findTaxonomy: Find the taxonomy for each taxon ids

Description Usage Arguments Value Examples

Description

Find the taxonomy for each taxon ids

Usage

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Arguments

tids

Given taxonomy ids

Value

taxondata Data with the taxonomy information

Examples

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example_data_dir <- system.file("example/data", package = "PathoStat")
pathoreport_file_suffix <- "-sam-report.tsv"
datlist <- readPathoscopeData(example_data_dir, pathoreport_file_suffix)
dat <- datlist$data
ids <- rownames(dat)
tids <- unlist(lapply(ids, FUN = grepTid))
taxonLevels <- findTaxonomy(tids[1:5])


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