zoomInBF: zoomInBF
In CONFESS: Cell OrderiNg by FluorEScence Signal
Description
Usage
Arguments
Value
View source: R/internal_fluo_est.R
Description
It estimates the chip characterisrics for BF image modelling
Usage
1
zoomInBF(img, pattern.search, ImgLimits, chip.type)
Arguments
img
Data matrix. The BF image data.
pattern.search
Integer. A cutoff to find horizontal and vertical lines on the chip.
ImgLimits
Integer. It instructs the algorithm to find spots in a certain central image area.
For example, for a 512 x 512 image with cutSides = 50, it will search for spots in the central
area [ImgLimits:(512-ImgLimits),ImgLimits:(512-ImgLimits)] of the image matrix.
chip.type
Character string. It specifies the type of Fluidigm chip to be analyzed.
Value
The locations of the straight lines on the chip
CONFESS documentation built on Nov. 8, 2020, 6:05 p.m.
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Description Usage Arguments Value
View source: R/internal_fluo_est.R
Description
It estimates the chip characterisrics for BF image modelling
Usage
1 | zoomInBF(img, pattern.search, ImgLimits, chip.type)
|
Arguments
img |
Data matrix. The BF image data. |
pattern.search |
Integer. A cutoff to find horizontal and vertical lines on the chip. |
ImgLimits |
Integer. It instructs the algorithm to find spots in a certain central image area. For example, for a 512 x 512 image with cutSides = 50, it will search for spots in the central area [ImgLimits:(512-ImgLimits),ImgLimits:(512-ImgLimits)] of the image matrix. |
chip.type |
Character string. It specifies the type of Fluidigm chip to be analyzed. |
Value
The locations of the straight lines on the chip
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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