runPathoStat: Statistical Microbiome Analysis on the pathostat input and...
In mani2012/PathoStat: PathoStat Statistical Microbiome Analysis Package
Description
Usage
Arguments
Value
Examples
Description
Statistical Microbiome Analysis on the pathostat input and generates a
html report and produces interactive shiny app plots
Usage
1
2
runPathoStat(pstat = NULL, report_dir = ".",
report_option_binary = "111111111", interactive = TRUE)
Arguments
pstat
phyloseq extension pathostat object
report_dir
Output report directory path
report_option_binary
9 bits Binary String representing the plots to
display and hide in the report
interactive
when TRUE, opens the interactive shinyApp
Value
outputfile The output file with all the statistical plots
Examples
1
mani2012/PathoStat documentation built on April 3, 2020, 7:41 p.m.
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Description Usage Arguments Value Examples
Description
Statistical Microbiome Analysis on the pathostat input and generates a html report and produces interactive shiny app plots
Usage
1 2 | runPathoStat(pstat = NULL, report_dir = ".",
report_option_binary = "111111111", interactive = TRUE)
|
Arguments
pstat |
phyloseq extension pathostat object |
report_dir |
Output report directory path |
report_option_binary |
9 bits Binary String representing the plots to display and hide in the report |
interactive |
when TRUE, opens the interactive shinyApp |
Value
outputfile The output file with all the statistical plots
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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