Biocview "DNASeq"

Absolute Copy Number Estimation from Low-coverage Whole Genome Sequencing
Absolute Copy Number Estimation from Low-coverage Whole Genome Sequencing
Analysis Of Differential Abundance Taking Sample Variation Into Account
Analysis Of Differential Abundance Taking Sample Variation Into Account
An Easy-to-use Systematic pipeline for ATACseq data analysis
An Easy-to-use Systematic pipeline for ATACseq data analysis
An Easy-to-use Systematic pipeline for ATACseq data analysis
An Easy-to-use Systematic pipeline for ATACseq data analysis
An Easy-to-use Systematic pipeline for ATACseq data analysis
A normalization and copy number estimation method for single-cell DNA sequencing
A normalization and copy number estimation method for single-cell DNA sequencing
A normalization method for Copy Number Aberration in cancer samples
A Software Suite for Shallow Sequencing Copy Number Analysis
Association analysis of genomic regions based on permutation tests
Association analysis of genomic regions based on permutation tests
ATAC-seq Quality Control
ATAC-seq Quality Control
ATAC-seq Quality Control
A tool for differential expression analysis and DEGs based investigation to complex diseases by bi-clustering analysis
A tool for differential expression analysis and DEGs based investigation to complex diseases by bi-clustering analysis
Bioinformatics pipelines based on Rcwl
Bioinformatics pipelines based on Rcwl
Call wide peaks for sequencing data
Call wide peaks for sequencing data
Call wide peaks for sequencing data
Clonal ordering and visualization
coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methylation patterns
coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methylation patterns
coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methylation patterns.
Create Copy-Number Plots using karyoploteR functionality
Create Copy-Number Plots using karyoploteR functionality
Cut rDNA Sequences Into Domains Using Covariance Models
Decomposition of individual tumors into mutational signatures by signature refitting
Decomposition of individual tumors into mutational signatures by signature refitting
Differential Expression Analysis for RNA-seq data through a robust variance component test
Dissect cancer evolution from multi-region derived tumor biopsies via somatic mutations
Dual redundant reference sequencing
Find breakpoints in Strand-seq data
Find breakpoints in Strand-seq data
Find breakpoints in Strand-seq data
Gene Break Detection
Genomic Visualizations in R
Genomic Visualizations in R
Identifies false positives of CNV calling tools by using SNV calls
Identifies false positives of CNV calling tools by using SNV calls
Infers clonal composition of a tumor
Interface to Call Programs from Infernal RNA Covariance Model Package
Mixture Nested Effects Models
Mixture Nested Effects Models
Mutation Mapping Analysis Pipeline for Pooled RNA-Seq
Mutation Mapping Analysis Pipeline for Pooled RNA-Seq
Mutation Mapping Analysis Pipeline for Pooled RNA-Seq
NGScopy: Detection of Copy Number Variations in Next Generation Sequencing sequencing
Plot customizable linear genomes displaying arbitrary data
Plot customizable linear genomes displaying arbitrary data
Quantifying Differential Features
Quantitative DNA Sequencing for Chromosomal Aberrations
Quantitative DNA Sequencing for Chromosomal Aberrations
Quasispecies Diversity
Quasispecies Diversity
samExploreR package: high-performance read summarisation to count vectors with avaliability of sequencing depth reduction simulation
samExploreR package: high-performance read summarisation to count vectors with avaliability of sequencing depth reduction simulation
Sample Size Calculation for RNA-Seq Experimental Design
Sample Size Calculation for RNA-Seq Experimental Design
Segvis: A package for visualization of high throughput sequencing data along genomic segments
Semi-parametric simulation tool for bulk and single-cell RNA sequencing data
Semi-Supervised Mixture Model
Semi-Supervised Mixture Model
Subclonal copy number and LOH prediction from whole genome sequencing of tumours
Subclonal copy number and LOH prediction from whole genome sequencing of tumours
Subclonal copy number and LOH prediction from whole genome sequencing of tumours
Summarize, Analyze and Visualize MAF Files
Summarize, Analyze and Visualize MAF Files
Summarize, Analyze and Visualize MAF Files
"TCGAbiolinksGUI: A Graphical User Interface to analyze cancer molecular and clinical data"
"TCGAbiolinksGUI: A Graphical User Interface to analyze cancer molecular and clinical data"
TVTB: The VCF Tool Box
TVTB: The VCF Tool Box
Unbiased Extraction of Single Cell Identity using Multiple Correspondence Analysis
Unbiased Extraction of Single Cell Identity using Multiple Correspondence Analysis
uSORT: A self-refining ordering pipeline for gene selection
uSORT: A self-refining ordering pipeline for gene selection
Visual Exploration of Omic Datasets Using a Shiny App
Visual Exploration of Omic Datasets Using a Shiny App
Visual Exploration of Omic Datasets Using a Shiny App
Yet Another Package for Signature Analysis
Yet Another Package for Signature Analysis
Yet Another Package for Signature Analysis