cluster2outlier: cluster2outlier

In CONFESS: Cell OrderiNg by FluorEScence Signal

Description

It turns one or more selected clusters to outlier clusters, i.e. clusters consisting of outlying corrected signals.

Usage

cluster2outlier(data, out.cluster)

Arguments

data	List. The output of Fluo_inspection().
out.cluster	Numeric vector. The cluster number(s) to be turned into outlier clusters.

Value

A list of corrected fluorescence signal estimates with the selected clusters turned into outlier clusters.

Examples

### here we (erroneously) assume that cluster 1 is an outlier and we flag it so below
step3.withoutliers <- cluster2outlier(step3,out.cluster=1)

### the outlier samples can be removed by FluoSelection_byRun()
step3.withoutliers <- FluoSelection_byRun(step3.withoutliers,
                                 other=which(step3.withoutliers$GAPgroups[,1]!=-999))

CONFESS documentation built on Nov. 8, 2020, 6:05 p.m.