Man pages for CONFESS
Cell OrderiNg by FluorEScence Signal
| addKpredictions | addKpredictions |
| adjustFluo | adjustFluo |
| aveDiff | aveDiff |
| BatchFluo | BatchFluo |
| BGcorrectFluo | BGcorrectFluo |
| boxcoxMatrix | boxcoxMatrix |
| boxcoxMatrixEst | boxcoxMatrixEst |
| boxFluo | boxFluo |
| caseof0s | caseof0s |
| caseof1R0G | caseof1R0G |
| caseof1R1G | caseof1R1G |
| caseof1R2G | caseof1R2G |
| caseof2R1G | caseof2R1G |
| caseof2R2G | caseof2R2G |
| caseof2Rs0G | caseof2Rs0G |
| clu | clu |
| cluster2outlier | cluster2outlier |
| contrastFluo | contrastFluo |
| cpoints | cpoints |
| cpPELT | cpPELT |
| createFluo | createFluo |
| cutpointsEstimator | cutpointsEstimator |
| CVsampler | CVsampler |
| DDHFfit | DDHFfit |
| DDHFinput | DDHFinput |
| ddhft.np.2 | ddhft.np.2 |
| defineLocClusters | defineLocClusters |
| denoisefun | denoisefun |
| denoiser | denoiser |
| despecklefun | despecklefun |
| diagnoseResiduals | diagnoseResiduals |
| distfromcenter | distfromcenter |
| doTransform | doTransform |
| estimate.new.pseudotimes | estimate.new.pseudotimes |
| estimatePath | estimatePath |
| estimates | estimates |
| estimates.2 | estimates.2 |
| extractBFArea | extractBFarea |
| failurecase | failurecase |
| fclust | fclust |
| files | files |
| filled.contour3 | filled.contour3 |
| findPattern | findPattern |
| fixPath | FixPath |
| flowclust_step1 | flowclust_step1 |
| flowclust_step2 | flowclust_step2 |
| Fluo_adjustment | Fluo_adjustment |
| Fluo_CV_modeling | Fluo_CV_modeling |
| Fluo_CV_prep | Fluo_CV_prep |
| Fluo_inspection | Fluo_inspection |
| FluoInspection | FluoInspection |
| Fluo_modeling | Fluo_modeling |
| Fluo_ordering | Fluo_ordering |
| FluoSelection_byRun | FluoSelection_byRun |
| forceBF | forceBF |
| function.from.vector | function.from.vector |
| GAPanalysis | GAPanalysis |
| getCoordinates_stats | getCoordinates_stats |
| getCsFAIL | getCsFAIL |
| getFluo | getFluo |
| getFluo_byRun | getFluo_byRun |
| getSpot | getSpot |
| giveWarning | giveWarning |
| grouplines | grouplines |
| grubbs | grubbs |
| GrubbsOutliers | GrubbsOutliers |
| highlight.cols | highlight.cols |
| invTransform | invTransform |
| isotone | isotone |
| joinAreas | joinAreas |
| listSorter | listSorter |
| lmFluo | lmFluo |
| LocationMatrix | LocationMatrix |
| mean_signal | mean_signal |
| measureB | measureB |
| measureF | measureF |
| multiplot | multiplot |
| myt | myt |
| orderFluo | orderFluo |
| pathEstimator | pathEstimator |
| path.initiator | path.initiator |
| pathUpdater | pathUpdater |
| plot_clusgap | plot_clusgap |
| plotImages | plotImages |
| predict.kmeans | predict.kmeans |
| processImg | processImg |
| project | project |
| readChaImg | readChaImg |
| readFiles | readFiles |
| readOriImg | readOriImg |
| reestimate.pseudos.byCV | reestimate.pseudos.byCV |
| refineMixes | refineMixes |
| Results | Results |
| revDDHFinput | revDDHFinput |
| signal.from.matrix | signal.from.matrix |
| significantSignal | significantSignal |
| simcells | simcells |
| sortCentroids | sortCentroids |
| SpotbyStrLines | SpotbyStrLines |
| spotCenter | spotCenter |
| spotCoords | spotCoords |
| spotEstimator | spotEstimator |
| spot.simulator | spot.simulator |
| SpotStats | spotStats |
| step1 | step1 |
| step2 | step2 |
| step2.1 | step2.1 |
| step3 | step3 |
| step3.1 | step3.1 |
| step4 | step4 |
| steps2_4 | steps2_4 |
| straightColLines | straightColLines |
| straightRowLines | straightRowLines |
| subsetAnalysis | subsetAnalysis |
| summarizeAdjFluo | summarizeAdjFluo |
| transformFluo | transformFluo |
| trigofun | trigofun |
| unnormalizeC01 | unnormalizeC01 |
| updateCentroids | updateCentroids |
| updateCentroidsPaths | updateCentroidsPaths |
| which.min.diff | which.min.diff |
| zoomInBF | zoomInBF |
