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PathoStat is a R shiny package, designed for performing Statistical Microbiome Analysis on metagenomics results from sequencing data samples. In particular, it supports analyses on the PathoScope generated report files.
The package includes:
To begin, install Bioconductor and simply run the following to automatically install PathoStat and all the dependencies as follows.
If you want to install the latest development version of PathoStat from Github, use devtools to install it as follows:
require(devtools) install_github("mani2012/PathoStat", build_vignettes=TRUE)
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