RareVariantVis: Visualization of rare variants in whole genome sequencing data

Genomic variants can be analyzed and visualized using many tools. Unfortunately, number of tools for global interrogation of variants is limited. Package RareVariantVis aims to present genomic variants (especially rare ones) in a global, per chromosome way. Visualization is performed in two ways - standard that outputs png figures and interactive that uses JavaScript d3 package. Interactive visualization allows to analyze trio/family data, for example in search for causative variants in rare Mendelian diseases.

AuthorTomasz Stokowy
Date of publicationNone
MaintainerTomasz Stokowy <tomasz.stokowy@k2.uib.no>
LicenseArtistic-2.0
Version1.8.0

View on Bioconductor

Files

RareVariantVis/DESCRIPTION
RareVariantVis/NAMESPACE
RareVariantVis/R
RareVariantVis/R/chromosomeVis.R RareVariantVis/R/movingAverage.R RareVariantVis/R/multipleVis.R RareVariantVis/R/rareVariantVis.R RareVariantVis/R/trioVis.R
RareVariantVis/build
RareVariantVis/build/vignette.rds
RareVariantVis/data
RareVariantVis/data/CentromeresHg19.txt
RareVariantVis/data/FatherRareVariantsChr21.txt
RareVariantVis/data/MotherRareVariantsChr21.txt
RareVariantVis/data/SonRareVariantsChr21.txt
RareVariantVis/inst
RareVariantVis/inst/doc
RareVariantVis/inst/doc/RareVariantsVis.R
RareVariantVis/inst/doc/RareVariantsVis.Rnw
RareVariantVis/inst/doc/RareVariantsVis.pdf
RareVariantVis/inst/extdata
RareVariantVis/man
RareVariantVis/man/CentromeresHg19.Rd RareVariantVis/man/FatherRareVariantsChr21.Rd RareVariantVis/man/MotherRareVariantsChr21.Rd RareVariantVis/man/SonRareVariantsChr21.Rd RareVariantVis/man/chromosomeVis.Rd RareVariantVis/man/movingAverage.Rd RareVariantVis/man/multipleVis.Rd RareVariantVis/man/rareVariantVis.Rd RareVariantVis/man/trioVis.Rd
RareVariantVis/tests
RareVariantVis/vignettes
RareVariantVis/vignettes/RareVariantsVis.Rnw

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