Reads the data from PathoScope reports and returns a list of final guess relative abundance and count data

Description

Reads the data from PathoScope reports and returns a list of final guess relative abundance and count data

Usage

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readPathoscopeData(input_dir = ".",
    pathoreport_file_suffix = "-sam-report.tsv")

Arguments

input_dir

Directory where the tsv files from PathoScope are located

pathoreport_file_suffix

PathoScope report files suffix

Value

List of final guess relative abundance and count data

Examples

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example_data_dir <- system.file("example/data", package = "PathoStat")
readPathoscopeData(input_dir=example_data_dir)

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