estimate.new.pseudotimes: estimate.new.pseudotimes

In CONFESS: Cell OrderiNg by FluorEScence Signal

Description

It estimates a unique pseudotime vector to be used for analysis with Fluo_ordering(). It is based on the cross-validation estimates for each sample and a particular method defined by pseudo.est.method parameter at Fluo_CV_modeling().

Usage

estimate.new.pseudotimes(data)

Arguments

data	Data matrix. The estimated pseudotimes for all samples with the original data and the CV data undet two methods, i.e. "median/original" and median/null". For details see parameter pseudo.est.method at Fluo_CV_modeling().

Value

It summarizes the CV-estimated pseudotimes into a single value. There are three possible methods that may produce different results. For details see parameter pseudo.est.method at Fluo_CV_modeling().

CONFESS documentation built on Nov. 8, 2020, 6:05 p.m.