system
pec
Prediction Error Curves for Risk Prediction Models in Survival Analysis
pedantics
Functions to facilitate power and sensitivity analyses for genetic studies of natural populations
PedCNV
An implementation for association analysis with CNV data.
pedgene
Gene-Level Statistics for Pedigree Data
pedigree
Pedigree functions
pedigreemm
Pedigree-based mixed-effects models
pedometrics
Pedometric Tools and Techniques
pegas
Population and Evolutionary Genetics Analysis System
PEGroupTesting
Population Proportion Estimation using Group Testing
PEIP
Geophysical Inverse Theory and Optimization
PEMM
A Penalized EM algorithm incorporating missing-data mechanism
pems.utils
Portable Emissions (and Other Mobile) Measurement System Utilities
penalized
L1 (Lasso and Fused Lasso) and L2 (Ridge) Penalized Estimation in GLMs and in the Cox Model
penalizedLDA
Penalized Classification using Fisher's Linear Discriminant
penalizedSVM
Feature Selection SVM using penalty functions
pencopula
Flexible Copula Density Estimation with Penalized Hierarchical B-Splines
PenCoxFrail
Regularization in Cox Frailty Models
pendensity
Density Estimation with a Penalized Mixture Approach
penDvine
Flexible Pair-Copula Estimation in D-Vines using Bivariate Penalized Splines
penMSM
Estimating Regularized Multi-state Models Using L1 Penalties
pensim
Simulation of high-dimensional data and parallelized repeated penalized regression
peperr
Parallelised Estimation of Prediction Error
peplib
Peptide Library Analysis Methods
PepPrep
Insilico peptide mutation, digestion and homologous comparison.
PepSAVIms
PepSAVI-MS Data Analysis
peptider
Evaluation of Diversity in Nucleotide Libraries
Peptides
Calculate Indices and Theoretical Properties of Protein Sequences
pequod
Moderated Regression Package
perARMA
Periodic Time Series Analysis
Perc
Using Percolation and Conductance to Find Information Flow Certainty in a Direct Network
perccal
Implementing Double Bootstrap Linear Regression Confidence Intervals Using the 'perc-cal' Method
PerFit
Person Fit
PerfMeas
PerfMeas: Performance Measures for ranking and classification tasks
PerformanceAnalytics
Econometric tools for performance and risk analysis
performanceEstimation
An Infra-Structure for Performance Estimation of Predictive Models
pergola
Toolbox for Polyploid Genetic Data
perm
Exact or Asymptotic permutation tests
PermAlgo
Permutational Algorithm to Simulate Survival Data
PerMallows
Permutations and Mallows Distributions
permGPU
Using GPUs in Statistical Genomics
permPATH
Permutation Based Gene Expression Pathway Analysis
permubiome
A Permutation Based Test for Biomarker Discovery in Microbiome Data
permutations
Permutations of a Finite Set
permute
Functions for Generating Restricted Permutations of Data
perry
Resampling-based prediction error estimation for regression models
persiandictionary
English to Persian dictionary
PersomicsArray
Automated Persomics Array Image Extraction
personograph
Pictographic Representation of Treatment Effects
perspectev
Permutation of Species During Turnover Events
perturb
Tools for evaluating collinearity
pesticides
Analysis of single serving and composite pesticide residue measurements
PET
Simulation and Reconstruction of PET Images
pETM
Penalized Exponential Tilt Model
petrinetR
Building, Visualizing, Exporting and Replaying Petri Nets
pewdata
Reproducible Retrieval of Pew Research Center Datasets
pez
Phylogenetics for the Environmental Sciences
pfa
Estimates False Discovery Proportion Under Arbitrary Covariance Dependence
pgam
Poisson-Gamma Additive Models.
PGEE
Penalized Generalized Estimating Equations in High-Dimension
PGICA
Parallel Group ICA Algorithm
pgirmess
Data Analysis in Ecology
pglm
panel generalized linear model
pGLS
Generalized Least Square in comparative Phylogenetics
PGM2
Recursive method for construction of nested resolvable designs and uniform designs associated
pGMGM
Estimating Multiple Gaussian Graphical Models (GGM) in Penalized Gaussian Mixture Models (GMM)
pgmm
Parsimonious Gaussian Mixture Models
pgnorm
The p-Generalized Normal Distribution
pgraph
Build Dependency Graphs using Projection
PGRdup
Discover Probable Duplicates in Plant Genetic Resources Collections
pgs
Precision of Geometric Sampling
ph2bayes
Bayesian Single-Arm Phase II Designs
ph2bye
Phase II Clinical Trial Design Using Bayesian Methods
ph2mult
Phase II Clinical Trial Design for Multinomial Endpoints
phalen
Phalen Algorithms and Functions
phangorn
Phylogenetic Analysis in R
PharmacoGx
Analysis of Large-Scale Pharmacogenomic Data
PharmPow
Pharmacometric Power calculations for mixed study designs
phaseR
Phase Plane Analysis of One and Two Dimensional Autonomous ODE Systems
PhaseType
Inference for Phase-type Distributions
phcfM
Modelling anthropogenic deforestation
pheatmap
Pretty Heatmaps
phenability
Nonparametric Stability Analysis
phenex
Auxiliary Functions for Phenological Data Analysis
PHENIX
Phenotypic Integration Index
phenmod
Auxiliary functions for phenological data processing, modelling and result handling
pheno
Auxiliary functions for phenological data analysis
pheno2geno
High-Throughput Generation of Genetic Markers and Maps from Molecular Phenotypes for Crosses Between Inbred Strains
phenology
Tools to Manage a Parametric Function that Describes Phenology
PHeval
Evaluation of the Proportional Hazards Assumption with a Standardized Score Process
phia
Post-Hoc Interaction Analysis
phmm
Proportional Hazards Mixed-effects Model (PHMM)
phonenumber
Convert Letters to Numbers and Back as on a Telephone Keypad
phonics
Phonetic Spelling Algorithms
phonR
Tools for Phoneticians and Phonologists
phonTools
Tools for Phonetic and Acoustic Analyses
photobiology
Photobiological Calculations
photobiologyInOut
Read Spectral and Logged Data from Foreign Files
photobiologyLamps
Spectral Data of Light Emission by Lamps
photobiologyLEDs
Spectral Data for Light-Emitting-Diodes
photobiologyPlants
Plant 'Photobiology' Related Functions and Data
photobiologyWavebands
Waveband Definitions for 'UV', 'VIS', and 'IR' Radiation
phrasemachine
Simple Phrase Extraction
phreeqc
R Interface to Geochemical Modeling Software
phtt
Panel Data Analysis with Heterogeneous Time Trends
phuassess
Proportional Habitat Use Assessment
PhViD
PharmacoVigilance Signal Detection
Phxnlme
Run Phoenix NLME and Perform Post-Processing
PhyActBedRest
Marks periods of sleep in Actigraph accelerometer data
phybreak
Analysis of Outbreaks with Sequence Data
phyclust
Phylogenetic Clustering (Phyloclustering)
phyext2
An Extension (for Package 'SigTree') of Some of the Classes in Package 'phylobase'
PhyInformR
Rapid Calculation of Phylogenetic Information Content
phylin
Spatial Interpolation of Genetic Data
phylobase
Base Package for Phylogenetic Structures and Comparative Data
phyloclim
Integrating Phylogenetics and Climatic Niche Modeling
phylocurve
Phylogenetic Comparative Methods for High-Dimensional Traits
PHYLOGR
Functions for Phylogenetically Based Statistical Analyses
phyloland
Modelling Competitive Exclusion and Limited Dispersal in a Statistical Phylogeographic Framework
phylolm
Phylogenetic Linear Regression
PhyloMeasures
Fast and Exact Algorithms for Computing Phylogenetic Biodiversity Measures
phylometrics
Estimating Statistical Errors of Phylogenetic Metrics
phylopath
Perform Phylogenetic Path Analysis
phylosignal
Exploring the Phylogenetic Signal in Continuous Traits
phylosim
Flexible Simulations of Biological Sequence Evolution
phylotools
Phylogenetic tools for Eco-phylogenetics
phyloTop
Calculating Topological Properties of Phylogenies
phyndr
Matches Tip and Trait Data
phyreg
Implements the Phylogenetic Regression of Grafen (1989)
PhysActBedRest
Marks Periods of 'Bedrest' in Actigraph Accelerometer Data
PhysicalActivity
Process Physical Activity Accelerometer Data
physiology
Calculate Physiological Characteristics of Adults and Children
PhySortR
A Fast, Flexible Tool for Sorting Phylogenetic Trees
phytools
Phylogenetic Tools for Comparative Biology (and Other Things)
phytotools
Phytoplankton Production Tools
pi0
Estimating the Proportion of True Null Hypotheses for FDR
picante
R tools for integrating phylogenies and ecology
picasso
Pathwise Calibrated Sparse Shooting Algorithm
pid
Process Improvement using Data
piecewiseSEM
Piecewise Structural Equation Modeling
PIGE
Self contained gene set analysis for gene- and pathway-environment interaction analysis
PIGShift
Polygenic Inverse Gamma Shifts
Pijavski
Global Univariate Minimization
pim
Fit Probabilistic Index Models
pinbasic
Fast and Stable Estimation of the Probability of Informed Trading (PIN)
pinfsc50
Sequence ('FASTA'), Annotation ('GFF') and Variants ('VCF') for 17 Samples of 'P. Infestans" and 1 'P. Mirabilis'
pingr
Check If a Remote Computer is Up
pinnacle.API
A Wrapper for the Pinnacle Sports API
pipe.design
Dual-Agent Dose Escalation for Phase I Trials using the PIPE Design
pipefittr
Convert Nested Functions to Pipes
pipeGS
Permutation p-Value Estimation for Gene Set Tests
pipeR
Multi-Paradigm Pipeline Implementation
PIPS
Predicted Interval Plots
pirate
Generated Effect Modifier
pitchRx
Tools for Harnessing 'MLBAM' 'Gameday' Data and Visualizing 'pitchfx'
PivotalR
A Fast, Easy-to-Use Tool for Manipulating Tables in Databases and a Wrapper of MADlib
pixiedust
Tables so Beautifully Fine-Tuned You Will Believe It's Magic
pixmap
Bitmap Images (``Pixel Maps'')
PK
Basic Non-Compartmental Pharmacokinetics
pkgconfig
Private Configuration for 'R' Packages
pkgcopier
Copy Local R Packages to Another Environment
pkgKitten
Create Simple Packages Which Do not Upset R Package Checks
pkgmaker
Package development utilities
PKgraph
Model diagnostics for population pharmacokinetic models
PKI
Public Key Infrastucture for R Based on the X.509 Standard
pkmon
Least-Squares Estimator under k-Monotony Constraint for Discrete Functions
PKNCA
Perform Pharmacokinetic Non-Compartmental Analysis
PKPDmodels
Pharmacokinetic/pharmacodynamic models
PKreport
A reporting pipeline for checking population pharmacokinetic model assumption
pks
Probabilistic Knowledge Structures
pla
Parallel Line Assays
plac
A Pairwise Likelihood Augmented Cox Estimator for Left-Truncated Data
placement
Tools for Accessing the Google Maps API
plan
Tools for project planning
planar
Multilayer Optics
Planesmuestra
Functions for Calculating Dodge Romig, MIL STD 105E and MIL STD 414 Acceptance Sampling Plan
planor
Generation of Regular Factorial Designs
plantecophys
Modelling and Analysis of Leaf Gas Exchange Data
plaqr
Partially Linear Additive Quantile Regression
PlasmaMutationDetector
Tumor Mutation Detection in Plasma
plater
Read, Tidy, and Display Data from Microtiter Plates
platetools
Tools and Plots for Multi-Well Plates
PlayerRatings
Dynamic Updating Methods for Player Ratings Estimation
playwith
A GUI for interactive plots using GTK+
pleio
Pleiotropy Test for Multiple Traits on a Genetic Marker
plfm
Probabilistic Latent Feature Analysis
plfMA
A GUI to View, Design and Export Various Graphs of Data
plgp
Particle Learning of Gaussian Processes
PLIS
Multiplicity control using Pooled LIS statistic
plm
Linear Models for Panel Data
plmDE
Additive partially linear models for differential gene expression analysis
plmm
Partially Linear Mixed Effects Model
pln
Polytomous logit-normit (graded logistic) model estimation
plogr
The 'plog' C++ Logging Library
PLordprob
Multivariate Ordered Probit Model via Pairwise Likelihood
plot3D
Plotting Multi-Dimensional Data
plot3Drgl
Plotting Multi-Dimensional Data - Using 'rgl'
plotfunctions
Various Functions to Facilitate Visualization of Data and Analysis
plotGoogleMaps
Plot Spatial or Spatio-Temporal Data Over Google Maps
plotKML
Visualization of Spatial and Spatio-Temporal Objects in Google Earth
plotluck
'ggplot2' Version of "I'm Feeling Lucky!"
plotly
Create Interactive Web Graphics via 'plotly.js'
plotMCMC
MCMC Diagnostic Plots
plotMElm
Plot Marginal Effects from Linear Models
plotmo
Plot a Model's Response and Residuals
plotpc
Plot Principal Component Histograms Around a Scatter Plot
PlotPrjNetworks
Useful Networking Tools for Project Management
PlotRegionHighlighter
Creates an envelope that surrounds a set of points plotted in a two dimensional space.
plotrix
Various Plotting Functions
plotROC
Generate Useful ROC Curve Charts for Print and Interactive Use
plotSEMM
Graphing Nonlinear Relations Among Latent Variables from Structural Equation Mixture Models
plotwidgets
Spider Plots, ROC Curves, Pie Charts and More for Use in Other Plots
plRasch
Log Linear by Linear Association models and Rasch family models by pseudolikelihood estimation
PLRModels
Statistical inference in partial linear regression models
pls
Partial Least Squares and Principal Component Regression
PLSbiplot1
The Partial Least Squares (PLS) Biplot
plsdepot
Partial Least Squares (PLS) Data Analysis Methods
plsdof
Degrees of Freedom and Statistical Inference for Partial Least Squares Regression
plsgenomics
PLS Analyses for Genomics
plspm
Tools for Partial Least Squares Path Modeling (PLS-PM)
plspm.formula
Formula Based PLS Path Modeling
plspolychaos
Sensitivity Indexes from Polynomial Chaos Expansions and PLS
plsRbeta
Partial Least Squares Regression for Beta Regression Models
plsRcox
Partial Least Squares Regression for Cox Models and Related Techniques
plsRglm
Partial Least Squares Regression for Generalized Linear Models
plsVarSel
Variable Selection in Partial Least Squares
plugdensity
Plug-in Kernel Density Estimation
plumber
An API Generator for R
plumbr
Mutable and dynamic data models
plus
Penalized Linear Unbiased Selection
plusser
A Google+ Interface for R
plyr
Tools for Splitting, Applying and Combining Data
PMA
Penalized Multivariate Analysis
pmc
Phylogenetic Monte Carlo
pmcgd
pmcgd
pmclust
Parallel Model-Based Clustering using Expectation-Gathering-Maximization Algorithm for Finite Mixture Gaussian Model
PMCMR
Calculate Pairwise Multiple Comparisons of Mean Rank Sums
pmg
Poor Man's GUI
pmhtutorial
Minimal Working Examples for Particle Metropolis-Hastings
pMineR
Processes Mining in Medicine
pmlr
Penalized Multinomial Logistic Regression
pmml
Generate PMML for Various Models
pmmlTransformations
Transforms Input Data from a PMML Perspective
pmr
Probability Models for Ranking Data
png
Read and write PNG images
pnmtrem
Probit-Normal Marginalized Transition Random Effects Models
pnn
Probabilistic neural networks
pocrm
Dose Finding in Drug Combination Phase I Trials Using PO-CRM
POET
Principal Orthogonal ComplEment Thresholding (POET) Method
pogit
Bayesian Variable Selection for a Poisson-Logistic Model
PogromcyDanych
PogromcyDanych / DataCrunchers is the Masive Online Open Course that Brings R and Statistics to the People
poibin
The Poisson Binomial Distribution
PoiClaClu
Classification and clustering of sequencing data based on a Poisson model
poilog
Poisson lognormal and bivariate Poisson lognormal distribution
pointdensityP
Point Density for Geospatial Data
pointRes
Analyzing Pointer Years and Components of Resilience
poio
Input/Output Functionality for "PO" and "POT" Message Translation Files
PoisBinNonNor
Data Generation with Poisson, Binary and Continuous Components
PoisBinOrd
Data Generation with Poisson, Binary and Ordinal Components
PoisBinOrdNonNor
Generation of Up to Four Different Types of Variables
PoisBinOrdNor
Data Generation with Poisson, Binary, Ordinal and Normal Components
poisDoubleSamp
Confidence Intervals with Poisson Double Sampling
PoisNonNor
Simultaneous Generation of Count and Continuous Data
PoisNor
Simultaneous Generation of Multivariate Data with Poisson and Normal Marginals
poisson
Simulating Homogenous & Non-Homogenous Poisson Processes
poisson.glm.mix
Fit high dimensional mixtures of Poisson GLMs
PoissonSeq
Significance analysis of sequencing data based on a Poisson log linear model
poistweedie
Poisson-Tweedie exponential family models
poLCA
Polytomous variable Latent Class Analysis
polidata
Political Data Interface in R
poliscidata
Datasets and Functions Featured in Pollock and Edwards R Companion to Essential of Political Analysis
pollen
Tools for Working with Aerobiological Data
pollstR
Client for the HuffPost Pollster API
polmineR
Toolset for Corpus Analysis
polspline
Polynomial Spline Routines
polyaAeppli
Implementation of the Polya-Aeppli distribution
polyapost
Simulating from the Polya Posterior
polychaosbasics
Sensitivity Indexes Calculated from Polynomial Chaos Expansions
polyclip
Polygon Clipping
polycor
Polychoric and Polyserial Correlations
polyCub
Cubature over Polygonal Domains
polyfreqs
Bayesian Population Genomics in Autopolyploids
polynom
A Collection of Functions to Implement a Class for Univariate Polynomial Manipulations
PolynomF
Polynomials in R
PolyPatEx
Paternity Exclusion in Autopolyploid Species
polysat
Tools for Polyploid Microsatellite Analysis
polySegratio
Simulate and test marker dosage for dominant markers in autopolyploids
polySegratioMM
Bayesian mixture models for marker dosage in autopolyploids
PolyTrend
Trend Classification Algorithm
polywog
Bootstrapped Basis Regression with Oracle Model Selection
pom
POM - Patch Occupancy Models
Pomic
Pattern Oriented Modelling Information Criterion
pomp
Statistical Inference for Partially Observed Markov Processes
pooh
Partial Orders and Relations
pop
A Flexible Syntax for Population Dynamic Modelling
popbio
Construction and Analysis of Matrix Population Models
popdemo
Demographic Modelling Using Projection Matrices
PopED
Population (and Individual) Optimal Experimental Design
popEpi
Functions for Epidemiological Analysis using Population Data
PopGenKit
Useful functions for (batch) file conversion and data resampling in microsatellite datasets
PopGenome
An Efficient Swiss Army Knife for Population Genomic Analyses
PopGenReport
A Simple Framework to Analyse Population Genetic Data
popgraph
This is an R package that constructs and manipulates population graphs.
popKorn
For interval estimation of mean of selected populations
poplite
Tools for Simplifying the Population and Querying of SQLite Databases
poppr
Genetic Analysis of Populations with Mixed Reproduction
popprxl
Read GenAlEx Files Directly from Excel
popRange
popRange: A spatially and temporally explicit forward genetic simulator
popReconstruct
Reconstruct Human Populations of the Recent Past
popsom
Functions for Constructing and Evaluating Self-Organizing Maps
population
Models for Simulating Populations
PopVar
Genomic Breeding Tools: Genetic Variance Prediction and Cross-Validation
pop.wolf
Models for Simulating Wolf Populations
portes
Portmanteau Tests for Univariate and Multivariate Time Series Models
portfolio
Analysing equity portfolios
PortfolioAnalytics
Portfolio Analysis, Including Numerical Methods for Optimization of Portfolios
PortfolioEffectEstim
High Frequency Price Estimators by PortfolioEffect
PortfolioEffectHFT
High Frequency Portfolio Analytics by PortfolioEffect
portfolioSim
Framework for simulating equity portfolio strategies
PortRisk
Portfolio Risk Analysis
postGIStools
Tools for Interacting with 'PostgreSQL' / 'PostGIS' Databases
POT
Generalized Pareto Distribution and Peaks Over Threshold
potts
Markov Chain Monte Carlo for Potts Models
PottsUtils
Utility Functions of the Potts Models
powell
Powell's UObyQA algorithm
PoweR
Computation of Power and Level Tables for Hypothesis Tests
Power2Stage
Power and Sample-Size Distribution of 2-Stage Bioequivalence Studies
powerAnalysis
Power analysis in experimental design.
powerbydesign
Power Estimates for ANOVA Designs
powerGWASinteraction
Power Calculations for GxE and GxG Interactions for GWAS
poweRlaw
Analysis of Heavy Tailed Distributions
powerMediation
Power/Sample Size Calculation for Mediation Analysis
powerpkg
Power analyses for the affected sib pair and the TDT design
powerplus
Exponentiation Operations
powerSurvEpi
Power and Sample Size Calculation for Survival Analysis of Epidemiological Studies
PowerTOST
Power and Sample Size Based on Two One-Sided t-Tests (TOST) for (Bio)Equivalence Studies
PowerUpR
Power Analysis Tools for Individual/Cluster Randomized Trials
PP
Person Parameter estimation
ppcor
Partial and Semi-Partial (Part) Correlation
ppiPre
Predict Protein-Protein Interactions Based on Functional and Topological Similarities
ppls
Penalized Partial Least Squares
ppmlasso
Point Process Models with LASSO Penalties
pps
Functions for PPS sampling
PPtree
Projection pursuit classification tree
PPtreeViz
Projection Pursuit Classification Tree Visualization
pqantimalarials
web tool for estimating under-five deaths caused by poor-quality antimalarials in sub-Saharan Africa
prabclus
Functions for Clustering of Presence-Absence, Abundance and Multilocus Genetic Data
pracma
Practical Numerical Math Functions
PracTools
Tools for Designing and Weighting Survey Samples
pragma
Provides a pragma / directive / keyword syntax for R.
prais
Prais-Winsten Estimation Procedure for AR(1) Serial Correlation
praise
Praise Users
praktikum
Kvantitatiivsete meetodite praktikumi asjad / Functions used in the course "Quantitative methods in behavioural sciences" (SHPH.00.004), University of Tartu
prc
Paired Response Curve
prcbench
Testing Workbench for Precision-Recall Curves
prclust
Penalized Regression-Based Clustering Method
precintcon
Precipitation Intensity, Concentration and Anomaly Analysis
precrec
Calculate Accurate Precision-Recall and ROC (Receiver Operator Characteristics) Curves
PredictABEL
Assessment of Risk Prediction Models
prediction
Tidy, Type-Safe 'prediction()' Methods
predictionInterval
Prediction Interval Functions for Assessing Replication Study Results
PredictiveRegression
Prediction Intervals for Three Basic Statistical Models
predictmeans
Calculate Predicted Means for Linear Models
PredictTestbench
Test Bench for Comparison of Data Prediction Models
predmixcor
Classification rule based on Bayesian mixture models with feature selection bias corrected
prefmod
Utilities to Fit Paired Comparison Models for Preferences
PreKnitPostHTMLRender
Pre-Knitting Processing and Post HTML-Rendering Processing
PReMiuM
Dirichlet Process Bayesian Clustering, Profile Regression
prepdat
Preparing Experimental Data for Statistical Analysis
preprocomb
Tools for Preprocessing Combinations
preprosim
Lightweight Data Quality Simulation for Classification
preproviz
Tools for Visualization of Interdependent Data Quality Issues
prereg
R Markdown Templates to Preregister Scientific Studies
PresenceAbsence
Presence-Absence Model Evaluation.
presens
Interface for PreSens Fiber Optic Data
preseqR
Predicting Species Accumulation Curves
PResiduals
Probability-Scale Residuals and Residual Correlations
preText
Diagnostics to Assess the Effects of Text Preprocessing Decisions
prettydoc
Creating Pretty Documents from R Markdown
prettyGraphs
publication-quality graphics.
prettymapr
Scale Bar, North Arrow, and Pretty Margins in R
prettyR
Pretty Descriptive Stats
prettyunits
Pretty, Human Readable Formatting of Quantities
prevalence
Tools for Prevalence Assessment Studies
PrevMap
Geostatistical Modelling of Spatially Referenced Prevalence Data
prevR
Estimating Regional Trends of a Prevalence from a DHS
pRF
Permutation Significance for Random Forests
prim
Patient Rule Induction Method (PRIM)
primefactr
Use Prime Factorization for Computations
primer
Functions and data for A Primer of Ecology with R
primerTree
Visually Assessing the Specificity and Informativeness of Primer Pairs
primes
Generate and Test for Prime Numbers
PRIMsrc
PRIM Survival Regression Classification
princurve
Fits a Principal Curve in Arbitrary Dimension
prinsimp
Finding and plotting simple basis vectors for multivariate data
prioritizr
Systematic Conservation Prioritization in R
prism
Access Data from the Oregon State Prism Climate Project
PRISMA
Protocol Inspection and State Machine Analysis
PRISMAstatement
Plot Flow Charts According to the "PRISMA" Statement
PrivateLR
Differentially Private Regularized Logistic Regression
prLogistic
Estimation of Prevalence Ratios using Logistic Models
pro
Point-Process Response Model for Optogenetics
prob
Elementary Probability on Finite Sample Spaces
probemod
Statistical Tools for Probing Moderation Effects
probFDA
Probabilistic Fisher Discriminant Analysis
ProbForecastGOP
Probabilistic weather forecast using the GOP method
ProbitSpatial
Probit with Spatial Dependence, SAR and SEM Models
probsvm
probsvm: Class probability estimation for Support Vector Machines
ProbYX
Inference for the Stress-Strength Model R = P(Y<X)
pROC
Display and Analyze ROC Curves
proccalibrad
Extraction of Bands from MODIS Calibrated Radiances MOD02 NRT
processcontrol
Statistical Process Control Charts
ProDenICA
Product Density Estimation for ICA using tilted Gaussian density estimates
prodigenr
Research Project Directory Generator
prodlim
Product-Limit Estimation for Censored Event History Analysis
productivity
Indices of Productivity Using Data Envelopment Analysis (DEA)
productplots
Product Plots for R
PROFANCY
The package can prioritize candidate disease metabolites based on global functional relationships between metabolites in the context of metabolic pathways
profdpm
Profile Dirichlet Process Mixtures
ProfessR
Grades Setting and Exam Maker
ProfileLikelihood
Profile Likelihood for a Parameter in Commonly Used Statistical Models
profileModel
Tools for profiling inference functions for various model classes
profileR
Profile Analysis of Multivariate Data in R
profilr
Quickly Profile Data in R
ProFit
Fit Projected 2D Profiles to Galaxy Images
profmem
Simple Memory Profiling for R
profr
An alternative display for profiling information
proftools
Profile Output Processing Tools for R
prof.tree
An Alternative Display Profiling Data as Tree Structure
profvis
Interactive Visualizations for Profiling R Code
progenyClust
Finding the Optimal Cluster Number Using Progeny Clustering
ProgGUIinR
support package for "Programming Graphical User Interfaces in R"
prognosticROC
Prognostic ROC curves for evaluating the predictive capacity of a binary test
progress
Terminal Progress Bars
proj4
A simple interface to the PROJ.4 cartographic projections library
ProjectTemplate
Automates the Creation of New Statistical Analysis Projects
ProNet
Biological Network Construction, Visualization and Analyses
propagate
Propagation of Uncertainty
PropCIs
Various confidence interval methods for proportions
PropClust
Propensity Clustering and Decomposition
prop.comb.RR
Analyzing Combination of Proportions and Relative Risk
properties
Parse Java Properties Files for R Service Bus Applications
proportion
Inference on Single Binomial Proportion and Bayesian Computations
propOverlap
Feature (gene) selection based on the Proportional Overlapping Scores
propr
Calculating Proportionality Between Vectors of Compositional Data
PropScrRand
Propensity score methods for assigning treatment in randomized trials
prospectr
Miscellaneous functions for processing and sample selection of vis-NIR diffuse reflectance data
ProteinDescriptors
Generates Various Protein Descriptors for Machine Learning Algorithms
proteomicdesign
Optimization of a multi-stage proteomic study
proteomics
Statistical Analysis of High Throughput Proteomics Data
protiq
Protein (identification and) quantification based on peptide evidence
proto
Prototype Object-Based Programming
protoclass
Interpretable classification with prototypes
protoclust
Hierarchical Clustering with Prototypes
PROTOLIDAR
PRocess TOol LIdar DAta in R
protolite
Fast and Simple Object Serialization to Protocol Buffers
proton
The Proton Game
prototest
Inference on Prototypes from Clusters of Features
protr
Generating Various Numerical Representation Schemes of Protein Sequence
ProTrackR
Manipulate and Play 'ProTracker' Modules
protViz
Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
provenance
Statistical Toolbox for Sedimentary Provenance Analysis
proxy
Distance and Similarity Measures
prozor
Minimal Protein Set Explaining Peptide Spectrum Matches
PRROC
Precision-Recall and ROC Curves for Weighted and Unweighted Data
pRSR
Test of Periodicity using Response Surface Regression
pryr
Tools for Computing on the Language
Przewodnik
Datasets and Functions Used in the Book 'Przewodnik po Pakiecie R'
PSAboot
Bootstrapping for Propensity Score Analysis
PSAgraphics
Propensity Score Analysis Graphics
psbcGroup
Penalized Parametric and Semiparametric Bayesian Survival Models with Shrinkage and Grouping Priors
PSCBS
Analysis of Parent-Specific DNA Copy Numbers
pscl
Political Science Computational Laboratory, Stanford University
pscore
Standardizing Physiological Composite Risk Endpoints
psd
Adaptive, Sine-Multitaper Power Spectral Density Estimation
psData
Download Regularly Maintained Political Science Data Sets
pse
Parameter Space Exploration with Latin Hypercubes
pseudo
Pseudo - observations
pseval
Methods for Evaluating Principal Surrogates of Treatment Response
PSF
Forecasting of Univariate Time Series Using the Pattern Sequence-Based Forecasting (PSF) Algorithm
psgp
Projected Spatial Gaussian Process (psgp) methods
pSI
Specificity Index Statistic
psidR
Build Panel Data Sets from PSID Raw Data
PsiHat
Several Local False Discovery Rate Estimators
PSM
Non-Linear Mixed-Effects modelling using Stochastic Differential Equations.
pso
Particle Swarm Optimization
psoptim
Particle Swarm Optimization
pspearman
Spearman's rank correlation test
pspline
Penalized Smoothing Splines
pssm
Piecewise Exponential Model for Time to Progression and Time from Progression to Death
PST
Probabilistic Suffix Trees and Variable Length Markov Chains
pstest
Specification Tests for Parametric Propensity Score Models
PsumtSim
Simulations of grouped responses relative to baseline.
psy
Various procedures used in psychometry
psych
Procedures for Psychological, Psychometric, and Personality Research
psychometric
Applied Psychometric Theory
psychomix
Psychometric Mixture Models
psychotools
Infrastructure for Psychometric Modeling
psychotree
Recursive Partitioning Based on Psychometric Models
psyphy
Functions for analyzing psychophysical data in R
psytabs
Produce Well-Formatted Tables for Psychological Research
PTAk
Principal Tensor Analysis on k Modes
PTE
Personalized Treatment Evaluator
ptest
Periodicity Tests in Short Time Series
ptinpoly
Point-In-Polyhedron Test (2D and 3D)
PtProcess
Time Dependent Point Process Modelling
ptstem
Stemming Algorithms for the Portuguese Language
ptw
Parametric Time Warping
ptwikiwords
Words Used in Portuguese Wikipedia
PTXQC
Quality Report Generation for MaxQuant Results
ptycho
Bayesian Variable Selection with Hierarchical Priors
PubBias
Performs simulation study to look for publication bias, using a technique described by Ioannidis and Trikalinos; Clin Trials. 2007;4(3):245-53.
pubmed.mineR
Text Mining of PubMed Abstracts
PubMedWordcloud
PubMed Word Clouds
pubprint
Printing Results of Statistical Computing in a Publishable Way
pullword
R Interface to Pullword Service
pulsar
Parallel Utilities for Lambda Selection along a Regularization Path
pumilioR
Pumilio in R
PurBayes
Bayesian Estimation of Tumor Purity and Clonality
purge
Purge Training Data from Models
purrr
Functional Programming Tools
pushoverr
Send Push Notifications using Pushover
PVAClone
Population Viability Analysis with Data Cloning
pvar
Calculation and Application of p-Variation
pvclass
P-Values for Classification
pvclust
Hierarchical Clustering with P-Values via Multiscale Bootstrap Resampling
pvrank
Rank Correlations
pvsR
An R package to interact with the Project Vote Smart API for scientific research
PWD
Time Series Regression Using the Power Weighted Densities (PWD) Approach
pweight
P-Value Weighting
pwr
Basic Functions for Power Analysis
PwrGSD
Power in a Group Sequential Design
pwrRasch
Statistical Power Simulation for Testing the Rasch Model
pwt
Penn World Table (Versions 5.6, 6.x, 7.x)
pwt8
Penn World Table (Version 8.x)
pxR
PC-Axis with R
pxweb
R Interface to the PX-Web/PC-Axis API
pycno
Pycnophylactic Interpolation
pyramid
Functions to draw population pyramid
pystr
Python String Methods in R
PythonInR
Use Python from Within R
qap
Heuristics for the Quadratic Assignment Problem (QAP)
qat
Quality Assurance Toolkit
QCA
Qualitative Comparative Analysis
QCA3
Yet Another Package for Qualitative Comparative Analysis
QCAfalsePositive
Tests for Type I Error in Qualitative Comparative Analysis (QCA)
QCAGUI
Qualitative Comparative Analysis GUI
QCApro
Professional Functionality for Performing and Evaluating Qualitative Comparative Analysis
QCAtools
Helper Functions for QCA in R
qcc
Quality Control Charts
QCEWAS
Fast and Easy Quality Control of EWAS Results Files
QCGWAS
Quality Control of Genome Wide Association Study results
qclust
Robust Estimation of Gaussian Mixture Models
qcr
Quality Control Review
QCSimulator
A 5-Qubit Quantum Computing Simulator
QCSIS
Sure Independence Screening via Quantile Correlation and Composite Quantile Correlation
qdap
Bridging the Gap Between Qualitative Data and Quantitative Analysis
qdapDictionaries
Dictionaries and Word Lists for the 'qdap' Package
qdapRegex
Regular Expression Removal, Extraction, and Replacement Tools
qdapTools
Tools for the 'qdap' Package
qdm
Fitting a Quadrilateral Dissimilarity Model to Same-Different Judgments
QFASA
Quantitative Fatty Acid Signature Analysis
qfasar
Quantitative Fatty Acid Signature Analysis in R
QFRM
Pricing of Vanilla and Exotic Option Contracts
QGglmm
Estimate Quantitative Genetics Parameters from Generalised Linear Mixed Models
qgraph
Graph Plotting Methods, Psychometric Data Visualization and Graphical Model Estimation
qgtools
Tools for Quantitative Genetics Data Analyses
qha
Qualitative Harmonic Analysis
QICD
Estimate the Coefficients for Non-Convex Penalized Quantile Regression Model by using QICD Algorithm
qicharts
Quality Improvement Charts
qiimer
Work with QIIME Output Files in R
qiitr
R Interface to Qiita API
qlcData
Processing Data for Quantitative Language Comparison (QLC)
qlcMatrix
Utility Sparse Matrix Functions for Quantitative Language Comparison
qlcVisualize
Visualization for Quantitative Language Comparison (QLC)
qLearn
Estimation and inference for Q-learning
qmap
Statistical Transformations for Post-Processing Climate Model Output
qmethod
Analysis of Subjective Perspectives Using Q Methodology
qmrparser
Parser combinator in R
QNB
Differential RNA Methylation Analysis with Quad-Negative-Binomial Model
QoLR
Analysis of Health-Related Quality of Life in Oncology
qpcR
Modelling and analysis of real-time PCR data
qPCR.CT
qPCR data analysis and plot package
QPot
Quasi-Potential Analysis for Stochastic Differential Equations
qqman
Q-Q and manhattan plots for GWAS data
QQperm
Permutation Based QQ Plot and Inflation Factor Estimation
qqtest
Self Calibrating Quantile-Quantile Plots for Visual Testing
qqvases
Animated Normal Quantile-Quantile Plots
QRAGadget
A 'Shiny' Gadget for Interactive 'QRA' Visualizations
qrage
Tools that Create D3 JavaScript Force Directed Graph from R
qrcm
Quantile Regression Coefficients Modeling
qrcode
QRcode Generator for R
QRegVCM
Quantile Regression in Varying-Coefficient Models
qrencoder
Quick Response Code (QR Code) / Matrix Barcode Creator
qrfactor
Simultaneous simulation of Q and R mode factor analyses with Spatial data
qrjoint
Joint Estimation in Linear Quantile Regression
qrLMM
Quantile Regression for Linear Mixed-Effects Models
QRM
Provides R-Language Code to Examine Quantitative Risk Management Concepts
qrmdata
Data Sets for Quantitative Risk Management Practice
qrmtools
Tools for Quantitative Risk Management
qrng
(Randomized) Quasi-Random Number Generators
qrNLMM
Quantile Regression for Nonlinear Mixed-Effects Models
qrnn
Quantile Regression Neural Network
QSARdata
Quantitative Structure Activity Relationship (QSAR) Data Sets
qtbase
Interface Between R and Qt
qte
Quantile Treatment Effects
qtl
Tools for Analyzing QTL Experiments
qtlbook
Datasets for the R/qtl Book
qtlc
Densitometric Analysis of Thin-Layer Chromatography Plates
qtlcharts
Interactive Graphics for QTL Experiments
qtlDesign
Design of QTL experiments
qtlhot
Inference for QTL Hotspots
qtlmt
Tools for Mapping Multiple Complex Traits
qtlnet
Causal Inference of QTL Networks
QTLRel
Tools for Mapping of Quantitative Traits of Genetically Related Individuals and Calculating Identity Coefficients from Pedigrees
Qtools
Utilities for Quantiles
qtpaint
Qt-Based Painting Infrastructure
qtutils
Miscellaneous Qt-based utilities
QuACN
QuACN: Quantitative Analysis of Complex Networks
quad
Exact permutation moments of quadratic form statistics
quadmesh
Quadrangle Mesh
quadprog
Functions to solve Quadratic Programming Problems.
quadrupen
Sparsity by Worst-Case Quadratic Penalties
qualCI
Causal Inference with Qualitative and Ordinal Information on Outcomes
QualInt
Test for Qualitative Interactions
qualityTools
Statistical Methods for Quality Science
qualpalr
Automatic Generation of Qualitative Color Palettes
qualtRics
Download Qualtrics Survey Data Directly into R
qualV
Qualitative Validation Methods
qualvar
Implements Indices of Qualitative Variation Proposed by Wilcox (1973)
Quandl
API Wrapper for Quandl.com
quantable
Streamline Descriptive Analysis of Quantitative Data Matrices
quantchem
Quantitative chemical analysis: calibration and evaluation of results
quanteda
Quantitative Analysis of Textual Data
quantification
Quantification of Qualitative Survey Data
QuantifQuantile
Estimation of Conditional Quantiles using Optimal Quantization
quantileDA
Quantile Classifier
quantmod
Quantitative Financial Modelling Framework
QuantPsyc
Quantitative Psychology Tools
quantreg
Quantile Regression
quantregForest
Quantile Regression Forests
quantregGrowth
Growth Charts via Regression Quantiles
quantreg.nonpar
Nonparametric Series Quantile Regression
quantspec
Quantile-Based Spectral Analysis of Time Series
QuantTools
Enhanced Quantitative Trading Modelling
QuantumClone
Clustering Mutations using High Throughput Sequencing (HTS) Data
quarrint
Interaction Prediction Between Groundwater and Quarry Extension Using Discrete Choice Models and Artificial Neural Networks
QuasiSeq
Analyzing RNA Sequencing Count Tables Using Quasi-Likelihood
questionr
Functions to Make Surveys Processing Easier
queuecomputer
Computationally Efficient Queue Simulation
queueing
Analysis of Queueing Networks and Models
quhomology
Calculation of Homology of Quandles, Racks, Biquandles and Biracks
QUIC
Regularized sparse inverse covariance matrix estimation
quickmapr
Quickly Map and Explore Spatial Data
quickpsy
Fits Psychometric Functions for Multiple Groups
quickReg
Build Regression Models Quickly and Display the Results Using 'ggplot2'
quint
Qualitative Interaction Trees
quipu
Summary charts of micro satellite profiles for a set of biological samples
Quor
Quantile Ordering
qut
Quantile Universal Threshold
qVarSel
Variables Selection for Clustering and Classification
qvcalc
Quasi Variances for Factor Effects in Statistical Models
QVM
Questionnaires Validation Module
qwraps2
Quick Wraps 2
QZ
Generalized Eigenvalues and QZ Decomposition
R0
Estimation of R0 and Real-Time Reproduction Number from Epidemics
R1magic
Compressive Sampling: Sparse Signal Recovery Utilities
R2admb
'ADMB' to R Interface Functions
R2BayesX
Estimate Structured Additive Regression Models with 'BayesX'
R2Cuba
Multidimensional Numerical Integration
r2d2
Bivariate (Two-Dimensional) Confidence Region and Frequency Distribution
r2dRue
2d Rain Use Efficience model
R2G2
Converting R CRAN outputs into Google Earth.
r2glmm
Computes R Squared for Mixed (Multilevel) Models
R2GUESS
Wrapper Functions for GUESS
R2HTML
HTML Exportation for R Objects
R2jags
Using R to Run 'JAGS'
r2lh
R to LaTeX and HTML
R2MLwiN
Running 'MLwiN' from Within R
R2OpenBUGS
Running OpenBUGS from R
R2PPT
Simple R Interface to Microsoft PowerPoint using rcom or RDCOMClient.
R2STATS
A GTK GUI for fitting and comparing GLM and GLMM in R
r2stl
r2stl, R package for visualizing data using a 3D printer
R2SWF
Convert R Graphics to Flash Animations
R2wd
Write MS-Word documents from R
R2WinBUGS
Running 'WinBUGS' and 'OpenBUGS' from 'R' / 'S-PLUS'
R330
An R package for Stats 330
R4CouchDB
An R Convenience Layer for CouchDB
R4dfp
4dfp MRI Image Read and Write Routines
r4ss
R Code for Stock Synthesis
R6
Classes with Reference Semantics
R6Frame
R6 Wrapper for Data Frames
RAC
R Package for Aqua Culture
race
Racing methods for the selection of the best
RAD
Fit RAD models to biological data
RADami
R Package for Phylogenetic Analysis of RADseq Data
RADanalysis
Normalization and Study of Rank Abundance Distributions
radar
Fundamental Formulas for Radar
radarchart
Radar Chart from Chart.js
radiant
Business Analytics using R and Shiny
radiant.basics
Basics Menu for Radiant: Business Analytics using R and Shiny
radiant.data
Business Analytics using R and Shiny
radiant.design
Design Menu for Radiant: Business Analytics using R and Shiny
radiant.model
Model Menu for Radiant: Business Analytics using R and Shiny
radiant.multivariate
Multivariate Menu for Radiant: Business Analytics using R and Shiny
radiomics
Radiomic Image Processing Toolbox
RadioSonde
Tools for plotting skew-T diagrams and wind profiles
radir
Inverse-Regression Estimation of Radioactive Doses
RadOnc
Analytical Tools for Radiation Oncology
RadTran
Radon and Soil Gas Transport in 2D Porous Medium
RAdwords
Loading Google Adwords Data into R
rafalib
Convenience Functions for Routine Data Exploration
rags2ridges
Ridge Estimation of Precision Matrices from High-Dimensional Data
ragt2ridges
Ridge Estimation of Vector Auto-Regressive (VAR) Processes
ragtop
Pricing Equity Derivatives with Extensions of Black-Scholes
RAHRS
Data Fusion Filters for Attitude Heading Reference System (AHRS) with Several Variants of the Kalman Filter and the Mahoney and Madgwick Filters
rainbow
Rainbow Plots, Bagplots and Boxplots for Functional Data
raincpc
Obtain and Analyze Rainfall Data from the Climate Prediction Center
rainfreq
Rainfall Frequency (Design Storm) Estimates from the US National Weather Service
rakeR
Easy Spatial Microsimulation (Raking) in R
rAltmetric
Retrieves Altmerics Data For Any Published Paper From Altmetric.com
RAM
R for Amplicon-Sequencing-Based Microbial-Ecology
Ramble
Parser Combinator for R
Rambo
The Random Subgraph Model
rAmCharts
JavaScript Charts API Tool
ramcmc
Robust Adaptive Metropolis Algorithm
ramidst
An Interface to the AMIDST Toolbox for Data Stream Processing
ramify
Additional Matrix Functionality
RAMP
Regularized Generalized Linear Models with Interaction Effects
RAMpath
Structural Equation Modeling Using the Reticular Action Model (RAM) Notation
ramps
Bayesian Geostatistical Modeling with RAMPS
ramsvm
Reinforced Angle-Based Multicategory Support Vector Machines
randaes
Random number generator based on AES cipher
randNames
Package Provides Access to Fake User Data
random
True Random Numbers using RANDOM.ORG
randomcoloR
Generate Attractive Random Colors
RandomFields
Simulation and Analysis of Random Fields
RandomFieldsUtils
Utilities for the Simulation and Analysis of Random Fields
randomForest
Breiman and Cutler's Random Forests for Classification and Regression
randomForest.ddR
Distributed 'randomForest' for Big Data using 'ddR' API
randomForestSRC
Random Forests for Survival, Regression and Classification (RF-SRC)
randomGLM
Random General Linear Model Prediction
randomizationInference
Flexible Randomization-Based Inference
randomizeBE
Function to Create a Random List for Crossover Studies
randomizeR
Randomization for Clinical Trials
randomizr
Easy to Use Tools for Common Forms of Random Assignment
randomLCA
Random Effects Latent Class Analysis
randomNames
Function for Generating Random Names and a Dataset
random.polychor.pa
A Parallel Analysis with Polychoric Correlation Matrices
randomUniformForest
Random Uniform Forests for Classification, Regression and Unsupervised Learning
randstr
Generate Random Strings
randtests
Testing randomness in R
randtoolbox
Toolbox for Pseudo and Quasi Random Number Generation and RNG Tests
RandVar
Implementation of Random Variables
rangeBuilder
Occurrence Filtering, Geographic and Taxonomic Standardization and Generation of Species Range Polygons
rangeMapper
A Platform for the Study of Macroecology of Life History Traits
rangemodelR
Mid-Domain Effect and Species Richness Patterns
ranger
A Fast Implementation of Random Forests
RankAggreg
Weighted rank aggregation
Rankcluster
Model-Based Clustering for Multivariate Partial Ranking Data
rankdist
Distance Based Ranking Models
rankFD
Rank-Based Tests for General Factorial Designs
rankhazard
Rank-Hazard Plots
RankResponse
Ranking Responses in a Single Response Question or a Multiple Response Question
RANKS
Ranking of Nodes with Kernelized Score Functions
RANN
Fast Nearest Neighbour Search (Wraps Arya and Mount's ANN Library)
RANN.L1
Fast Nearest Neighbour Search (Wraps ANN Library) Using L1 Metric
RAP
Reversal Association Pattern
RapidPolygonLookup
Polygon lookup using kd trees
RAPIDR
Reliable Accurate Prenatal non-Invasive Diagnosis R package
RApiSerialize
R API Serialization
RAppArmor
Bindings to AppArmor and Security Related Linux Tools
rappdirs
Application Directories: Determine Where to Save Data, Caches, and Logs
rapport
A Report Templating System
rapportools
Miscellaneous (stats) helper functions with sane defaults for reporting
raptr
Representative and Adequate Prioritization Toolkit in R
RArcInfo
Functions to import data from Arc/Info V7.x binary coverages
rareGE
Testing Gene-Environment Interaction for Rare Genetic Variants
rareNMtests
Ecological and biogeographical null model tests for comparing rarefaction curves
Rarity
Calculation of Rarity Indices for Species and Assemblages of Species
rARPACK
Solvers for Large Scale Eigenvalue and SVD Problems
RaschSampler
Rasch Sampler
rasclass
Supervised Raster Image Classification
rase
Range Ancestral State Estimation for Phylogeography and Comparative Analyses
raster
Geographic Data Analysis and Modeling
rasterImage
An Improved Wrapper of Image()
rasterKernelEstimates
Kernel Based Estimates on in-Memory Raster Images
rasterVis
Visualization Methods for Raster Data
RateDistortion
Routines for Solving Rate-Distortion Problems
rateratio.test
Exact rate ratio test
raters
A Modification of Fleiss' Kappa in Case of Nominal and Ordinal Variables
ratesci
Confidence Intervals for Comparisons of Binomial or Poisson Rates
rationalfun
Manipulation of Rational Functions
RAtmosphere
Standard Atmospheric profiles
rattle
Graphical User Interface for Data Mining in R
rAverage
Parameter estimation for the averaging model of Information Integration Theory
rAvis
Interface to the Bird-Watching Dataset Proyecto AVIS
raw
R Actuarial Workshops
rbamtools
Read and Write BAM (Binary Alignment) Files
rBayesianOptimization
Bayesian Optimization of Hyperparameters
rbefdata
BEFdata R package
rbenchmark
Benchmarking routine for R
Rbent
Robust Bent Line Regression
RBerkeley
Oracle 'Berkeley DB' Interface for R
rBeta2009
The Beta Random Number and Dirichlet Random Vector Generating Functions
rbgm
Tools for 'Box Geometry Model' (BGM) Files and Topology for the Atlantis Ecosystem Model
rbhl
Interface to the 'Biodiversity' 'Heritage' Library
rbi
R Interface to LibBi
RbioRXN
Process Rhea, KEGG, MetaCyc, Unipathway Biochemical Reaction Data
rbiouml
Interact with BioUML Server
rbison
Interface to the 'USGS' 'BISON' 'API'
Rbitcoin
R & bitcoin integration
rbitcoinchartsapi
R Package for the BitCoinCharts.com API
Rblpapi
R Interface to 'Bloomberg'
rbmn
Handling Linear Gaussian Bayesian Networks
RBMRB
BMRB Data Access and Visualization
rbokeh
R Interface for Bokeh
Rborist
Extensible, Parallelizable Implementation of the Random Forest Algorithm
rbounds
Perform Rosenbaum bounds sensitivity tests for matched and unmatched data.
RBPcurve
The Residual-Based Predictiveness Curve
rbugs
Fusing R and OpenBugs and Beyond
rbundler
Rbundler manages an application's dependencies systematically and repeatedly.
rbvs
Ranking-Based Variable Selection
RCA
Relational Class Analysis
R.cache
Fast and Light-Weight Caching (Memoization) of Objects and Results to Speed Up Computations
RCALI
Calculation of the Integrated Flow of Particles Between Polygons
rcanvec
Access and Plot CanVec and CanVec+ Data for Rapid Basemap Creation in Canada
Rcapture
Loglinear Models for Capture-Recapture Experiments
rCarto
This package builds maps with a full cartographic layout.
RCassandra
R/Cassandra interface
rCBA
CBA Classifier for R
rcbalance
Large, Sparse Optimal Matching with Refined Covariate Balance
rcbsubset
Optimal Subset Matching with Refined Covariate Balance
rccdates
Date Functions for Swedish Cancer Data
rccmisc
Miscellaneous R Functions for Swedish Regional Cancer Centers
rcdd
Computational Geometry
rcdk
Interface to the CDK Libraries
rcdklibs
The CDK Libraries Packaged for R
RCEIM
RCEIM - R Cross Entropy Inspired Method for Optimization
RcellData
Example Dataset for 'Rcell' Package
Rcereal
C++ Header Files of 'cereal'
Rcgmin
Conjugate Gradient Minimization of Nonlinear Functions
rchallenge
A Simple Data Science Challenge System
rchess
Chess Move, Generation/Validation, Piece Placement/ Movement, and Check/Checkmate/Stalemate Detection
Rchoice
Discrete Choice (Binary, Poisson and Ordered) Models with Random Parameters
rChoiceDialogs
rChoiceDialogs collection
RChronoModel
Post-Processing of the Markov Chain Simulated by ChronoModel
rcicr
Reverse-Correlation Image-Classification Toolbox
RCircos
Circos 2D Track Plot
RClimMAWGEN
RClimMAWGEN (R Climate Index Multi-site Auto-regressive Weather GENeretor): a package to generate time series of climate indices from RMAWGEN generations.
rClinicalCodes
R tools for integrating with the www.clinicalcodes.org repository
rclinicaltrials
Download Aggregate Trial Information and Results from ClinicalTrials.gov
RClone
Partially Clonal Populations Analysis
Rclusterpp
Linkable C++ clustering
rCMA
R-to-Java Interface for 'CMA-ES'
rcmdcheck
Run 'R CMD check' from 'R' and Capture Results
Rcmdr
R Commander
RcmdrMisc
R Commander Miscellaneous Functions
RcmdrPlugin.BCA
Rcmdr Plug-In for Business and Customer Analytics
RcmdrPlugin.BiclustGUI
'Rcmdr' Plug-in GUI for Biclustering
RcmdrPlugin.coin
Rcmdr Coin Plug-In
RcmdrPlugin.depthTools
R commander Depth Tools Plug-In
RcmdrPlugin.DoE
R Commander Plugin for (industrial) Design of Experiments
RcmdrPlugin.doex
Rcmdr plugin for Stat 4309 course
RcmdrPlugin.EACSPIR
Plugin de R-Commander para el Manual 'EACSPIR'
RcmdrPlugin.EBM
Rcmdr Evidence Based Medicine Plug-in Package
RcmdrPlugin.EcoVirtual
Rcmdr EcoVirtual Plugin
RcmdrPlugin.epack
Rcmdr plugin for time series
RcmdrPlugin.Export
Export R Output to LaTeX or HTML
RcmdrPlugin.EZR
R Commander Plug-in for the EZR (Easy R) Package
RcmdrPlugin.FactoMineR
Graphical User Interface for FactoMineR
RcmdrPlugin.FuzzyClust
R Commander Plug-in for Fuzzy Clustering Methods (Fuzzy C-Means and Gustafson Kessel)
RcmdrPlugin.GWRM
R Commander Plug-in for Fitting Generalized Waring Regression Models
RcmdrPlugin.HH
Rcmdr Support for the HH Package
RcmdrPlugin.IPSUR
An IPSUR Plugin for the R Commander
RcmdrPlugin.KMggplot2
An Rcmdr Plug-in for Kaplan-Meier Plots and Other Plots by Using the ggplot2 Package
RcmdrPlugin.lfstat
Rcmdr Plug-in for Low Flow Analysis
RcmdrPlugin.MA
Graphical User Interface for Conducting Meta-Analyses in R
RcmdrPlugin.mosaic
Adds menu items to produce mosaic plots and assoc plots to Rcmdr
RcmdrPlugin.MPAStats
R Commander Plug-in for MPA Statistics
RcmdrPlugin.NMBU
R Commander Plug-in for University Level Applied Statistics
RcmdrPlugin.orloca
orloca Rcmdr Plug-in
RcmdrPlugin.PcaRobust
R Commander Plug-in for Robust Principal Component Analysis
RcmdrPlugin.plotByGroup
Rcmdr plots by group using lattice
RcmdrPlugin.pointG
Graphical POINT of view for questionnaire data Rcmdr Plug-In
RcmdrPlugin.qual
Rcmdr plugin for quality control course
RcmdrPlugin.RMTCJags
R MTC Jags 'Rcmdr' Plugin
RcmdrPlugin.ROC
Rcmdr Receiver Operator Characteristic Plug-In PACKAGE
RcmdrPlugin.sampling
Tools for sampling in Official Statistical Surveys
RcmdrPlugin.SCDA
Rcmdr Plugin for Designing and Analyzing Single-case Experiments
RcmdrPlugin.seeg
Rcmdr Plugin for seeg
RcmdrPlugin.SLC
SLC Rcmdr Plug-in
RcmdrPlugin.SM
Rcmdr Sport Management Plug-In
RcmdrPlugin.sos
Efficiently search the R help pages
RcmdrPlugin.steepness
Steepness Rcmdr Plug-in
RcmdrPlugin.survival
R Commander Plug-in for the 'survival' Package
RcmdrPlugin.TeachingDemos
Rcmdr Teaching Demos Plug-in
RcmdrPlugin.temis
Graphical Integrated Text Mining Solution
RcmdrPlugin.UCA
UCA Rcmdr Plug-in
RCMIP5
Tools for Manipulating and Summarizing CMIP5 Data
Rcolombos
Interface to Colombos Compendia using the Exposed REST API
RColorBrewer
ColorBrewer Palettes
rcompanion
Functions to Support Extension Education Program Evaluation
RConics
Computations on Conics
rcorpora
A Collection of Small Text Corpora of Interesting Data
Rcplex
R Interface to CPLEX
RCPmod
Regions of Common Profiles Modelling with Mixtures-of-Experts
Rcpp
Seamless R and C++ Integration
Rcpp11
R and C++11
RcppAnnoy
'Rcpp' Bindings for 'Annoy', a Library for Approximate Nearest Neighbors
RcppAPT
'Rcpp' Interface to the APT Package Manager
RcppArmadillo
'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra Library
RcppBDT
Rcpp bindings for the Boost Date_Time library
RcppCCTZ
'Rcpp' Bindings for the 'CCTZ' Library
RcppClassic
Deprecated 'classic' Rcpp API
RcppClassicExamples
Examples using RcppClassic to interface R and C++
RcppCNPy
Read-Write Support for 'NumPy' Files via 'Rcpp'
RcppDE
Global Optimization by Differential Evolution in C++
RcppDL
Deep Learning Methods via Rcpp
RcppEigen
'Rcpp' Integration for the 'Eigen' Templated Linear Algebra Library
RcppExamples
Examples using 'Rcpp' to Interface R and C++
RcppFaddeeva
'Rcpp' Bindings for the 'Faddeeva' Package
RcppGetconf
'Rcpp' Interface for Querying System Configuration Variables
RcppGSL
'Rcpp' Integration for 'GNU GSL' Vectors and Matrices
RcppHoney
Iterator Based Expression Template Expansion of Standard Operators
RcppMLPACK
Rcpp Integration for MLPACK Library
RcppNumerical
'Rcpp' Integration for Numerical Computing Libraries
RcppOctave
Seamless Interface to Octave -- And Matlab
RcppParallel
Parallel Programming Tools for 'Rcpp'
RcppProgress
An Interruptible Progress Bar with OpenMP Support for C++ in R Packages
RcppRedis
'Rcpp' Bindings for 'Redis' using the 'hiredis' Library
RcppRoll
Efficient Rolling / Windowed Operations
RcppShark
R Interface to the Shark Machine Learning Library
RcppSMC
Rcpp bindings for Sequential Monte Carlo
RcppStreams
'Rcpp' Integration of the 'Streamulus' 'DSEL' for Stream Processing
RcppTOML
'Rcpp' Bindings to Parser for Tom's Obvious Markup Language
RcppXts
Interface the xts API via Rcpp
RcppZiggurat
'Rcpp' Integration of Different "Ziggurat" Normal RNG Implementations
rcqp
Interface to the Corpus Query Protocol
RCriteo
Loading Criteo Data into R
rcrossref
Client for Various 'CrossRef' APIs
rcrypt
Symmetric File Encryption Using GPG
RCryptsy
Access to Cryptsy Crypto-Currency Exchange Public Information API via R
Rcsdp
R Interface to the CSDP Semidefinite Programming Library
rcss
Convex Switching Systems
rCUR
CUR decomposition package
RCurl
General Network (HTTP/FTP/...) Client Interface for R
Rd2roxygen
Convert Rd to Roxygen Documentation
rda
Shrunken Centroids Regularized Discriminant Analysis
RDataCanvas
Basic Runtime Support for Datacanvas.io
rdatacite
'DataCite' Client for 'OAI-PMH' Methods and their Search 'API'
rdatamarket
Data access API for DataMarket.com
rdd
Regression Discontinuity Estimation
rddtools
Toolbox for Regression Discontinuity Design ('RDD')
rDEA
Robust Data Envelopment Analysis (DEA) for R
rdefra
Interact with the UK AIR Pollution Database from DEFRA
rdetools
Relevant Dimension Estimation (RDE) in Feature Spaces
R.devices
Unified Handling of Graphics Devices
rdian
Client Library for The Guardian
Rdice
A Collection of Functions to Experiment Dice Rolls
RDIDQ
It perform Quality check on data
RDieHarder
R interface to the dieharder RNG test suite
Rdistance
Distance Sampling Analyses
RDML
Importing Real-Time Thermo Cycler (qPCR) Data from RDML Format Files
rDNA
R Bindings for the Discourse Network Analyzer
rDNAse
Generating Various Numerical Representation Schemes of DNA Sequences
rdnb
R Interface to the Deutsche Nationalbibliothek (German National Library) API
RDocumentation
Integrate R with 'RDocumentation.org'
rdomains
Get the Category of Content Hosted by a Domain
RDota2
An R Steam API Client for Valve's Dota2
Rdpack
Update and Manipulate Rd Documentation Objects
rdpla
Client for the Digital Public Library of America ('DPLA')
rdrobust
Robust Data-Driven Statistical Inference in Regression-Discontinuity Designs
rdrop2
Programmatic Interface to the 'Dropbox' API
rdryad
Access for Dryad Web Services
RDS
Respondent-Driven Sampling
Rdsdp
R Interface to DSDP Semidefinite Programming Library
Rdsm
Threads Environment for R
RDSTK
An R wrapper for the Data Science Toolkit API
RDStreeboot
RDS Tree Bootstrap Method
Rdtq
Density Tracking by Quadrature
rDVR
The rDVR package allows you to start stop and save a video server from within R.
reactR
React Helpers
ReacTran
Reactive transport modelling in 1D, 2D and 3D
readbitmap
Simple Unified Interface to Read Bitmap Images (BMP,JPEG,PNG)
readBrukerFlexData
Reads Mass Spectrometry Data in Bruker *flex Format
readbulk
Read and Combine Multiple Data Files
read.dbc
Read Data Stored in DBC (Compressed DBF) Files
reader
Suite of Functions to Flexibly Read Data from Files
readMLData
Reading Machine Learning Benchmark Data Sets in Different Formats
readMzXmlData
Reads Mass Spectrometry Data in mzXML Format
readODS
Read and Write ODS Files
readr
Read Tabular Data
readstata13
Import 'Stata' Data Files
readxl
Read Excel Files
RealVAMS
Multivariate VAM Fitting
reams
Resampling-Based Adaptive Model Selection
Rearrangement
Monotonize Point and Interval Functional Estimates by Rearrangement
REAT
Regional Economic Analysis Tools
REBayes
Empirical Bayes Estimation and Inference in R
rebird
R Client for the eBird Database of Bird Observations
rebmix
Finite Mixture Modeling, Clustering & Classification
rebus
Build Regular Expressions in a Human Readable Way
rebus.base
Core Functionality for the 'rebus' Package
rebus.datetimes
Date and Time Extensions for the 'rebus' Package
rebus.numbers
Numeric Extensions for the 'rebus' Package
rebus.unicode
Unicode Extensions for the 'rebus' Package
RECA
Relevant Component Analysis for Supervised Distance Metric Learning
recexcavAAR
3D Reconstruction of Archaeological Excavations
rechonest
R Interface to Echo Nest API
ReCiPa
Redundancy Control in Pathways databases
recluster
Ordination Methods for the Analysis of Beta-Diversity Indices
recmap
Compute the Rectangular Statistical Cartogram
recoder
A Simple and Flexible Recoder
recommenderlab
Lab for Developing and Testing Recommender Algorithms
recommenderlabBX
Book-Crossing Dataset (BX) for 'recommenderlab'
recommenderlabJester
Jester Dataset for 'recommenderlab'
reconstructr
Session Reconstruction and Analysis
RecordLinkage
Record Linkage in R
recordr
R Provenance Tracking
Records
Record Values and Record Times
recosystem
Recommender System using Matrix Factorization
red
IUCN Redlisting Tools
reda
Recurrent Event Data Analysis
REdaS
Companion Package to the Book 'R: Einführung durch angewandte Statistik'
redcapAPI
R Interface to REDCap
REDCapR
Interaction Between R and REDCap
RedditExtractoR
Reddit Data Extraction Toolkit
reddPrec
Reconstruction of Daily Data - Precipitation
redist
Markov Chain Monte Carlo Methods for Redistricting Simulation
redland
RDF Library Bindings in R
rEDM
Applications of Empirical Dynamic Modeling from Time Series
REEMtree
Regression Trees with Random Effects for Longitudinal (Panel) Data
ref
References for R
referenceIntervals
Reference Intervals
RefFreeEWAS
EWAS using Reference-Free DNA Methylation Mixture Deconvolution
refGenome
Gene and Splice Site Annotation Using Annotation Data from Ensembl and UCSC Genome Browsers
refimpact
API Wrapper for the UK REF 2014 Impact Case Studies Database
RefManageR
Straightforward 'BibTeX' and 'BibLaTeX' Bibliography Management
refnr
Refining Data Table Using a Set of Formulas
refset
Subsets with Reference Semantics
refund
Regression with Functional Data
refund.shiny
Interactive Plotting for Functional Data Analyses
refund.wave
Wavelet-Domain Regression with Functional Data
regclass
Tools for an Introductory Class in Regression and Modeling
RegClust
Cluster analysis via regression coefficients.
reGenotyper
Detecting Mislabeled Samples in Genetic Data
REGENT
Risk Estimation for Genetic and Environmental Traits
regexPipes
Wrappers Around 'base::grep()' for Use with Pipes
regexr
Readable Regular Expressions
registry
Infrastructure for R Package Registries
reglogit
Simulation-Based Regularized Logistic Regression
regpro
Nonparametric Regression
regress
Gaussian linear models with linear covariance structure
RegressionFactory
Expander Functions for Generating Full Gradient and Hessian from Single-Slot and Multi-Slot Base Distributions
regRSM
Random Subspace Method (RSM) for Linear Regression
regsel
Variable Selection and Regression
regsem
Performs Regularization on Structural Equation Models
regspec
Non-Parametric Bayesian Spectrum Estimation for Multirate Data
regsubseq
Detect and Test Regular Sequences and Subsequences
regtest
Regression testing
regtools
Regression Tools
rehh
Searching for Footprints of Selection using Haplotype Homozygosity Based Tests
rehh.data
Data Only: Searching for Footprints of Selection using Haplotype Homozygosity Based Tests
reinstallr
Search and Install Missing Packages
rel
Reliability Coefficients
rela
Item Analysis Package with Standard Errors
relabeLoadings
Relabel Loadings from MCMC Output for Confirmatory Factor Analysis
relaimpo
Relative importance of regressors in linear models
Relatedness
An Algorithm to Infer Relatedness
relations
Data Structures and Algorithms for Relations
relax
relax -- R Editor for Literate Analysis and lateX
relaxnet
Relaxation of glmnet models (as in relaxed lasso, Meinshausen 2007)
relaxo
Relaxed Lasso
reldist
Relative Distribution Methods
relen
Compute Relative Entropy
relevent
Relational Event Models
Reliability
Functions for estimating parameters in software reliability models
ReliabilityTheory
Tools for Structural Reliability Analysis
reliaR
Package for some probability distributions.
relimp
Relative Contribution of Effects in a Regression Model
relMix
Relationship Inference for DNA Mixtures
relSim
Relative Simulator
relsurv
Relative Survival
RelValAnalysis
Relative Value Analysis
rem
Relational Event Models (REM)
rematch
Match Regular Expressions with a Nicer 'API'
remix
Remix your data
rEMM
Extensible Markov Model for Modelling Temporal Relationships Between Clusters
remMap
Regularized Multivariate Regression for Identifying Master Predictors
remote
Empirical Orthogonal Teleconnections in R
remoter
Remote R: Control a Remote R Session from a Local One
remotes
R Package Installation from Remote Repositories, Including 'GitHub'
REndo
Fitting Linear Models with Endogenous Regressors using Latent Instrumental Variables
Renext
Renewal Method for Extreme Values Extrapolation
RenextGUI
GUI for Renext
rentrez
Entrez in R
Reol
R interface to the Encyclopedia of Life
ReorderCluster
Reordering the dendrogram according to the class labels
RepeatABEL
GWAS for Multiple Observations on Related Individuals
repeated
Non-Normal Repeated Measurements Models
RepeatedHighDim
Global tests for expression data of high-dimensional sets of molecular features.
repfdr
Replicability Analysis for Multiple Studies of High Dimension
repijson
Tools for Handling EpiJSON (Epidemiology Data) Files
replicatedpp2w
Two-Way ANOVA-Like Method to Analyze Replicated Point Patterns
replicationInterval
Replication Interval Functions
repmis
Miscellaneous Tools for Reproducible Research
repo
A Data-Centered Data Flow Manager
repolr
Repeated Measures Proportional Odds Logistic Regression
ReporteRs
Microsoft Word and PowerPoint Documents Generation
ReporteRsjars
External jars required for package ReporteRs
reportr
A General Message and Error Reporting System
reportRx
Tools for automatically generating reproducible clinical report
reports
Assist the Workflow of Writing Academic Articles and Other Reports
reporttools
Generate LaTeX Tables of Descriptive Statistics
REPPlab
R Interface to 'EPP-Lab', a Java Program for Exploratory Projection Pursuit
repr
Serializable Representations
represent
Determine the representativity of two multidimensional data sets
represtools
Reproducible Research Tools
reproducer
Reproduce Statistical Analyses and Meta-Analyses
REPTILE
Regulatory DNA Element Prediction
REQS
R/EQS Interface
request
High Level 'HTTP' Client
rerddap
General Purpose Client for 'ERDDAP' Servers
REREFACT
Reordering and/or Reflecting Factors for Simulation Studies with Exploratory Factor Analysis
reReg
Recurrent Event Regression
resample
Resampling Functions
resampledata
Data Sets for Mathematical Statistics with Resampling in R
resemble
Regression and Similarity Evaluation for Memory-Based Learning in Spectral Chemometrics
reservoir
Tools for Analysis, Design, and Operation of Water Supply Storages
reshape
Flexibly Reshape Data
reshape2
Flexibly Reshape Data: A Reboot of the Reshape Package
reshapeGUI
A GUI for the reshape2 and plyr packages.
ResistorArray
electrical properties of resistor networks
ResourceSelection
Resource Selection (Probability) Functions for Use-Availability Data
respirometry
Tools for Conducting Respirometry Experiments
RESS
Integrates R and Essentia
REST
RcmdrPlugin Easy Script Templates
restimizeapi
Functions for Working with the 'www.estimize.com' Web Services
restlos
Robust Estimation of Location and Scatter
restorepoint
Debugging with Restore Points
resumer
Build Resumes with R
rethinker
RethinkDB Client
retimes
Reaction Time Analysis
retistruct
Retinal Reconstruction Program
retrosheet
Import Professional Baseball Data from 'Retrosheet'
reutils
Talk to the NCBI EUtils
reval
Repeated Function Evaluation for Sensitivity Analysis
revdbayes
Ratio-of-Uniforms Sampling for Bayesian Extreme Value Analysis
revealedPrefs
Revealed Preferences and Microeconomic Rationality
revealjs
R Markdown Format for 'reveal.js' Presentations
RevEcoR
Reverse Ecology Analysis on Microbiome
reweight
Adjustment of Survey Respondent Weights
rex
Friendly Regular Expressions
Rexperigen
R Interface to Experigen
rexpokit
R wrappers for EXPOKIT; other matrix functions
Rfacebook
Access to Facebook API via R
Rfast
Fast R Functions
RFc
Client for FetchClimate Web Service
rFDSN
Get Seismic Data from the International Federation of Digital Seismograph Networks
rFerns
Random Ferns Classifier
RFGLS
Rapid Feasible Generalized Least Squares
RFgroove
Importance Measure and Selection for Groups of Variables with Random Forests
rfigshare
An R Interface to 'figshare'
R.filesets
Easy Handling of and Access to Files Organized in Structured Directories
RFinanceYJ
RFinanceYJ
RFinfer
Inference for Random Forests
rfishbase
R Interface to 'FishBase'
rfisheries
'Programmatic Interface to the 'openfisheries.org' API'
Rfit
Rank Estimation for Linear Models
rflann
Basic R Interface to the FLANN C++ Library
RFLPtools
Tools to analyse RFLP data
RFmarkerDetector
Multivariate Analysis of Metabolomics Data using Random Forests
rfml
MarkLogic NoSQL Database Server in-Database Analytics for R
Rfmtool
Fuzzy Measure Tools for R
rfoaas
R Interface to 'FOAAS'
RFOC
Graphics for Spherical Distributions and Earthquake Focal Mechanisms
RForcecom
Data Integration Feature for Force.com and Salesforce.com
rfordummies
Code Examples to Accompany the Book "R for Dummies"
rforensicbatwing
BATWING for calculating forensic trace-suspect match probabilities
RFormatter
R Source Code Formatter
rfPermute
Estimate Permutation p-Values for Random Forest Importance Metrics
RFreak
R/FrEAK interface
rFSA
Feasible Solution Algorithm for Finding Best Subsets and Interactions
rFTRLProximal
FTRL-Proximal Algorithm
rfUtilities
Random Forests Model Selection and Performance Evaluation
RGA
A Google Analytics API Client
Rga4gh
An Interface to the GA4GH API
rgabriel
Gabriel Multiple Comparison Test and Plot the Confidence Interval on Barplot
rgam
Robust Generalized Additive Model
rGammaGamma
Gamma convolutions for methylation array background correction.
rgbif
Interface to the Global 'Biodiversity' Information Facility 'API'
Rgbp
Hierarchical Modeling and Frequency Method Checking on Overdispersed Gaussian, Poisson, and Binomial Data
RGCCA
RGCCA and Sparse GCCA for multi-block data analysis
rgcvpack
R Interface for GCVPACK Fortran Package
rgdal
Bindings for the Geospatial Data Abstraction Library
RGENERATE
Tools To Generate Vector Time Series
RGENERATEPREC
Tools To Generate Daily-Precipitation Time Series
RGenetics
R packages for genetics research
rgenoud
R Version of GENetic Optimization Using Derivatives
rgeoapi
Get Information from the GeoAPI
rgeolocate
IP Address Geolocation
rgeos
Interface to Geometry Engine - Open Source (GEOS)
rgeospatialquality
Wrapper for the Geospatial Data Quality REST API
rgexf
Build, Import and Export GEXF Graph Files
rggobi
Interface Between R and 'GGobi'
rgho
Access WHO Global Health Observatory Data from R
RGIFT
Create quizzes in GIFT Format
rgl
3D Visualization Using OpenGL
rglobi
R Interface to Global Biotic Interactions
Rglpk
R/GNU Linear Programming Kit Interface
rglwidget
'rgl' in 'htmlwidgets' Framework
Rgnuplot
R Interface for Gnuplot
RGoogleAnalytics
R Wrapper for the Google Analytics API
RGoogleAnalyticsPremium
Unsampled Data in R for Google Analytics Premium Accounts
RGoogleFit
R Interface to Google Fit API
RgoogleMaps
Overlays on Static Maps
rgp
R genetic programming framework
rgpui
UI for the RGP genetic programming framework
rgr
Applied Geochemistry EDA
RGraphics
Data and Functions from the Book R Graphics, Second Edition
rgrass7
Interface Between GRASS 7 Geographical Information System and R
rGroovy
Groovy Language Integration
RGtk2
R bindings for Gtk 2.8.0 and above
RGtk2Extras
Data frame editor and dialog making wrapper for RGtk2
rgw
Goodman-Weare Affine-Invariant Sampling
RH2
DBI/RJDBC interface to h2 Database
rhandsontable
Interface to the 'Handsontable.js' Library
rHealthDataGov
Retrieve data sets from the HealthData.gov data API
rhnerm
Random Heteroscedastic Nested Error Regression
rhoR
Rho for Inter Rater Reliability
rhosp
Side Effect Risks in Hospital : Simulation and Estimation
Rhpc
Permits *apply() Style Dispatch for 'HPC'
RhpcBLASctl
Control the Number of Threads on 'BLAS'
rHpcc
Interface between HPCC and R
RHRV
Heart Rate Variability Analysis of ECG Data
RHT
Regularized Hotelling's T-square Test for Pathway (Gene Set) Analysis
R.huge
Methods for Accessing Huge Amounts of Data [deprecated]
ri
ri: R package for performing randomization-based inference for experiments
RI2by2
Randomization Inference for Treatment Effects on a Binary Outcome
riceware
A Diceware Passphrase Implementation
rich
Computes and Compares Species Richnesses
RidgeFusion
R Package for Ridge Fusion in Statistical Learning
ridigbio
Interface to the iDigBio Data API
Ridit
Ridit Analysis (An extension of the Kruskal-Wallis Test.)
riem
Accesses Weather Data from the Iowa Environment Mesonet
RIFS
Random Iterated Function System (RIFS)
RImageJROI
Read 'ImageJ' Region of Interest (ROI) Files
RImagePalette
Extract the Colors from Images
RImpala
Using Cloudera 'Impala' Through 'R'
rinat
Access iNaturalist data through APIs
rindex
Indexing for R
RInside
C++ Classes to Embed R in C++ Applications
RInSp
R Individual Specialization (RInSp)
rintrojs
Wrapper for the 'Intro.js' Library
rio
A Swiss-Army Knife for Data I/O
rioja
Analysis of Quaternary Science Data
Rip46
Utils for IP4 and IP6 Addresses
ripa
R Image Processing and Analysis
rIsing
High-Dimensional Ising Model Selection
riskR
Risk Management
riskRegression
Risk Regression Models for Survival Analysis with Competing Risks
risksetROC
Riskset ROC curve estimation from censored survival data
riskSimul
Risk Quantification for Stock Portfolios under the T-Copula Model
RISmed
Download Content from NCBI Databases
Ritc
Isothermal Titration Calorimetry (ITC) Data Analysis
rite
The Right Editor to Write R
ritis
Integrated Taxonomic Information System Client
RItools
Randomization Inference Tools
riv
Robust instrumental variables estimator
riverdist
River Network Distance Computation and Applications
rivernet
Read, Analyze and Plot River Networks
riverplot
Sankey or Ribbon Plots
rivervis
River Visualisation Tool
Rivivc
In vitro in vivo correlation linear level A
rivr
Steady and Unsteady Open-Channel Flow Computation
RJaCGH
Reversible Jump MCMC for the Analysis of CGH Arrays
rjade
A Clean, Whitespace-Sensitive Template Language for Writing HTML
RJafroc
Analysis of Data Acquired Using the Receiver Operating Characteristic Paradigm and Its Extensions
rjags
Bayesian Graphical Models using MCMC
rJava
Low-Level R to Java Interface
RJDBC
Provides access to databases through the JDBC interface
rje
Miscellaneous useful functions
r.jive
Perform JIVE Decompositions for Multi-Source Data
rJPSGCS
R-interface to Gene Drop Simulation from JPSGCS
Rjpstatdb
R interface of the Gateway to Advanced and User-friendly Statistics Service
RJSDMX
R Interface to SDMX Web Services
rjson
JSON for R
RJSONIO
Serialize R objects to JSON, JavaScript Object Notation
rjstat
Read and Write 'JSON-stat' Data Sets
rJython
R interface to Python via Jython
rkafka
Using Apache 'Kafka' Messaging Queue Through 'R'
rkafkajars
External Jars Required for Package 'rkafka'
RKEA
R/KEA Interface
RKEAjars
R/KEA Interface Jars
RKEEL
Using Keel in R Code
RKEELdata
Datasets from KEEL for it Use in RKEEL
RKEELjars
Java Executable .jar Files for 'RKEEL'
RKlout
Fetch Klout Scores for Twitter Users
rknn
Random KNN Classification and Regression
Rknots
Topological Analysis of Knotted Proteins, Biopolymers and 3D Structures
rkt
Mann-Kendall Test, Seasonal and Regional Kendall Tests
rkvo
Read Key/Value Pair Observations
Rlab
Functions and Datasets Required for ST370 class
Rlabkey
Data Exchange Between R and LabKey Server
rLakeAnalyzer
Lake Physics Tools
rleafmap
Interactive Maps with R and Leaflet
rlecuyer
R Interface to RNG with Multiple Streams
Rlibeemd
Ensemble Empirical Mode Decomposition (EEMD) and Its Complete Variant (CEEMDAN)
rLiDAR
LiDAR Data Processing and Visualization
rLindo
R Interface to LINDO API
Rlinkedin
Access to the LinkedIn API via R
rlist
A Toolbox for Non-Tabular Data Manipulation
rlm
Robust Fitting of Linear Model
rlo
Utilities for Writing to 'LibreOffice Writer' Documents
Rlof
R Parallel Implementation of Local Outlier Factor(LOF)
RLogicalOps
Process Logical Operations
RLRsim
Exact (Restricted) Likelihood Ratio Tests for Mixed and Additive Models
rLTP
R Interface to LTP-Cloud Service
RLumModel
Solving Ordinary Differential Equations to Understand Luminescence
RLumShiny
'Shiny' Applications for the R Package 'Luminescence'
rly
Lex and Yacc
RM2
Revenue Management and Pricing Package
rmaf
Refined Moving Average Filter
RMallow
Fit Multi-Modal Mallows' Models to ranking data.
Rmalschains
Continuous Optimization using Memetic Algorithms with Local Search Chains (MA-LS-Chains) in R
rmapshaper
Edit 'GeoJSON' and Spatial Objects
RmarineHeatWaves
Detect Marine Heat Waves and Marine Cold Spells
RMark
R Code for Mark Analysis
rmarkdown
Dynamic Documents for R
rmatio
Read and Write Matlab Files
R.matlab
Read and Write MAT Files and Call MATLAB from Within R
RMAWGEN
Multi-site Auto-regressive Weather GENerator
RMC
Functions for fitting Markov models
rmcfs
The MCFS-ID Algorithm for Feature Selection and Interdependency Discovery
rmcorr
Repeated Measures Correlation
rmdformats
HTML Output Formats and Templates for 'rmarkdown' Documents
rmdHelpers
Helper Functions for Rmd Documents
rmdshower
'R' 'Markdown' Format for 'shower' Presentations
RMediation
Mediation Analysis Confidence Intervals
rmeta
Meta-analysis
rmetasim
An Individual-Based Population Genetic Simulation Environment
R.methodsS3
S3 Methods Simplified
rmgarch
Multivariate GARCH Models
rminer
Data Mining Classification and Regression Methods
Rmisc
Rmisc: Ryan Miscellaneous
Rmixmod
Supervised, Unsupervised, Semi-Supervised Classification with MIXture MODelling (Interface of MIXMOD Software)
RmixmodCombi
Combining Mixture Components for Clustering
RMixpanel
R API for Mixpanel
RMKdiscrete
Sundry Discrete Probability Distributions
rmngb
Miscellaneous Collection of Functions for Medical Data Analysis
RMOA
Connect R with MOA for Massive Online Analysis
RMOAjars
External jars required for package RMOA
RMongo
MongoDB Client for R
Rmosek
The R-to-MOSEK Optimization Interface
rmp
Rounded Mixture Package. Performs Probability Mass Function Estimation with Nonparametric Mixtures of Rounded Kernels
Rmpfr
R MPFR - Multiple Precision Floating-Point Reliable
Rmpi
Interface (Wrapper) to MPI (Message-Passing Interface)
RMRAINGEN
RMRAINGEN (R Multi-site RAINfall GENeretor): a package to generate daily time series of rainfall from monthly mean values
rms
Regression Modeling Strategies
rmsfact
Amazing Random Facts About the World's Greatest Hacker