scaleTomo: Scale data

In tomoda: Tomo-seq data analysis

Description

Scale the normalized read count in a SummarizedExperiment object.

Usage

scaleTomo(object)

Arguments

object

A SummarizedExperiment object.

Details

This function should be run for SummarizedExperiment object with normalized read count matrix. The normalized read counts of each gene are subjected to Z score transformation across sections.

Value

A SummarizedExperiment object with scaled read count matrix saved in assay 'scaled'.

Examples

data(zh.data)
zh <- createTomo(zh.data, scale=FALSE)
zh <- scaleTomo(zh)

tomoda documentation built on Nov. 8, 2020, 8:10 p.m.