omicplotR: Visual Exploration of Omic Datasets Using a Shiny App

A Shiny app for visual exploration of omic datasets as compositions, and differential abundance analysis using ALDEx2. Useful for exploring RNA-seq, meta-RNA-seq, 16s rRNA gene sequencing with visualizations such as principal component analysis biplots (coloured using metadata for visualizing each variable), dendrograms and stacked bar plots, and effect plots (ALDEx2). Input is a table of counts and metadata file (if metadata exists), with options to filter data by count or by metadata to remove low counts, or to visualize select samples according to selected metadata.

Package details

AuthorDaniel Giguere [aut, cre], Jean Macklaim [aut], Greg Gloor [aut]
Bioconductor views Bayesian DNASeq DifferentialExpression GUI GeneExpression ImmunoOncology Metagenomics Microbiome RNASeq Sequencing Software Transcriptomics Visualization
MaintainerDaniel Giguere <>
LicenseMIT + file LICENSE
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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omicplotR documentation built on Nov. 8, 2020, 11:12 p.m.