findTaxonomy300: Find the taxonomy for maximum 300 tids

In PathoStat: PathoStat Statistical Microbiome Analysis Package

Description

Find the taxonomy for maximum 300 tids

Usage

findTaxonomy300(tids)

Arguments

tids	Given taxonomy ids

Value

taxondata Data with the taxonomy information

Examples

example_data_dir <- system.file("example/data", package = "PathoStat")
pathoreport_file_suffix <- "-sam-report.tsv"
datlist <- readPathoscopeData(example_data_dir, 
pathoreport_file_suffix, input.files.name.vec = as.character(1:6))
dat <- datlist$data
ids <- rownames(dat)
tids <- unlist(lapply(ids, FUN = grepTid))
# taxonLevels <- findTaxonomy300(tids[1:5])

PathoStat documentation built on Nov. 8, 2020, 5:28 p.m.