PathoStat: PathoStat Statistical Microbiome Analysis Package

The purpose of this package is to perform Statistical Microbiome Analysis on metagenomics results from sequencing data samples. In particular, it supports analyses on the PathoScope generated report files. PathoStat provides various functionalities including Relative Abundance charts, Diversity estimates and plots, tests of Differential Abundance, Time Series visualization, and Core OTU analysis.

Package details

AuthorSolaiappan Manimaran <>, Matthew Bendall <>, Sandro Valenzuela Diaz <>, Eduardo Castro <>, Tyler Faits <>, Yue Zhao <>, Anthony Nicholas Federico <>, W. Evan Johnson <>
Bioconductor views GraphAndNetwork ImmunoOncology Metagenomics Microarray Microbiome PatternLogic PrincipalComponent RNASeq Sequencing Software Visualization
MaintainerSolaiappan Manimaran <>, Yue Zhao <>
LicenseGPL (>= 2)
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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PathoStat documentation built on Nov. 8, 2020, 5:28 p.m.