cutpointsEstimator: cutpointsEstimator

In CONFESS: Cell OrderiNg by FluorEScence Signal

Description

A helper that estimates the change-points by various methods.

Usage

cutpointsEstimator(data, thresh, cmethod, sig.level, Q, seed)

Arguments

data	List. A list of adjusted fluorescence signals for both channels.
thresh	Integer. The minimum number of values for a cluster re-estimated by the change-point analysis.
cmethod	Character string. The change point method to be used. It can be one of "ECP", (non-parametric) "manualECP" (non-parametric with user-defined numner of change-points) or "PELT" (Pruned Exact Linear Time; parametric).
sig.level	Float. The significance level below which we do not reject a change point.
Q	Integer. The number of change-points to be kept if CPmethod = "manualECP".
seed	Integer. An optional seed number for the Random Number Generator.

Value

The sorted transformed signal differences (path) and the associated change-points

CONFESS documentation built on Nov. 8, 2020, 6:05 p.m.