cap_reads: cap_reads
In FrietzeLabUVM/peaksat: Peak saturation processing and analysis
cap_reads R Documentation
cap_reads
Description
create a subsampled version of bam_file that is approximately the number specified by max_reads
Usage
cap_reads(bam_file, max_reads, ncores = 1, out_dir = dirname(bam_file))
Arguments
bam_file
an indexed bam file
max_reads
target number of reads
ncores
number of cores to use for samtools view operation
Value
path to subsampled file
Examples
cap_reads
FrietzeLabUVM/peaksat documentation built on Oct. 20, 2023, 11:13 a.m.
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| cap_reads | R Documentation |
cap_reads
Description
create a subsampled version of bam_file that is approximately the number specified by max_reads
Usage
cap_reads(bam_file, max_reads, ncores = 1, out_dir = dirname(bam_file))
Arguments
bam_file |
an indexed bam file |
max_reads |
target number of reads |
ncores |
number of cores to use for samtools view operation |
Value
path to subsampled file
Examples
cap_reads
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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