phyloseq_to_edgeR: Convert phyloseq OTU count data into DGEList for edgeR...

Description Usage Arguments Value Examples

View source: R/differentialAnalysis.R

Description

Further details.

Usage

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phyloseq_to_edgeR(physeq, group, method = "RLE", ...)

Arguments

physeq

(Required).

group

(Required). A character vector or factor giving the experimental group/condition for each sample/library.

method

(Optional).

...

Additional arguments passed on to

Value

dispersion

Examples

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data_dir_test <- system.file("data", package = "PathoStat")
pstat_test <- loadPstat(indir=data_dir_test,
infileName="pstat_data_2_L1.rda")
phyloseq_to_edgeR(pstat_test, group="Sex")

PathoStat documentation built on Nov. 9, 2018, 6 p.m.