mani2012/PathoStat: PathoStat Statistical Microbiome Analysis Package

The purpose of this package is to perform Statistical Microbiome Analysis on metagenomics results from sequencing data samples. In particular, it supports analyses on the PathoScope generated report files. PathoStat provides various functionalities including Relative Abundance charts, Diversity estimates and plots, tests of Differential Abundance, Time Series visualization, and Core OTU analysis.

Getting started

Package details

AuthorSolaiappan Manimaran <[email protected]>, Matthew Bendall <[email protected]>, Sandro Valenzuela Diaz <[email protected]>, Eduardo Castro <[email protected]>, Tyler Faits <[email protected]>, Yue Zhao <[email protected]>, Anthony Nicholas Federico <[email protected]>, W. Evan Johnson <[email protected]>
Bioconductor views GraphAndNetwork Metagenomics Microarray Microbiome PatternLogic PrincipalComponent RNASeq Sequencing Software Visualization
MaintainerSolaiappan Manimaran <[email protected]>, Yue Zhao <[email protected]>
LicenseGPL (>= 2)
Version1.9.2
URL https://github.com/mani2012/PathoStat
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("mani2012/PathoStat")
mani2012/PathoStat documentation built on Nov. 9, 2018, 12:56 a.m.