spotCenter: spotCenter
In CONFESS: Cell OrderiNg by FluorEScence Signal
Description
Usage
Arguments
Value
View source: R/internal_fluo_est.R
Description
It estimates a series of spot statistics on each channel.
Usage
1
spotCenter(img, foregroundCut, howbig, ImgLimits)
Arguments
img
Data matrix. The channel image data.
foregroundCut
Numeric vector. The binary segmentation image analysis cutoffs
for normalized image data. Pixels with normalized signals higher than the cutoff
belong to foreground.
howbig
Integer. An user defined value of the minimum expected spot size.
ImgLimits
a cutoff that determines where the spot is supposed to be found.
Value
A list of spot coordinate estimates
CONFESS documentation built on Nov. 8, 2020, 6:05 p.m.
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Description Usage Arguments Value
View source: R/internal_fluo_est.R
Description
It estimates a series of spot statistics on each channel.
Usage
1 | spotCenter(img, foregroundCut, howbig, ImgLimits)
|
Arguments
img |
Data matrix. The channel image data. |
foregroundCut |
Numeric vector. The binary segmentation image analysis cutoffs for normalized image data. Pixels with normalized signals higher than the cutoff belong to foreground. |
howbig |
Integer. An user defined value of the minimum expected spot size. |
ImgLimits |
a cutoff that determines where the spot is supposed to be found. |
Value
A list of spot coordinate estimates
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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