runPathoStat: Statistical Microbiome Analysis on the pathostat input and...

In PathoStat: PathoStat Statistical Microbiome Analysis Package

Description

Statistical Microbiome Analysis on the pathostat input and generates a html report and produces interactive shiny app plots

Usage

runPathoStat(pstat = NULL, report_dir = ".",
  report_option_binary = "111111111", interactive = TRUE)

Arguments

pstat	phyloseq extension pathostat object
report_dir	Output report directory path
report_option_binary	9 bits Binary String representing the plots to display and hide in the report
interactive	when TRUE, opens the interactive shinyApp

Value

outputfile The output file with all the statistical plots

Examples

runPathoStat(interactive = FALSE)

PathoStat documentation built on Nov. 8, 2020, 5:28 p.m.