Results: Results
In CONFESS: Cell OrderiNg by FluorEScence Signal

Example output from LocationMatrix

1	data("Results")

The format is: List of 2 $ Output :'data.frame': 14 obs. of 15 variables: ..$ SampleID : chr [1:14] "1772-062-248_A01" "1772-062-248_A02" "1772-062-248_A03" "1772-062-248_A04" ... ..$ X : num [1:14] 259 261 262 261 261 258 259 189 195 194 ... ..$ Y : num [1:14] 367 335 368 369 335 367 336 278 250 284 ... ..$ Size : num [1:14] 31 49 19 152 141 43 59 15 49 32 ... ..$ Estimation.Type: chr [1:14] "Fluorescence-based" "Chip.Pattern-based" "Fluorescence-based" "Fluorescence-based" ... ..$ fore_Green : num [1:14] 48.4 18.4 26.2 45.7 32.6 ... ..$ back_Green : num [1:14] 17.2 16.8 16.6 16.9 17.1 ... ..$ fore_Red : num [1:14] 219.1 19.8 86.5 18.4 48 ... ..$ back_Red : num [1:14] 17.5 17.8 17.5 18.1 18 ... ..$ Signal-to-Noise: Factor w/ 14 levels "0.141617112045591",..: 12 1 8 5 4 7 10 6 3 11 ... ..$ Pvalue : Factor w/ 14 levels "0.000360562783835169",..: 13 7 14 11 9 12 8 1 5 10 ... ..$ FDR : Factor w/ 12 levels "0.0001684989130688",..: 9 6 1 7 11 10 12 2 6 8 ... ..$ Out.Index : Factor w/ 2 levels "confidence","contamination": 1 2 1 1 1 1 1 1 1 1 ... ..$ Other.Spots : Factor w/ 3 levels "0","X = 128, Y = 358 (Green) | X = 191, Y = 277 (Red)",..: 1 1 3 1 1 1 1 1 1 1 ... ..$ Cells : num [1:14] 1 0 1 1 1 1 1 1 0 1 ... $ dateIndex: chr "WedApr611:21:282016"

example intermediates

CONFESS documentation built on Nov. 8, 2020, 6:05 p.m.