NGScopy: NGScopy: Detection of Copy Number Variations in Next Generation Sequencing sequencing

NGScopy provides a quantitative caller for detecting copy number variations in next generation sequencing (NGS), including whole genome sequencing (WGS), whole exome sequencing (WES) and targeted panel sequencing (TPS). The caller can be parallelized by chromosomes to use multiple processors/cores on one computer.

AuthorXiaobei Zhao [aut, cre, cph]
Date of publicationNone
MaintainerXiaobei Zhao <xiaobei@binf.ku.dk>
LicenseGPL (>=2)
Version1.8.0

View on Bioconductor

Files

NGScopy/DESCRIPTION
NGScopy/NAMESPACE
NGScopy/NEWS
NGScopy/R
NGScopy/R/NGScopy-package.R NGScopy/R/archive.R NGScopy/R/interface-to-cran-changepoint.R NGScopy/R/ngscopy-internal.R NGScopy/R/ngscopy-test.R NGScopy/R/ngscopy.R
NGScopy/build
NGScopy/build/vignette.rds
NGScopy/inst
NGScopy/inst/CITATION
NGScopy/inst/bin
NGScopy/inst/bin/ngscopy
NGScopy/inst/doc
NGScopy/inst/doc/NGScopy-vignette.R
NGScopy/inst/doc/NGScopy-vignette.Rnw
NGScopy/inst/doc/NGScopy-vignette.pdf
NGScopy/inst/extdata
NGScopy/inst/extdata/hg19_chr6_0_171115067.txt
NGScopy/inst/tests
NGScopy/inst/tests/ngscopy_unittest.R
NGScopy/man
NGScopy/man/NGScopy-class.Rd NGScopy/man/NGScopy-package.Rd NGScopy/man/df.to.gr.Rd NGScopy/man/help_segmtype.Rd NGScopy/man/ngscopy_cmdline_example.Rd NGScopy/man/ngscopy_unittest.Rd NGScopy/man/parse_segmtype.Rd NGScopy/man/read_regions.Rd
NGScopy/vignettes
NGScopy/vignettes/NGScopy-vignette.Rnw
NGScopy/vignettes/NGScopy-vignette.bib
NGScopy/vignettes/Xvignette.sty
NGScopy/vignettes/bioinfo.sty
NGScopy/vignettes/ngscopy-case0
NGScopy/vignettes/ngscopy-case0/27_N8
NGScopy/vignettes/ngscopy-case0/27_N8/ngscopy_out.pdf
NGScopy/vignettes/ngscopy-case0/90_N8
NGScopy/vignettes/ngscopy-case0/90_N8/ngscopy_out.pdf
NGScopy/vignettes/ngscopy-case1.R
NGScopy/vignettes/ngscopy-case1b
NGScopy/vignettes/ngscopy-case1b-cmdline.out
NGScopy/vignettes/ngscopy-case1b-cmdline.sh
NGScopy/vignettes/ngscopy-case1b/ngscopy_out.pdf
NGScopy/vignettes/ngscopy-case1c
NGScopy/vignettes/ngscopy-case1c/ngscopy_out.pdf
NGScopy/vignettes/ngscopy-case2.R
NGScopy/vignettes/ngscopy-case2b
NGScopy/vignettes/ngscopy-case2b/27_N8
NGScopy/vignettes/ngscopy-case2b/27_N8/ngscopy_out.pdf
NGScopy/vignettes/ngscopy-case2b/90_N8
NGScopy/vignettes/ngscopy-case2b/90_N8/ngscopy_out.pdf
NGScopy/vignettes/ngscopy.x

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