daanhazelaar/katdetectr: Detection, Characterization and Visualization of Kataegis in Sequencing Data
Kataegis refers to the occurrence of regional hypermutation and is a phenomenon observed in a wide range of malignancies. Using changepoint detection katdetectr aims to identify putative kataegis foci from common data-formats housing genomic variants. Katdetectr has shown to be a robust package for the detection, characterization and visualisation of kataegis.
Getting started
Browse package contents
Package details |
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| Bioconductor views | Classification SNP Sequencing Software VariantAnnotation WholeGenome |
| Maintainer | |
| License | GPL-3 + file LICENSE |
| Version | 0.99.0 |
| URL | https://github.com/ErasmusMC-CCBC/katdetectr |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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