Biocview "WholeGenome"

Absolute Copy Number Estimation from Low-coverage Whole Genome Sequencing

Accurate Inference of Genetic Ancestry from Cancer Sequencing

A GAM based framework for analysis of ChIP-Seq data

Analysis of Copy Number Variation in Single-Cell-Sequencing Data

A normalization and copy number estimation method for single-cell DNA sequencing

A normalization method for Copy Number Aberration in cancer samples

A suite for analysis of rare genomic variants in whole genome sequencing data

A tool for differential expression analysis and DEGs based investigation to complex diseases by bi-clustering analysis

A Tool to Analyze and Design NGS Based Custom Gene Panels

BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverage

cfDNAPro extracts and Visualises biological features from whole genome sequencing data of cell-free DNA

Client for GREAT Analysis

Clonal ordering and visualization

CNproScan detects and annotates CNVs in bacterial genomes.

Computes estimates of the probability of related individuals sharing a rare variant

DataSHIELD client site Omics association functions.

DataSHIELD server site Omic functions

DChIPRep - Analysis of chromatin modification ChIP-Seq data with replication

Detection and inference of differentially methylated regions from Whole Genome Bisulfite Sequencing

Detection, Characterization and Visualization of Kataegis in Sequencing Data

Detection of Differentially Methylated Regions

Differential methylation anlsysis for bisulfite sequencing data

Estimate the cell composition of whole blood in DNA methylation samples

Fragmen-length analysis package from high-throughput sequencing of cell-free DNA (cfDNA)

GEM: fast association study for the interplay of Gene, Environment and Methylation

Gene Break Detection

Global Test for Counts

GREAT Analysis - Functional Enrichment on Genomic Regions

Identification of cancer cell lines based on their weighted mutational/ variational fingerprint

Improves Early Build Genome Assemblies using Strand-Seq Data

Inference And Analysis Of Synteny Networks

Integrated Copy Number Variation detection

LowMACA - Low frequency Mutation Analysis via Consensus Alignment

Methylation array and sequencing spatial analysis methods

Mining, Calling, and Importing Epigenomic Peaks in R

NGScopy: Detection of Copy Number Variations in Next Generation Sequencing sequencing

Perform methylation analysis

Perform methylation analysis and facilitates differential expression analyses

Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multiple Generations to a Treatment Effect

Position-Dependent Kernel Association Test

Pre-process DNA Copy Number (CN) Data for Detection of CN Events

Profiles and targets subpopulations with high Treatment EEFects

R package for Manhattan Plots

samExploreR package: high-performance read summarisation to count vectors with avaliability of sequencing depth reduction simulation

Simulating Whole-Genome Inherited Bisulphite Sequencing Data

Standardise summary statistics from GWAS

Strength of Selected Codon Usage

Subclonal copy number and LOH prediction from whole genome sequencing of tumours

Summix2: A suite of methods to estimate, adjust, and leverage substructure in genetic summary data

Supervised mutational signatures

The slim version of signac

This Package Helps Characterise and Visualise Whole Genome Sequencing Data from Liquid Biopsy

Tools for curating, analyzing, and manipulating biological sequences

TVTB: The VCF Tool Box

Visualization of genomic structural variants

Biocview "WholeGenome"

R Package Documentation

Browse R Packages

We want your feedback!