ANCOMBC: Analysis of compositions of microbiomes with bias correction

ANCOMBC is a package for normalizing the microbial observed abundance data due to unequal sampling fractions across samples, and identifying taxa (e.g. phyla, families, genera, species, etc.) that are differentially abundant with respect to the covariate of interest (e.g. study groups) between two or more groups of multiple samples.

Package details

AuthorHuang Lin [cre, aut] (<https://orcid.org/0000-0002-4892-7871>), Shyamal Das Peddada [aut] (<https://orcid.org/0000-0002-5014-6513>)
Bioconductor views DifferentialExpression Microbiome Normalization Sequencing Software
MaintainerHuang Lin <HUL40@pitt.edu>
LicenseArtistic-2.0
Version1.0.5
URL https://github.com/FrederickHuangLin/ANCOMBC
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ANCOMBC")

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ANCOMBC documentation built on March 11, 2021, 2 a.m.