aveDiff: aveDiff

In CONFESS: Cell OrderiNg by FluorEScence Signal

Description

It estimates the average difference between the original and the CV estimated pseudotimes. For circular path types, the difference is defined as min(diff,max(pseudotime)-diff). For example assuming 300 cells (thus the maximum pseudotime is 300) in a circular path, two pseudotimes 1 and 300 differ only by 1 and not by 299.

Usage

aveDiff(data, path.type, maxPseudo)

Arguments

data	Numeric. A vector of pseudotimes whose first element is the originally estimated one (fromt he full data).
path.type	Character. The input of path.type parameter in pathEstimator().
maxPseudo	Numeric. The maximum possible pseudotime.

Value

The average difference between the original and the CV estimated pseudotimes for a sample.

CONFESS documentation built on Nov. 8, 2020, 6:05 p.m.