getCoordinates_stats: getCoordinates_stats
In CONFESS: Cell OrderiNg by FluorEScence Signal
Description
Usage
Arguments
Value
View source: R/internal_fluo_est.R
Description
It finds the spot coordinates using the spot centers or BF image modeling
Usage
1
getCoordinates_stats(centerR, centerG, minDiff, chaImgs, ll, ws, estCenter)
Arguments
centerR
Data matrix. The location statistics in one channel.
centerG
Data matrix. The location statistics in thew other channel.
minDiff
Float. the mu_hat of the H0: image-to-noise ratio =
log(foreground_signal) - log(background_signal) = mu_hat. Rejection of H0
implies that the identified spot is brighter than background. Default is 0.5.
chaImgs
List. A list of the channel images (data matrices) of a sample.
ll
Data matrix. An internal parameter specifying the spot center.
ws
List. An internal parameter specifying the spot center.
estCenter
Data matrix. The estimated spot center by BF image modelling.
Value
A series of location estimates includying the channel-specific spot center and spot areas
CONFESS documentation built on Nov. 8, 2020, 6:05 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
View source: R/internal_fluo_est.R
Description
It finds the spot coordinates using the spot centers or BF image modeling
Usage
1 | getCoordinates_stats(centerR, centerG, minDiff, chaImgs, ll, ws, estCenter)
|
Arguments
centerR |
Data matrix. The location statistics in one channel. |
centerG |
Data matrix. The location statistics in thew other channel. |
minDiff |
Float. the mu_hat of the H0: image-to-noise ratio = log(foreground_signal) - log(background_signal) = mu_hat. Rejection of H0 implies that the identified spot is brighter than background. Default is 0.5. |
chaImgs |
List. A list of the channel images (data matrices) of a sample. |
ll |
Data matrix. An internal parameter specifying the spot center. |
ws |
List. An internal parameter specifying the spot center. |
estCenter |
Data matrix. The estimated spot center by BF image modelling. |
Value
A series of location estimates includying the channel-specific spot center and spot areas
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.