NGScopy provides a quantitative caller for detecting copy number variations in next generation sequencing (NGS), including whole genome sequencing (WGS), whole exome sequencing (WES) and targeted panel sequencing (TPS). The caller can be parallelized by chromosomes to use multiple processors/cores on one computer.
|Author||Xiaobei Zhao [aut, cre, cph]|
|Date of publication||None|
|Maintainer||Xiaobei Zhao <firstname.lastname@example.org>|
df.to.gr: Convert a data.frame to a GRanges object
help_segmtype: Get help for segmentation functions
NGScopy-class: Detection of copy number variations in next generation...
ngscopy_cmdline_example: Run an example of NGScopy at UNIX-like command line
NGScopy-package: NGScopy: Detection of copy number variations in next...
ngscopy_unittest: A wrapper to run unit testing of NGScopy
parse_segmtype: Parse the type of segmentation
read_regions: Read regions from a data.frame, a file or a connection.