orderFluo: orderFluo

In CONFESS: Cell OrderiNg by FluorEScence Signal

Description

It sort the adjusted (and transfomed) fluorescence signals according to the path progression.

Usage

orderFluo(data, path.type, updater = FALSE)

Arguments

data	List. A list of adjusted fluorescence signals.
updater	Logical. An indicator of the estimation stage. If FALSE the initial groups are analyzed, otherwise the change-point based groups are analyzed.
path.start	Integer. A cluster number indicating the starting cluster that algorithm should use to build the path. The cluster numbers refer to the plot generated by Fluo_inspection(). Default is 1. If path.type = "circular" the number does not matter. If path.type = "A2Z" the user should inspect the Fluo_inspection() plot to detect the beginning of the path. If path.type = "other", the function will not estimate a path. The user has to manually insert the path progression (the cluster numbers) in Fluo_modeling() .

Value

A list with the adjusted fluorescence signals, the centroids, the clusters and the pseudotimes

CONFESS documentation built on Nov. 8, 2020, 6:05 p.m.