plotImages: plotImages

In CONFESS: Cell OrderiNg by FluorEScence Signal

Description

It generates the plotted results.

Usage

plotImages(number, origImg, chaImgs, binChaImgs, stats, pix, log.transform,
  minDiff, sample, image.type)

Arguments

number	Integer. An index number that regulates the fluorescence estimation procedure.
origImg	Data matrix. The original BF image to be read and processed.
chaImgs	List. A list of the channel images (data matrices) of a sample.
binChaImgs	List. A list of binary segmented channel image data.
stats	List. A series of foreground and background statistics.
pix	List. A list of bright spot coordinates in the channels.
log.transform	Logical. If TRUE the image data are plotted in the log scale.
minDiff	Float. the mu_hat of the H0: image-to-noise ratio = log(foreground_signal) - log(background_signal) = mu_hat. Rejection of H0 implies that the identified spot is brighter than background. Default is 0.5.
sample	Character string. The sample ID.
image.type	Character string. A triplet of IDs to characterize the type of images under study. They refer to the ImageType part of the original image or txt file names.

Value

the plotted results and statistics of the signal-to-noise ratio

CONFESS documentation built on Nov. 8, 2020, 6:05 p.m.