It estimates a unique pseudotime vector to be used for analysis with Fluo_ordering(). It is based on the cross-validation estimates for each sample and a particular method defined by pseudo.est.method parameter at Fluo_CV_modeling().
Data matrix. The estimated pseudotimes for all samples with the original data and the CV data undet two methods, i.e. "median/original" and median/null". For details see parameter pseudo.est.method at Fluo_CV_modeling().
It summarizes the CV-estimated pseudotimes into a single value. There are three possible methods that may produce different results. For details see parameter pseudo.est.method at Fluo_CV_modeling().