NGScopy: NGScopy: Detection of Copy Number Variations in Next Generation Sequencing sequencing

NGScopy provides a quantitative caller for detecting copy number variations in next generation sequencing (NGS), including whole genome sequencing (WGS), whole exome sequencing (WES) and targeted panel sequencing (TPS). The caller can be parallelized by chromosomes to use multiple processors/cores on one computer.

Package details

AuthorXiaobei Zhao [aut, cre, cph]
Bioconductor views CopyNumberVariation DNASeq ExomeSeq ImmunoOncology Sequencing TargetedResequencing WholeGenome
MaintainerXiaobei Zhao <xiaobei@binf.ku.dk>
LicenseGPL (>=2)
Version1.17.1
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("NGScopy")

Try the NGScopy package in your browser

Any scripts or data that you put into this service are public.

NGScopy documentation built on May 6, 2019, 2:43 a.m.