The purpose of this package is to perform Statistical Microbiome Analysis on metagenomics results from sequencing data samples. In particular, it supports analyses on the PathoScope generated report files. PathoStat provides various functionalities including Relative Abundance charts, Diversity estimates and plots, tests of Differential Abundance, Time Series visualization, and Core OTU analysis.
|Author||Solaiappan Manimaran <[email protected]>, Matthew Bendall <[email protected]>, Sandro Valenzuela Diaz <[email protected]>, Eduardo Castro <[email protected]>, Tyler Faits <[email protected]>, Yue Zhao <[email protected]>, W. Evan Johnson <[email protected]>|
|Bioconductor views||GraphAndNetwork Metagenomics Microarray Microbiome PatternLogic PrincipalComponent RNASeq Sequencing Software Visualization|
|Maintainer||Solaiappan Manimaran <[email protected]>, Yue Zhao <[email protected]>|
|License||GPL (>= 2)|
|Package repository||View on GitHub|
Install the latest version of this package by entering the following in R:
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.