Biocview "Metagenomics"

Accurate, high-resolution sample inference from amplicon sequencing data

A lecture on sequence count data

Analysis Of Differential Abundance Taking Sample and Scale Variation Into Account

Analysis Of Differential Abundance Taking Sample Variation Into Account

Analyze Microbiome Data

An interface package for the BIOM file format

A Statistical Model for Describing and Simulating Microbial Community Profiles

Bayesian ANalysis Of Compositional Covariance

Benchmark of differential abundance methods on microbiome data

Calculate, visualize and analyse overlap between genomic regions

ccrepe_and_nc.score

Check Multiple Covariates for Potenial Confounding Effects

Codon Usage Analysis and Prediction of Gene Expressivity

Comparing Differential Abundance/Expression Methods

Competitive Balances for Taxonomic Enrichment Analysis in R

Compositional omics model based visual integration

Cut rDNA Sequences Into Domains Using Covariance Models

Data analysis toolkits in metagenomics

Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data

Easy Use R

Exploration of marker-gene sequence taxonomic annotations

FASTQ2OTU: Automate microbiome analyses

Fit row-column association models with the negative binomial distribution for the microbiome

Functions to help analyze data as phyloseq objects

Greengenes 13.8 85% similarity OTU threshold 16S rRNA Database Annotation Data

Greengenes 13.8 88% similarity OTU threshold 16S rRNA Database Annotation Data

Greengenes 13.8 91% similarity OTU threshold 16S rRNA Database Annotation Data

Greengenes 13.8 94% similarity OTU threshold 16S rRNA Database Annotation Data

Greengenes 13.8 97% similarity OTU threshold 16S rRNA Database Annotation Data

Handling and analysis of high-throughput microbiome census data

Identify Contaminants in Marker-gene and Metagenomics Sequencing Data

Interactive microbiome analysis toolkit

Interface to Call Programs from Infernal RNA Covariance Model Package

Maaslin

Maaslin2

Mapping of Phyloseq Information

Meta-analysis Methods with Uniform Pipeline for Heterogeneity in Microbiome Studies

Metabarcoding and microbiome analysis using multiple amplicons

Microbiome Analytics

microbiome biomarker analysis toolkit

Microbiome Exploration App

Miscellaneous Functions for Metabarcoding Analysis

Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolite Profiles

"Multivariable Association Discovery in Population-scale Meta-omics Studies"

Omics Data Integration Project

PathoStat Statistical Microbiome Analysis Package

Permutation filtration for microbiome data

Phylogenetic partitioning based ILR transform for metagenomics data

Resampling Collapsed Null Distributions for Simultaneous Inference

Ribosomal Database Project 16S rRNA release 11.5 Annotation Data

R interface to EBI MGnify metagenomics resource

R Interface to the metaviz web app for interactive metagenomics data analysis and visualization

R-side access to published microbial signatures from BugSigDB

SILVA SSR rRNA release 128.1 Annotation Data

Sparse Data Observations for Simulating Synthetic Abundance

Statistical analysis for sparse high-throughput sequencing

Statistical Inference of Associations between Microbial Communities And host phenoTypes

Time-Course Multi-Omics data integration

Visual Exploration of Omic Datasets Using a Shiny App

Biocview "Metagenomics"

R Package Documentation

Browse R Packages

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