daanhazelaar/katdetectr: Detection, Characterization and Visualization of Kataegis in Sequencing Data

Kataegis refers to the occurrence of regional hypermutation and is a phenomenon observed in a wide range of malignancies. Using changepoint detection katdetectr aims to identify putative kataegis foci from common data-formats housing genomic variants. Katdetectr has shown to be a robust package for the detection, characterization and visualisation of kataegis.

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Package details

Bioconductor views Classification SNP Sequencing Software VariantAnnotation WholeGenome
LicenseGPL-3 + file LICENSE
URL https://github.com/ErasmusMC-CCBC/katdetectr
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
daanhazelaar/katdetectr documentation built on June 3, 2022, 4:58 a.m.