runPathoStat: Statistical Microbiome Analysis on the pathostat input and...

Description Usage Arguments Value Examples

View source: R/pathoStat.R

Description

Statistical Microbiome Analysis on the pathostat input and generates a html report and produces interactive shiny app plots

Usage

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runPathoStat(pstat = NULL, report_dir = ".",
  report_option_binary = "111111111", interactive = TRUE)

Arguments

pstat

phyloseq extension pathostat object

report_dir

Output report directory path

report_option_binary

9 bits Binary String representing the plots to display and hide in the report

interactive

when TRUE, opens the interactive shinyApp

Value

outputfile The output file with all the statistical plots

Examples

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PathoStat documentation built on June 3, 2018, 6 p.m.