All R packages

Found 1409 packages. Showing results 1 to 50.

a4
Automated Affymetrix Array Analysis Umbrella Package
a4Base
Automated Affymetrix Array Analysis Base Package
a4Classif
Automated Affymetrix Array Analysis Classification Package
a4Core
Automated Affymetrix Array Analysis Core Package
a4Preproc
Automated Affymetrix Array Analysis Preprocessing Package
a4Reporting
Automated Affymetrix Array Analysis Reporting Package
ABAEnrichment
Gene expression enrichment in human brain regions
ABarray
Microarray QA and statistical data analysis for Applied Biosystems Genome Survey Microrarray (AB1700) gene expression data.
ABSSeq
ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences
acde
Artificial Components Detection of Differentially Expressed Genes
aCGH
Classes and functions for Array Comparative Genomic Hybridization data.
ACME
Algorithms for Calculating Microarray Enrichment (ACME)
ADaCGH2
Analysis of big data from aCGH experiments using parallel computing and ff objects
adSplit
Annotation-Driven Clustering
affxparser
Affymetrix File Parsing SDK
affy
Methods for Affymetrix Oligonucleotide Arrays
affycomp
Graphics Toolbox for Assessment of Affymetrix Expression Measures
AffyCompatible
Affymetrix GeneChip software compatibility
affyContam
structured corruption of affymetrix cel file data
affycoretools
Functions useful for those doing repetitive analyses with Affymetrix GeneChips
AffyExpress
Affymetrix Quality Assessment and Analysis Tool
affyILM
Linear Model of background subtraction and the Langmuir isotherm
affyio
Tools for parsing Affymetrix data files
affylmGUI
GUI for limma package with Affymetrix microarrays
affyPara
Parallelized preprocessing methods for Affymetrix Oligonucleotide Arrays
affypdnn
Probe Dependent Nearest Neighbours (PDNN) for the affy package
affyPLM
Methods for fitting probe-level models
affyQCReport
QC Report Generation for affyBatch objects
AffyRNADegradation
Analyze and correct probe positional bias in microarray data due to RNA degradation
AffyTiling
Easy extraction of individual probes in Affymetrix tiling arrays
AGDEX
Agreement of Differential Expression Analysis
agilp
Agilent expression array processing package
AgiMicroRna
Processing and Differential Expression Analysis of Agilent microRNA chips
AIMS
AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype
ALDEx2
Analysis Of Differential Abundance Taking Sample Variation Into Account
AllelicImbalance
Investigates Allele Specific Expression
alpine
alpine
alsace
ALS for the Automatic Chemical Exploration of mixtures
altcdfenvs
alternative CDF environments (aka probeset mappings)
AMOUNTAIN
Active modules for multilayer weighted gene co-expression networks: a continuous optimization approach
ampliQueso
Analysis of amplicon enrichment panels
AnalysisPageServer
A framework for sharing interactive data and plots from R through the web.
anamiR
An integrated analysis package of miRNA and mRNA expression data
Anaquin
Statistical analysis of sequins
AneuFinder
Analysis of Copy Number Variation in Single-Cell-Sequencing Data
annaffy
Annotation tools for Affymetrix biological metadata
annmap
Genome annotation and visualisation package pertaining to Affymetrix arrays and NGS analysis.
annotate
Annotation for microarrays
AnnotationDbi
Annotation Database Interface
AnnotationFilter
Facilities for Filtering Bioconductor Annotation Resources

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