Biocview "Microbiome"

Accurate, high-resolution sample inference from amplicon sequencing data
Accurate, high-resolution sample inference from amplicon sequencing data
A lecture on sequence count data
A metagenomic pipeline for systems biology
Analysis for short time-series data
Analysis for short time-series data
Analysis for short time-series data
Analysis Of Differential Abundance Taking Sample Variation Into Account
Analysis Of Differential Abundance Taking Sample Variation Into Account
Analyze Microbiome Data
An interface package for the BIOM file format
An interface package for the BIOM file format
An interface package for the BIOM file format
an R package for analysis, visualization and biomarker discovery of microbiome
an R package for analysis, visualization and biomarker discovery of microbiome
an R package for analysis, visualization and biomarker discovery of microbiome
an R package for analysis, visualization and biomarker discovery of microbiome
Compare Characteristic Features of Count Data Sets
Compare Characteristic Features of Count Data Sets
Comparing Differential Abundance/Expression Methods
Compositional omics model based visual integration
Compositional omics model based visual integration
Compositional omics model based visual integration
Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data
Exploration of marker-gene sequence taxonomic annotations
Exploration of marker-gene sequence taxonomic annotations
Fit row-column association models with the negative binomial distribution for the microbiome
Fit row-column association models with the negative binomial distribution for the microbiome
Functions to help analyze data as phyloseq objects
Functions to help analyze data as phyloseq objects
Generalized correlation analysis and model construction strategy for metabolome and microbiome
Generalized correlation analysis and model construction strategy for metabolome and microbiome
Greengenes 13.5 16S rRNA Database Annotation Data
Greengenes 13.8 85% similarity OTU threshold 16S rRNA Database Annotation Data
Greengenes 13.8 88% similarity OTU threshold 16S rRNA Database Annotation Data
Greengenes 13.8 91% similarity OTU threshold 16S rRNA Database Annotation Data
Greengenes 13.8 94% similarity OTU threshold 16S rRNA Database Annotation Data
Greengenes 13.8 97% similarity OTU threshold 16S rRNA Database Annotation Data
Handling and analysis of high-throughput microbiome census data
Handling and analysis of high-throughput microbiome census data
Identify Contaminants in Marker-gene and Metagenomics Sequencing Data
Identify Contaminants in Marker-gene and Metagenomics Sequencing Data
Interactive microbiome analysis toolkit
Interactive microbiome analysis toolkit
Interface to the RDP Classifier
Maaslin2
Maaslin2
Maaslin2
Mapping of Phyloseq Information
Meta-analysis for the metagenomic read counts data from different cohorts
Meta-analysis Methods with Uniform Pipeline for Heterogeneity in Microbiome Studies
Meta-analysis Methods with Uniform Pipeline for Heterogeneity in Microbiome Studies
Metabarcoding and microbiome analysis using multiple amplicons
Microbiome Analytics
Microbiome Analytics
Microbiome Differential Abundance Simulation
Omics Longitudinal Differential Analysis
Omics Longitudinal Differential Analysis
PathoStat Statistical Microbiome Analysis Package
PathoStat Statistical Microbiome Analysis Package
Permutation filtration for microbiome data
Permutation filtration for microbiome data
Phylogenetic partitioning based ILR transform for metagenomics data
Phylogenetic partitioning based ILR transform for metagenomics data
qiime2R
Resampling Collapsed Null Distributions for Simultaneous Inference
Resampling Collapsed Null Distributions for Simultaneous Inference
Resampling Collapsed Null Distributions for Simultaneous Inference
Ribosomal Database Project 16S rRNA release 11.5 Annotation Data
SILVA SSR rRNA release 128.1 Annotation Data
SILVA SSR rRNA release 128.1 Annotation Data
SILVA SSR rRNA release 128.1 Annotation Data
Sparse Data Observations for Simulating Synthetic Abundance
Sparse Data Observations for Simulating Synthetic Abundance
Statistical analysis for sparse high-throughput sequencing
Statistical analysis for sparse high-throughput sequencing
Statistical Inference of Associations between Microbial Communities And host phenoTypes
Statistical Inference of Associations between Microbial Communities And host phenoTypes
Statistical Inference of Associations between Microbial Communities And host phenoTypes
Tools for curating, analyzing, and manipulating biological sequences
Tools for microbiome analysis
Tree Aggregation
Visual Exploration of Omic Datasets Using a Shiny App
Visual Exploration of Omic Datasets Using a Shiny App
Visual Exploration of Omic Datasets Using a Shiny App