make_submit_cmd: Title
In FrietzeLabUVM/peaksat: Peak saturation processing and analysis

make_submit_cmd

R Documentation

Title

Description

Title

Usage

make_submit_cmd(
  psc,
  treatment,
  control,
  submit_script = get_submit_script(),
  hold_jid = NULL
)

Examples

treat_bam = "/slipstream/galaxy/uploads/working/qc_framework/output/MCF10A_H3K4AC_R1/MCF10A_H3K4AC_R1.bam"
ctrl_bam = "/slipstream/galaxy/uploads/working/qc_framework/output/MCF10A_input_R1/MCF10A_input_R1.bam"
psc = peaksat_config()
cmd = make_submit_cmd(psc, treat_bam, ctrl_bam)
sub_out = system(cmd, intern = TRUE)
sub_out

FrietzeLabUVM/peaksat documentation built on Oct. 20, 2023, 11:13 a.m.