Biocview "WholeGenome"

A GAM based framework for analysis of ChIP-Seq data
Analysis of Copy Number Variation in Single-Cell-Sequencing Data
Analysis of Copy Number Variation in Single-Cell-Sequencing Data
Analysis of Copy Number Variation in Single-Cell-Sequencing Data
A normalization method for Copy Number Aberration in cancer samples
A normalization method for Copy Number Aberration in cancer samples
A suite for analysis of rare genomic variants in whole genome sequencing data
A suite for analysis of rare genomic variants in whole genome sequencing data
A tool for differential expression analysis and DEGs based investigation to complex diseases by bi-clustering analysis
BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverage
BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverage
Client for GREAT Analysis
Client for GREAT Analysis
Client for GREAT Analysis
Client for GREAT Analysis
Clonal ordering and visualization
Computes estimates of the probability of related individuals sharing a rare variant
Computes estimates of the probability of related individuals sharing a rare variant
DChIPRep - Analysis of chromatin modification ChIP-Seq data with replication
DChIPRep - Analysis of chromatin modification ChIP-Seq data with replication
Detection and inference of differentially methylated regions from Whole Genome Bisulfite Sequencing
Detection of Differentially Methylated Regions
Detection of Differentially Methylated Regions
Detection of Differentially Methylated Regions
Estimate the cell composition of whole blood in DNA methylation samples
GEM: fast association study for the interplay of Gene, Environment and Methylation
Gene Break Detection
Gene Break Detection
Identification of cancer cell lines based on their weighted mutational or variational fingerprint
Identification of cancer cell lines based on their weighted mutational or variational fingerprint
Improves Early Build Genome Assemblies using Strand-Seq Data
Improves Early Build Genome Assemblies using Strand-Seq Data
Improves Early Build Genome Assemblies using Strand-Seq Data
LowMACA - Low frequency Mutation Analysis via Consensus Alignment
LowMACA - Low frequency Mutation Analysis via Consensus Alignment
NGScopy: Detection of Copy Number Variations in Next Generation Sequencing sequencing
NGScopy: Detection of Copy Number Variations in Next Generation Sequencing sequencing
Perform methylation analysis
Perform methylation analysis
Perform methylation analysis
Permutation-Based Analysis associating Conserved Differentially Methylated Elements from One Generation to the Next to a Treatment Effect
Permutation-Based Analysis associating Conserved Differentially Methylated Elements from One Generation to the Next to a Treatment Effect
Position-Dependent Kernel Association Test
Position-Dependent Kernel Association Test
R package for Manhattan Plots
R package for Manhattan Plots
samExploreR package: high-performance read summarisation to count vectors with avaliability of sequencing depth reduction simulation
samExploreR package: high-performance read summarisation to count vectors with avaliability of sequencing depth reduction simulation
samExploreR package: high-performance read summarisation to count vectors with avaliability of sequencing depth reduction simulation
Simulating Whole-Genome Inherited Bisulphite Sequencing Data
Simulating Whole-Genome Inherited Bisulphite Sequencing Data
Simulating Whole-Genome Inherited Bisulphite Sequencing Data
Strength of Selected Codon Usage
Strength of Selected Codon Usage
Subclonal copy number and LOH prediction from whole genome sequencing of tumours
Subclonal copy number and LOH prediction from whole genome sequencing of tumours
Subclonal copy number and LOH prediction from whole genome sequencing of tumours
Testing for association between RNA-Seq and high-dimensional data
Testing for association between RNA-Seq and high-dimensional data
Testing for association between RNA-Seq and high-dimensional data
Tools for curating, analyzing, and manipulating biological sequences
Tools for curating, analyzing, and manipulating biological sequences
TVTB: The VCF Tool Box
TVTB: The VCF Tool Box
TVTB: The VCF Tool Box
TVTB: The VCF Tool Box