getSignatureFromMultipleGlmnet: Use Lasso to do feature selection

In PathoStat: PathoStat Statistical Microbiome Analysis Package

Description

Use Lasso to do feature selection

Usage

getSignatureFromMultipleGlmnet(df.input, target.vec, nfolds = 10,
  logisticRegression = TRUE, nRun = 100, alpha = 1)

Arguments

df.input	Row is sample, column is feature. Required
target.vec	y vector. Required
nfolds	glmnet CV nfolds
logisticRegression	doing logistic regression or linear regression.
nRun	number of glmnet runs
alpha	same as in glmnet

Value

signature

Examples

data('iris')
getSignatureFromMultipleGlmnet(iris[,1:4],
c(rep(1,100), rep(0,50)), nfolds = 3, nRun = 10)

PathoStat documentation built on Nov. 8, 2020, 5:28 p.m.