Pasquali-lab/UMI4Cats: UMI4Cats: Processing, analysis and visualization of UMI-4C chromatin contact data
UMI-4C is a technique that allows characterization of 3D chromatin interactions with a bait of interest, taking advantage of a sonication step to produce unique molecular identifiers (UMIs) that help remove duplication bias, thus allowing a better differential comparsion of chromatin interactions between conditions. This package allows processing of UMI-4C data, starting from FastQ files provided by the sequencing facility. It provides two statistical methods for detecting differential contacts and includes a visualization function to plot integrated information from a UMI-4C assay.
Getting started
Browse package contents
Package details |
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| Bioconductor views | Alignment Coverage Normalization Preprocessing QualityControl Sequencing Visualization |
| Maintainer | |
| License | Artistic-2.0 |
| Version | 1.13.0 |
| URL | https://github.com/Pasquali-lab/UMI4Cats |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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