The purpose of this package is to perform Statistical Microbiome Analysis on metagenomics results from sequencing data samples. In particular, it supports analyses on the PathoScope generated report files. PathoStat provides various functionalities including Relative Abundance charts, Diversity estimates and plots, tests of Differential Abundance, Time Series visualization, and Core OTU analysis.
|Author||Solaiappan Manimaran <[email protected]>, Matthew Bendall <[email protected]>, Sandro Valenzuela Diaz <[email protected]>, Eduardo Castro <[email protected]>, Tyler Faits <[email protected]>, W. Evan Johnson <[email protected]>|
|Bioconductor views||GraphAndNetwork Metagenomics Microarray Microbiome PatternLogic PrincipalComponent RNASeq Sequencing Software Visualization|
|Maintainer||Solaiappan Manimaran <[email protected]>|
|License||GPL (>= 2)|
|Package repository||View on Bioconductor|
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